| Commit message (Collapse) | Author | Age |
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* gnu/packages/python-web.scm (python-tinycss2)[source]: Fetch from git
repository to include tests.
[arguments]: Build from source with flit.
[native-inputs]: Add python-flit, python-pytest, python-pytest-cov,
python-pytest-flake8, and python-pytest-isort.
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* gnu/packages/python-xyz.scm (python-ipywidgets): Update to 7.6.3.
[propagated-inputs]: Add python-ipython, python-jupyterlab-widgets, and
python-nbformat.
[native-inputs]: Remove python-nose; add python-mock and ptyhon-pytest-cov.
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* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Remove python-argon2-cffi, python-ipykernel, and python-terminado.
[native-inputs]: Remove python-certifi and python-nose.
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* gnu/packages/jupyter.scm (python-jupyterlab-widgets): New variable.
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* gnu/packages/jupyter.scm (python-jupyter-packaging): New variable.
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* gnu/packages/python-xyz.scm (python-deprecation): New variable.
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* gnu/packages/check.scm (python-testpath): Update to 0.4.4.
[arguments]: Build the package as intended with flit.
[native-inputs]: Add python-flit.
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* gnu/packages/python-xyz.scm (python-flit): Update to 3.2.0.
[source]: Fetch from git repository to include flit_core.
[arguments]: Add phases to bootstrap the build.
[propagated-inputs]: Add python-pytoml and python-toml.
[native-inputs]: Add python-docutils, python-responses,
python-pygments-github-lexers, python-pytest, python-pytest-cov,
python-sphinx, python-sphinxcontrib-github-alt, and python-testpath.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-github-alt): New variable.
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* gnu/packages/python-web.scm (python-requests-unixsocket): New variable.
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* gnu/packages/python-xyz.scm (python-pygments-github-lexers): New variable.
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* gnu/packages/python-build.scm (python-pytoml): New variable.
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* gnu/packages/python-xyz.scm (python2-ipykernel): Remove variable.
(python-ipykernel)[properties]: Remove python2-variant.
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* gnu/packages/python-xyz.scm (python2-jupyter-console): Remove variable.
(python-jupyter-console)[properties]: Remove python2-variant.
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* gnu/packages/python-xyz.scm (python2-jupyter-core): Remove variable.
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* gnu/packages/python-xyz.scm (python2-ipyparallel): Remove variable.
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* gnu/packages/python-xyz.scm (python2-matplotlib-documentation): Remove variable.
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* gnu/packages/python-xyz.scm (python-nbformat): Update to 5.1.3.
[arguments]: Remove to enable tests.
[native-inputs]: Add python-pytest.
[properties]: Add python2-variant.
(python2-nbformat): Keep at version 4.4.0; override version and source field.
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* gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.0.7.
[arguments]: Remove configure flags, enable tests, override check phase.
[propagated-inputs]: Add python-defusedxml, python-nbclient,
python-pandocfilters, python-jupyterlab-pygments, and python-testpath.
[properties]: Add python2-variant.
(python2-nbconvert): Override version, source, arguments, and
propagated-inputs.
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* gnu/packages/jupyter.scm (python-nbclient): New variable.
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* gnu/packages/jupyter.scm (python-jupyterlab-pygments): New variable.
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* gnu/packages/python-xyz.scm (python-nest-asyncio): New variable.
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* gnu/packages/python-xyz.scm (python-notebook)[propagated-inputs]: Add
python-argon2-cffi, python-ipykernel, python-ipython-genutils, python-jinja2,
python-jupyter-client, python-pyzmq, python-tornado-6, and python-traitlets.
[native-inputs]: Remove python-nose and python-sphinx; add python-coverage,
python-nbval, python-pytest, python-pytest-cov, and
python-requests-unixsocket.
[arguments]: Use pytest instead of nosetests.
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* gnu/packages/python-xyz.scm (python-notebook): Update to 6.3.0.
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* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Add python-argon2-cffi and python-terminado.
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* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.5.3.
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* gnu/packages/python-xyz.scm (python-jupyter-client): Update to 6.1.12.
[propagated-inputs]: Add python-dateutil and python-tornado-6.
[native-inputs]: Add python-pytest.
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* gnu/packages/python-xyz.scm (python-jupyter-core): Update to 4.7.1.
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* gnu/packages/python-web.scm (python-terminado): Update to 0.9.4.
[propagated-inputs]: Replace python-tornado with python-tornado-6.
[native-inputs]: Replace python-nose with python-pytest.
[home-page]: Follow redirect.
[arguments]: Update check phase.
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* gnu/packages/web.scm (esbuild): Update to 0.11.9.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/visidata.scm (visidata): Update to 2.4.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/gnu-doc.scm (gnu-standards): Update to 2020-11-25.
[source]: Make file-name more descriptive. Use version variable for
revision.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/tex.scm: New variable.
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This fixes: <https://issues.guix.gnu.org/47727>. The OCR prompt detection is
failing, so remove it altogether. It looks like the test doesn't need the
prompt detection delay to work properly.
* gnu/tests/base.scm (run-halt-test): Remove failing OCR detection.
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Fixes <https://bugs.gnu.org/46737>.
PostgreSQL running with a different socket directory to the default one in the
package itself breaks some services, this commit restores the previous
behaviour where PostgreSQL by default will run with a socket directory that
matches the default used by PostgreSQL packaged for Guix.
Switching to a different default value can happen, but only alongside changing
the PostgreSQL package.
* gnu/services/databases.scm (<postgresql-config-file>)[socket-directory]:
Change default to #false.
* doc/guix.texi (Database Services): Update documentation, and specify a
different value for disabling connections via sockets.
* gnu/tests/guix.scm (%guix-data-service-os): Use default PostgreSQL
behaviour.
* gnu/tests/monitoring.scm (%zabbix-os): Likewise.
* gnu/tests/web.scm (patchwork-os): Likewise.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/guile-xyz.scm (guile-picture-language): Update to
0.0.1-5.a1322bf.
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* etc/committer.scm.in (main): Add newline to message.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* etc/committer.scm.in (diff-info): Use "git diff-files" instead of "git diff".
(old-sexp): Use "git cat-file" instead of "git show".
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* doc/guix.texi (Build Systems): Document keyword parameters of
'gnu-build-system'.
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Before this change, the 'gnu-build-system' phases were listed in the
"Build Systems" section, and then summarized in the "Build Phases"
section. This moves everything to "Build Phases".
* doc/guix.texi (Build Systems): Move phase table to...
(Build Phases): ... here. Rearrange surrounding text.
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This should noticeably speed up compilation for channels with many files.
* guix/channels.scm (standard-module-derivation)[build]: Define
'optimizations-for-level' and '-O1'. Pass #:optimization-options to
'compile-files'.
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* gnu/services/networking.scm (ipfs-service-type)[description]: Avoid
abbreviation.
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It is tested whether the IPFS service listens
at the gateway and API ports and whether it
is possible to upload and download a bytevector.
* gnu/tests/networking.scm
(%ipfs-os): New variable.
(run-ipfs-test): New procedure.
(%test-ipfs): New system test.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/tests.scm
(<marionette-configuration>): Add 'extensions' field.
(marionette-shepherd-service): Honour the field.
(with-import-modules-and-extensions): Define a combination
of 'with-import-modules' and 'with-extensions'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This module allows for communicating with the IPFS
gateway over the HTTP interface. The commit has been
cherry-picked from <https://issues.guix.gnu.org/33899>.
The procedures for adding and restoring file trees have
been removed as according to a reply issue 33899, a different
format will be used. The procedure 'add-data' has been
exported as it will be used in the system test for IPFS.
* guix/ipfs.scm: New file.
* Makefile.am (MODULES): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/services/networking.scm (ipfs-service-type)
(%ipfs-home-mapping, %ipfs-environment)
(%ipfs-accounts, %ipfs-home): New variables.
(ipfs-configuration, ipfs-configuration?)
(ipfs-configuration-package, ipfs-configuration-gateway)
(ipfs-configuration-api, ipfs-shepherd-service)
(ipfs-binary, %ipfs-activation): New procedures.
* doc/guix.texi (Networking Services): Document it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Apparently, during grafting, Guix can somehow mangle compiled
Racket CS files (.zo) such that Racket will refuse to load them.
(Maybe it has something to do with compression?)
So, we stop patching Racket sources with absolute paths to store
files (i.e. for foreign libraries to dlopen).
Instead, we put them in a data file that doesn't get compiled or,
in one case, embed it in C.
Fixes https://issues.guix.gnu.org/47064
* gnu/packages/patches/racket-sh-via-rktio.patch: New file.
Adds a special case at the C level, controlled by a preprocessor macro,
to handle attempts to execute "/bin/sh".
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (racket)[source](patches): Apply it.
(racket)[arguments](#:configure-flags): Add the CPP flag to enable it.
(racket)[arguments](#:modules): Use srfi-1.
(racket)[arguments](#:phases): Remove 'patch-/bin/sh and 'pre-configure.
Change 'pre-configure-minimal to just change directory.
Add 'patch-config.rktd-lib-search-dirs after 'build and before 'install
to configure Racket's "lib-search-dirs".
(racket, racket-minimal)[inputs]: Add bash-minimal as an explicit input.
(racket-minimal)[source]: Adjust to inherit patches from racket.
(racket-minimal)[arguments]: Inherit from racket: changes no longer needed.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/bioconductor.scm (r-txdb-dmelanogaster-ucsc-dm6-ensgene):
New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/services.scm (%modify-service): Add clause for DELETE syntax.
(modify-services): Use FILTER-MAP; adjust docstring.
* doc/guix.texi (System Services): Mention alternative syntax.
(X Window): Use MODIFY-SERVICES syntax.
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* gnu/packages/lisp-xyz.scm (sbcl-bodge-queue, cl-bodge-queue,
ecl-bodge-queue): New variables.
Co-authored-by: Guillaume Le Vaillant <glv@posteo.net>
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