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* gnu: r-paws-common: Update to 0.7.0.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-paws-common): Update to 0.7.0. Change-Id: I3eef5a808b6b0918ffa6b15a01f9d1937301b352
* gnu: r-mlr3: Update to 0.17.2.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-mlr3): Update to 0.17.2. Change-Id: I873e6c338e99624750da248083b8c650772dc19d
* gnu: r-stanheaders: Update to 2.32.5.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-stanheaders): Update to 2.32.5. Change-Id: Ie2cccf037fe7c63d8b3574b1504b378f444fb6b3
* gnu: r-patchwork: Update to 1.2.0.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-patchwork): Update to 1.2.0. Change-Id: I10574362f942182b47d29d73747355cec2d7111a
* gnu: r-gbm: Update to 2.1.9.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-gbm): Update to 2.1.9. Change-Id: I2612b6656545b092e8d3ea17c6cf355f5aa0466f
* gnu: r-yulab-utils: Update to 0.1.3.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.3. Change-Id: Icac6a3048d7c1f6b2dc007027a2acfb34e927930
* gnu: r-compositions: Update to 2.0-7.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-compositions): Update to 2.0-7. Change-Id: I79365ad9f61257a1e8feb4697f51db9615845813
* gnu: r-targets: Update to 1.4.1.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-targets): Update to 1.4.1. Change-Id: Ifc7b526b2f0b198875111a17568f40f660a1ac9d
* gnu: r-tarchetypes: Update to 0.7.11.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.11. Change-Id: Ia87abdf6690b3db8e43be009e8948777293f0ead
* gnu: r-writexls: Update to 6.5.0.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-writexls): Update to 6.5.0. Change-Id: I148760efa41cc8b4c6762638629f79296e61ca7a
* gnu: r-ggrepel: Update to 0.9.5.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-ggrepel): Update to 0.9.5. Change-Id: Ib87cbfacc9f3fce1d1e4bc0d9cbb0fb467522bfb
* gnu: r-rcpp: Update to 1.0.12.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-rcpp): Update to 1.0.12. Change-Id: Ia0e182858d8693d00d646bf4f4f38e064674f5bc
* gnu: r-glue: Update to 1.7.0.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-glue): Update to 1.7.0. Change-Id: Ic843c657fe483c677af10b7a98bdb654d0441561
* gnu: r-reprex: Update to 2.1.0.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-reprex): Update to 2.1.0. Change-Id: I3c5e7f79cd7b6171ae9ec4562ce8866455f05ae6
* gnu: r-astsa: Update to 2.1.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-astsa): Update to 2.1. Change-Id: Ia3ceb05742c9acdd8fbb117f342d526bf7ee1bc1
* gnu: r-ggpp: Update to 0.5.6.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-ggpp): Update to 0.5.6. Change-Id: Ib9a5bb2ff59381f301f481e189a196706cdbb928
* gnu: r-zcompositions: Update to 1.5.0-1.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-1. Change-Id: I472ebcf9f2d3f1d401f19b4a67b27bb892249cac
* gnu: r-castor: Update to 1.8.0.Ricardo Wurmus2024-01-11
| | | | | | | * gnu/packages/cran.scm (r-castor): Update to 1.8.0. [propagated-inputs]: Add r-jsonlite. Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670
* gnu: r-rcurl: Update to 1.98-1.14.Ricardo Wurmus2024-01-11
| | | | | | | | * gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14. [native-inputs]: Move libxml2 from here... [inputs]: ...to here. Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140
* gnu: r-rstan: Update to 2.32.5.Ricardo Wurmus2024-01-11
| | | | | | | * gnu/packages/cran.scm (r-rstan): Update to 2.32.5. [properties]: Tell updater to leave tzdata-for-tests. Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7
* gnu: r-topicmodels: Update to 0.2-16.Ricardo Wurmus2024-01-11
| | | | | | | * gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16. [properties]: Tell updater not to remove GSL from inputs. Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f
* gnu: r-rpostgresql: Update to 0.7-6.Ricardo Wurmus2024-01-11
| | | | | | | * gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-6. [properties]: Tell updater not to remove postgresql input. Change-Id: Id88180f2781022b1554286f4beee85183ff474ac
* gnu: r-readr: Update to 2.1.5.Ricardo Wurmus2024-01-11
| | | | | | * gnu/packages/statistics.scm (r-readr): Update to 2.1.5. Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c
* gnu: python-afdko: Disable failing test.Ricardo Wurmus2024-01-11
| | | | | | | * gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable test_alt_missing_glyph. Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0
* gnu: openjdk11: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus2024-01-10
| | | | | | | | | Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk11)[source]: Add patch. Change-Id: I5ff53b8dd90598721a6c3814980c6553013b347c
* gnu: openjdk10: Simplify.Ricardo Wurmus2024-01-10
| | | | | | | * gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build phase. Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7
* gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus2024-01-10
| | | | | | | | | | | Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk10)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b
* gnu: Fix patch location.Ricardo Wurmus2024-01-10
| | | | | | | | This is a follow-up to commit db7488a7fbd829d25b0b5c5e53b1c680b67832b1. * gnu/local.mk (dist_patch_DATA): Restore "packages/" prefix. Change-Id: I1f8e420e75c3f4e1927dac935c2de337fd1306eb
* gnu: openjdk9: Simplify.Ricardo Wurmus2024-01-10
| | | | | | | * gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN. [arguments]: Delete trailing #T from build phases. Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
* gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus2024-01-10
| | | | | | | | | | | Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk9)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
* gnu: python-distributed: Disable breaking test.Ricardo Wurmus2024-01-10
| | | | | | | | | This test times out since the merge of the mesa-updates branch. * gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_tell_workers_when_peers_have_left. Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
* gnu: Add r-jaspar2020.nafkhamdc2024-01-10
| | | | | | * gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
* gnu: Add r-dsb.nafkhamdc2024-01-10
| | | | | | * gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
* gnu: r-signac: Update to 1.12.0-1.8ecdde2.nafkhamdc2024-01-10
| | | | | | * gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2. Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
* gnu: Add r-escape.nafkhamdc2024-01-10
| | | | | | * gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
* gnu: Add python-telomerecat.Ricardo Wurmus2024-01-10
| | | | | | * gnu/packages/bioinformatics.scm (python-telomerecat): New variable. Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
* gnu: Add python-parabam.Ricardo Wurmus2024-01-10
| | | | | | * gnu/packages/bioinformatics.scm (python-parabam): New variable. Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
* gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’.Ludovic Courtès2024-01-10
| | | | | | | | | | | | | | Fixes <https://issues.guix.gnu.org/68333>. * gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’ parameter and honor it. [native-inputs]: Add patch for “jdk-drop”. (icedtea-8): Likewise. * gnu/packages/patches/jdk-currency-time-bomb.patch, gnu/packages/patches/jdk-currency-time-bomb2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
* gnu: mesa: Fix cross-compilation.Zheng Junjie2024-01-10
| | | | | | | | * gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force the use of the cmake method to find llvm. Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
* gnu: yaml-cpp: Update to 0.8.0.Zheng Junjie2024-01-10
| | | | | | | * gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0. Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
* gnu: Add cl-stripe.Andre A. Gomes2024-01-10
| | | | | | | * gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7
* gnu: nyxt: Update to 3.11.0.Andre A. Gomes2024-01-10
| | | | | | * gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: cl-prompter: Update to 0.1.1-0.7890ed5.Andre A. Gomes2024-01-10
| | | | | | | * gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8
* Authorize Oleg (Sharlatan)'s key.Maxim Cournoyer2024-01-09
| | | | | | * .guix-authorizations (sharlatan): Register PGP key fingerprint. Change-Id: I0d20e50a37971237721964852a404c5cf136f0be
* tests: telephony: Fix typo.Maxim Cournoyer2024-01-09
| | | | | | | | | | * gnu/tests/telephony.scm: Fix typo. Series-to: 65371@debbugs.gnu.org Series-postfix: telephony-team Series-version: 2 Change-Id: I3eb048b8cdd1335c45ffb61b08425a18a2e7a4b2
* tests: telephony: Fix VPATH builds.Wojtek Kosior2024-01-09
| | | | | | | | | | * gnu/tests/telephony.scm (%jami-account-content-sexp): New variable. Compute its value with `read` instead of using `include`. * gnu/tests/data/jami-dummy-account.dat (%jami-account-content-sexp): Remove variable. Make the file contain just the S-expression. Change-Id: I8d37aaf7b739f5f39715bfb8a9b8c9536385fd09 Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
* gnu: jami-docs: Update to 0.0.0-2.a48997d.Maxim Cournoyer2024-01-09
| | | | | | * gnu/packages/jami.scm (jami-docs): Update to 0.0.0-2.a48997d. Change-Id: I0c6ee456dec6251a66d1566c855069f3ecf2e44e
* gnu: jami: Update to 20231222.2.Maxim Cournoyer2024-01-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/jami.scm (%jami-version): Rename to... (%jami-nightly-version): ... this. Update to 20231222.2. (%jami-daemon-commit): New variable. (%jami-sources): Delete variable. (libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit. [source]: Fetch from git. Apply libjami-ac-config-files.patch. [arguments] <make-flags>: Skip ut_media_player test. <phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout phases. [inputs]: Replace dbus-c++ with sdbus-c++. Add dhtnet. Replace libgit2 with libgit2-1.6. (jami): Set version to %jami-nightly-version. [source]: Fetch from git. Apply new jami-qml-tests-discovery.patch, jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch patches. [arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF. <phases>: Delete change-directory/maybe. Adjust check phase. Add fake-x11-environment, copy-3rdparty-source-dependencies and disable-problematic-tests phases. [inputs]: Add md4c and tidy-html. * gnu/packages/patches/jami-qml-tests-discovery.patch: New file. * gnu/packages/patches/libjami-ac-config-files.patch: Likewise. * gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise. * gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise. * gnu/packages/patches/jami-libjami-headers-search.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch. Series-changes: 2 - Update Jami to latest nightly version (20231222.2) Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae
* gnu: Add sortfilterproxymodel.Maxim Cournoyer2024-01-09
| | | | | | * gnu/packages/jami.scm (sortfilterproxymodel): New variable. Change-Id: I7c46fce26d5fcdc98e8646e65dd119155a8b9287
* gnu: ffmpeg-jami: Relocate to (gnu packages video).Maxim Cournoyer2024-01-09
| | | | | | | | | | | | | | | | | | | | | | | | To avoid Guile module dependency cycles, inherited packages must be defined in the same module. Use this opportunity to simplify the patches applying mechanism, versioning custom patches the same as for other packages. * gnu/packages/patches/ffmpeg-jami-change-RTCP-ratio.patch: New file. * gnu/packages/patches/ffmpeg-jami-rtp_ext_abs_send_time.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusdec-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-reload-packet-loss-at-encode.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-remove-mjpeg-log.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-screen-sharing-x11-fix.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/jami.scm (jami-apply-custom-patches): Delete procedure. (%ffmpeg-default-configure-flags): Delete variable. (ffmpeg-compose-configure-flags): Delete procedure. (ffmpeg-jami): Move to... * gnu/packages/video.scm (ffmpeg-jami): ... here. Apply patches to origin and repatriate configure flags. Change-Id: Id374fae18240cd76b224915d80b61422635ccb77
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