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* gnu: ceph: Update to 17.2.5.Ricardo Wurmus2022-12-23
| | | | | | | | | | | * gnu/packages/storage.scm (ceph): Update to 17.2.5. [source]: Remove obsolete patches; remove bundled sources for arrow. [arguments]: Disable parallel build; use system arrow. [inputs]: Drop input labels; add apache-thrift, apache-arrow-for-ceph, and utf8proc. * gnu/packages/patches/ceph-boost-compat.patch: Delete file. * gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: Add apache-arrow-for-ceph.Ricardo Wurmus2022-12-23
| | | | * gnu/packages/databases.scm (apache-arrow-for-ceph): New variable.
* doc: Wrap $localstatedir in Texinfo syntax.Ricardo Wurmus2022-12-23
| | | | * doc/guix.texi (Limitations): Use @file syntax.
* doc: Suggest remounting store before relabeling the file system.Ricardo Wurmus2022-12-23
| | | | | * doc/guix.texi (Installing the SELinux policy): Mention that the store may need to be remounted before writing to it.
* etc: SELinux: Allow init process to setattr on profile directories.Ricardo Wurmus2022-12-23
| | | | * etc/guix-daemon.cil.in: Add rule.
* etc: SELinux: Allow daemon to search run state directories.Ricardo Wurmus2022-12-23
| | | | | * etc/guix-daemon.cil.in: Import types init_var_run_t and system_dbusd_var_run_t; add rules.
* etc: SELinux: Label guix-daemon executable in profile.Ricardo Wurmus2022-12-23
| | | | | * etc/guix-daemon.cil.in: Add file rule for "guix-daemon" in current-guix profile.
* gnu: naev: Update to 0.10.0.Nicolas Goaziou2022-12-23
| | | | | * gnu/packages/games.scm (naev): Update to 0.10.0. [inputs]: Add ENET, PCRE2.
* gnu: fet: Update to 6.7.7.Nicolas Goaziou2022-12-23
| | | | * gnu/packages/education.scm (fet): Update to 6.7.7.
* gnu: sdrangel: Update to 7.8.5.Guillaume Le Vaillant2022-12-23
| | | | | * gnu/packages/radio.scm (sdrangel): Update to 7.8.5. [arguments]: Remove 'fix-boost-compatibility' phase.
* gnu: aptdec: Update to 1.7-3.4d4a0c9.Guillaume Le Vaillant2022-12-23
| | | | * gnu/packages/radio.scm (aptdec): Update to 1.7-3.4d4a0c9.
* gnu: emacs-cider: Update to 1.6.0.Nicolas Goaziou2022-12-23
| | | | * gnu/packages/emacs-xyz.scm (emacs-cider): Update to 1.6.0.
* gnu: emacs-vertico: Update to 1.0.Nicolas Goaziou2022-12-23
| | | | * gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 1.0.
* gnu: emacs-subed: Update to 1.0.28.Nicolas Goaziou2022-12-23
| | | | * gnu/packages/emacs-xyz.scm (emacs-subed): Update to 1.0.28.
* gnu: sgabios: Fix build on cross-build architectures.Efraim Flashner2022-12-23
| | | | | * gnu/packages/firmware.scm (sgabios)[arguments]: When cross-building add a make-flag to use the correct objcopy.
* gnu: netcdf: Update to 4.9.0.Roman Scherer2022-12-23
| | | | | | | | | * gnu/packages/maths.scm (netcdf): Update to 4.9.0. [source]: Use new URI. [inputs]: Add libxml2 and unzip. [arguments]: Update 'configure-flags'. Add 'fix-test-rcmerge' phase. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* home: xdg: Add with-imported-modules to xdg activation script.Andrew Tropin2022-12-23
| | | | | | | Without it activation doesn't work when called in clean environment. * gnu/home/services/xdg.scm (ensure-xdg-base-dirs-on-activation): Add with-imported-modules to xdg activation script.
* gnu: emacs-mood-line: Update to 2.0.0.Nicolas Goaziou2022-12-22
| | | | * gnu/packages/emacs-xyz.scm (emacs-mood-line): Update to 2.0.0.
* gnu: emacs-marginalia: Update to 1.0.Nicolas Goaziou2022-12-22
| | | | * gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 1.0.
* gnu: emacs-org-msg: Update to 4.0.Morgan Willcock2022-12-22
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-org-msg): Update to 4.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: emacs-god-mode: Run tests.Nicolas Goaziou2022-12-22
| | | | | * gnu/packages/emacs-xyz.scm (emacs-god-mode)[arguments]: Run tests. [native-inputs]: Add EMACS-ECUKES.
* gnu: emacs-god-mode: Update to 2.18.0.Hilton Chain2022-12-22
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-god-mode): Update to 2.18.0. [source,home-page]: Changed URL. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: emacs-dashboard: Improve package style.Nicolas Goaziou2022-12-22
| | | | | | | * gnu/packages/emacs-xyz.scm (emacs-dashboard)[arguments]: Use G-expressions. <#:include>: Use %default-include. <#:phases>: Remove trailing #T, and unnecessary call to CHMOD. [description]: Properly capitalize it.
* gnu: emacs-dashboard: Update to 1.7.0-0.a69cc10.florhizome2022-12-22
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-dashboard): Update to 1.7.0-0.a69cc10. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
* gnu: ipxe-qemu: Fix building on 32-bit systems.Efraim Flashner2022-12-22
| | | | | | * gnu/packages/bootloaders.scm (ipxe-qemu)[native-inputs]: When building from a 32-bit system add a binutils variant capable of assembling 64-bit instructions and an ld-wrapper using it.
* gnu: linux-libre 5.10: Update to 5.10.161.Leo Famulari2022-12-22
| | | | | * gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.161. (linux-libre-5.10-pristine-source): Update hash.
* gnu: linux-libre 5.15: Update to 5.15.85.Leo Famulari2022-12-22
| | | | | * gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.85. (linux-libre-5.15-pristine-source): Update hash.
* gnu: linux-libre: Update to 6.0.15.Leo Famulari2022-12-22
| | | | | * gnu/packages/linux.scm (linux-libre-6.0-version): Update to 6.0.15. (linux-libre-6.0-pristine-source): Update hash.
* gnu: stockfish: Update to 15.1.Michael Rohleder2022-12-22
| | | | | | | | * gnu/packages/games.scm (stockfish): Update to 15.1. [arguments]: Renamed phase remove-m-flag to remove-m-flag-and-net-target. Add removing of the net target in the Makefile, because it wants networking. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: Add dsd.Guillaume Le Vaillant2022-12-22
| | | | * gnu/packages/radio.scm (dsd): New variable.
* gnu: QEMU: Unbundle SGABIOS.Marius Bakke2022-12-22
| | | | | | * gnu/packages/virtualization.scm (qemu)[source]: Purge sgabios. [arguments]: Replace bundled variant with the one from INPUTS. [inputs]: Add SGABIOS.
* gnu: Add sgabios.Marius Bakke2022-12-22
| | | | * gnu/packages/firmware.scm (sgabios): New variable.
* gnu: iPXE: Embed the actual package version.Marius Bakke2022-12-22
| | | | | * gnu/packages/bootloaders.scm (ipxe)[arguments]: Add phase to set the proper version.
* gnu: Install QEMU firmare files to 'share/qemu'.Marius Bakke2022-12-22
| | | | | | | | | This paves the way for using a native search path in the future. * gnu/packages/bootloaders.scm (ipxe-qemu)[arguments]: Install firmware files to 'share/qemu' instead of 'share/firmware'. * gnu/packages/firmware.scm (seabios-qemu)[arguments]: Likewise. * gnu/packages/virtualization.scm (qemu)[arguments]: Adjust accordingly.
* gnu: QEMU: Unbundle iPXE.Marius Bakke2022-12-22
| | | | | | * gnu/packages/virtualization.scm (qemu)[source](snippet): Purge iPXE. [arguments]: Re-add firmware files from IPXE-QEMU. [inputs]: Add IPXE-QEMU.
* gnu: ipxe-qemu: Cross-compile on non x86_64.Marius Bakke2022-12-22
| | | | | | * gnu/packages/bootloaders.scm (ipxe-qemu)[native-inputs]: When not targeting x86_64, add CROSS-GCC and CROSS-BINUTILS. [arguments]: Set CROSS_COMPILE in that case.
* gnu: SeaBIOS: Split QEMU variants out to separate package.Marius Bakke2022-12-22
| | | | | | | | * gnu/packages/firmware.scm (seabios)[arguments]: Move custom build and install phases out to ... (seabios-qemu): ... this new variable. * gnu/packages/virtualization.scm (qemu)[inputs]: Change from SEABIOS to SEABIOS-QEMU.
* gnu: QEMU: Don't provide --firmwarepath for user-mode binaries.Marius Bakke2022-12-22
| | | | | * gnu/packages/virtualization.scm (qemu)[arguments]: Remove --firmwarepath from the user-mode emulation configure invocation.
* gnu: openvpn: Update to 2.5.8.Efraim Flashner2022-12-22
| | | | * gnu/packages/vpn.scm (openvpn): Update to 2.5.8.
* gnu: Add r-bedtorch.Ricardo Wurmus2022-12-22
| | | | * gnu/packages/bioinformatics.scm (r-bedtorch): New variable.
* gnu: Add r-rhtslib12.Ricardo Wurmus2022-12-22
| | | | * gnu/packages/bioinformatics.scm (r-rhtslib12): New variable.
* gnu: Add wiggletools.Ricardo Wurmus2022-12-22
| | | | * gnu/packages/bioinformatics.scm (wiggletools): New variable.
* gnu: xterm: Update to 377.Efraim Flashner2022-12-22
| | | | * gnu/packages/xorg.scm (xterm): Update to 377.
* gnu: guile-ssh: Update to 0.16.0.Vagrant Cascadian2022-12-21
| | | | * gnu/packages/ssh.scm (guile-ssh): Update to 0.16.0.
* gnu: fheroes2: Update to 1.0.0.Andrew Tropin2022-12-22
| | | | * gnu/packages/games.scm (fheroes2): Update to 1.0.0.
* gnu: Add python-episcanpy.Navid Afkhami2022-12-22
| | | | | | * gnu/packages/bioinformatics.scm (python-episcanpy): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-bamnostic.Navid Afkhami2022-12-22
| | | | | | * gnu/packages/bioinformatics.scm (python-bamnostic): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add vembrane.Ricardo Wurmus2022-12-21
| | | | * gnu/packages/bioinformatics.scm (vembrane): New variable.
* gnu: python-plastid: Update to 0.6.0.Ricardo Wurmus2022-12-21
| | | | | | | | | | * gnu/packages/bioinformatics.scm (python-plastid): Update to 0.6.0. [source]: Fetch from git repository. [build-system]: Use pyproject-build-system. [arguments]: Enable tests; add build phases 'unpack-test-data and 'build-extensions. [inputs]: Add openssl. [native-inputs]: Add test data.
* gnu: python-pysam: Update to 0.20.0.Ricardo Wurmus2022-12-21
| | | | | * gnu/packages/bioinformatics.scm (python-pysam): Update to 0.20.0. [build-system]: Use pyproject-build-system.
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