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* gnu: pigx-rnaseq: Update to 0.0.5.Ricardo Wurmus2018-12-04
| | | | | * gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5. [inputs]: Replace snakemake-4 with snakemake.
* gnu: pari-gp: Update to 2.11.1.Andreas Enge2018-12-04
| | | | * gnu/packages/algebra.scm (pari-gp): Update to 2.11.1.
* gnu: emacs-irony-mode: Fetch source using git.Tim Gesthuizen2018-12-04
| | | | | | * gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: enlightenment: Use absolute path to 'edje_cc'.Timo Eisenmann2018-12-04
| | | | | | | * gnu/packages/enlightenment.scm (enlightenment)[arguments]: In 'set-system-actions', set absolute file name to 'edje_cc'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: fenics: Skip extra demo in 'check' phase.Paul Garlick2018-12-04
| | | | | | | * gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl' demo to list of demos that require meshes supplied by git-lfs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.Paul Garlick2018-12-04
| | | | | | | * gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi. [arguments]: Add 'with-hypre=1' flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* grafts: Mark as non substitutable.Ludovic Courtès2018-12-04
| | | | | * guix/grafts.scm (graft-derivation/shallow): Pass #:substitutable? to 'build-expression->derivation'.
* refresh: '--list-dependents' ignores deprecated packages.Ludovic Courtès2018-12-04
| | | | * guix/scripts/refresh.scm (all-packages): Filter out deprecated packages.
* build: Default to https://ci.guix.info for substitutes.Ludovic Courtès2018-12-04
| | | | | | | | | * config-daemon.ac (guix_substitute_urls): Always default to "https://ci.guix.info". * doc/guix.texi (SUBSTITUTE-SERVER): Switch to ci.guix.info. * guix/scripts/build.scm (%default-log-urls): Likewise. * guix/scripts/substitute.scm (%default-substitute-urls): Likewise. * guix/store.scm (%default-substitute-urls): Likewise.
* Remove most references to hydra.gnu.org.Ludovic Courtès2018-12-04
| | | | | | | | | | | | | | | * Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org in comment. * build-aux/check-available-binaries.scm: Likewise. * build-aux/check-final-inputs-self-contained.scm: Likewise. * doc/guix.texi (SUBSTITUTE-SERVER): New variable. Use it throughout instead of "mirror.hydra.gnu.org". * doc/contributing.texi (Submitting Patches): Likewise. * gnu/services/base.scm (hydra-key-authorization) (guix-activation): Remove mentions of "hydra.gnu.org" in comments and messages. * gnu/system/install.scm (%installation-services): Likewise. * guix/scripts/size.scm (guix-size): Likewise.
* etc: Add "ci.guix.info.pub" public key file.Ludovic Courtès2018-12-04
| | | | | | | * etc/substitutes/ci.guix.info.pub: New file. * Makefile.am (dist_pkgdata_DATA): Add it. * guix/self.scm (miscellaneous-files): Add "share/guix/ci.guix.info.pub".
* gnu: dolphin-emu: Update to commit 2c57e70.Rutger Helling2018-12-04
| | | | * gnu/packages/emulators.scm (dolphin-emu): Update to commit 2c57e70.
* services: ddclient: Fix unrecognized keywords.Oleg Pykhalov2018-12-04
| | | | | | This patch fixes warnings about unrecognized keywords in logs. * gnu/services/dns.scm (serialize-field): Skip some field names.
* gnu: Beets: Update to 1.4.7.Leo Famulari2018-12-03
| | | | * gnu/packages/music.scm (beets): Update to 1.4.7.
* gnu: python-unidecode: Update to 1.0.23.Leo Famulari2018-12-03
| | | | | * gnu/packages/python.scm (python-unidecode, python2-unidecode): Update to 1.0.23.
* gnu: Beets: Fix compatibility with Python 3.7.Leo Famulari2018-12-03
| | | | | | * gnu/packages/patches/beets-python-3.7-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (beets)[source]: Use it.
* gnu: Add hnsd.Ludovic Courtès2018-12-03
| | | | | | Thank you, Handshake! * gnu/packages/dns.scm (hnsd): New variable.
* nls: Update 'fr' translation.Julien Lepiller2018-12-03
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* gnu: python-cryptography: Update to 2.4.2.Marius Bakke2018-12-03
| | | | | * gnu/packages/python-crypto.scm (python-cryptography-vectors, python-cryptography): Update to 2.4.2.
* gnu: python-statsmodels: Update to 0.9.0.Marius Bakke2018-12-03
| | | | | * gnu/packages/statistics.scm (python-statsmodels): Update to 0.9.0. [arguments]: Remove obsolete workaround.
* gnu: python-scikit-learn: Update source hash.Marius Bakke2018-12-03
| | | | | | | | The upstream git tag moved from 6ccb5e44b188059e9b7459ac02ec97e32a9ab7ba to 55bf5d93e5674f13a1134d93a11fd0cd11aabcd1 two days later... * gnu/packages/machine-learning.scm (python-scikit-learn)[source](sha256): Update for upstream tag change.
* gnu: python-scikit-image: Propagate six and numpy.Marius Bakke2018-12-03
| | | | | | * gnu/packages/python.scm (python-scikit-image)[native-inputs]: Move PYTHON-NUMPY and PYTHON-SIX ... [propagated-inputs]: ... here.
* gnu: python-scikit-image: Update to 0.14.1.Marius Bakke2018-12-03
| | | | | | | | | | | Also add explicit Python2 variants for its dependency closure. * gnu/packages/python.scm (python-scikit-image): Update to 0.14.1. [source](uri): Use PYPI-URI. [propagated-inputs]: Add PYTHON-CLOUDPICKLE, PYTHON-DASK, PYTHON-MATPLOTLIB and PYTHON-PYWAVELETS. (python2-toolz, python2-cloudpickle, python2-locket, python2-blosc, python2-partd, python2-dask): New public variables.
* gnu: python-dask: Update to 1.0.0.Marius Bakke2018-12-03
| | | | | * gnu/packages/python.scm (python-dask): Update to 1.0.0. [arguments]: Disable one test for Python2, and override 'check' phase.
* gnu: python-cloudpickle: Update to 0.6.1.Marius Bakke2018-12-03
| | | | * gnu/packages/python.scm (python-cloudpickle): Update to 0.6.1.
* gnu: Add python-pywavelets.Marius Bakke2018-12-03
| | | | | * gnu/packages/python.scm (python-pywavelets, python2-pywavelets): New public variables.
* gnu: kicad: Fix build with Boost >= 1.68.Marius Bakke2018-12-03
| | | | * gnu/packages/engineering.scm (kicad)[arguments]: Add phase 'adjust-boost-include'.
* gnu: python-greenlet: Update to 0.4.15.Marius Bakke2018-12-03
| | | | * gnu/packages/python.scm (python-greenlet): Update to 0.4.15.
* gnu: python-geventhttpclient: Fix test failure.Marius Bakke2018-12-03
| | | | | * gnu/packages/python-web.scm (python-geventhttpclient)[arguments]: Add "--import-mode=append" to pytest invokation.
* doc: Remove footnotes about guile-json requirements.Eric Bavier2018-12-03
| | | | | | | Follow-up to 6efccabe4e2e3ea1bd14cd0e81bdb83d5f6baaea. * doc/guix.texi (Invoking guix import)[pypi, gem, cpan, json]: Remove footnotes mentioning requirement for Guile-JSON.
* doc: Fix "desktop" OS config example.Laura Lazzati2018-12-03
| | | | | | | * gnu/system/examples/desktop.tmpl (file-systems): Add 'file-system-label' call in 'device' field. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* hg-fetch: Remove .hg directories of sub-repositories.Björn Höfling2018-12-03
| | | | * guix/build/hg.scm (hg-fetch): Remove all .hg directories recursively.
* gnu: emacs-helm-company: Update to 0.2.3.Pierre Neidhardt2018-12-03
| | | | * gnu/packages/emacs.scm (emacs-helm-company): Update to 0.2.3.
* Merge branch 'core-updates'Ludovic Courtès2018-12-03
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| * gnu: rust: Remove flaky test.Danny Milosavljevic2018-12-02
| | | | | | | | | | * gnu/packages/rust.scm (rust-1.22)[arguments]<#:phases>[remove-flaky-test]: New phase.
| * gnu: openfoam: Adjust for glibc 2.28.Ludovic Courtès2018-12-02
| | | | | | | | | | * gnu/packages/simulation.scm (openfoam)[source](modules, snippet): New fields.
| * gnu: blender: Use newer ffmpeg.Efraim Flashner2018-11-30
| | | | | | | | | | | | | | | | * gnu/packages/graphics.scm (blender)[source]: Add patch for newer ffmpeg compatability. [inputs]: Replace ffmpeg-2.8 with ffmpeg. * gnu/packages/patches/blender-newer-ffmpeg.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
| * Merge branch 'master' into core-updatesMarius Bakke2018-11-29
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| * | gnu: kmscon: Don't invoke './configure' during bootstrap.Marius Bakke2018-11-29
| | | | | | | | | | | | | | | * gnu/packages/terminals.scm (kmscon)[arguments]: Change 'autogen.sh' phase to replace 'bootstrap' and set the $NOCONFIGURE environment variable.
| * | gnu: lirc: Build reproducibly.Ludovic Courtès2018-11-29
| | | | | | | | | | | | | | | | | | * gnu/packages/patches/lirc-reproducible-build.patch: New file. * gnu/packages/lirc.scm (lirc)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
| * | gnu: rust: Shorten patch file name.Ludovic Courtès2018-11-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This file name was too long to fit in a tar archive. * gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch: Rename to... * gnu/packages/patches/rust-reproducible-builds.patch: ... this. * gnu/packages/rust.scm (rust-1.27, rust): Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
| * | gnu: libbonobo: Build sequentially.Ludovic Courtès2018-11-29
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | See <https://berlin.guixsd.org/log/5mr1fyac5kyz41zwmnf4b0wm7vl42ryv-libbonobo-2.32.1> for an example of a parallel build failure: CCLD echo-client-2 CCLD bonobo-echo-2 ld: libEcho.a(Bonobo_Sample_Echo-stubs.o): in function `Bonobo_Sample_Echo_echo': /tmp/guix-build-libbonobo-2.32.1.drv-0/libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-stubs.c:12: undefined reference to `Bonobo_Sample_Echo__iinterface' ld: /tmp/guix-build-libbonobo-2.32.1.drv-0/libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-stubs.c:12: undefined reference to `Bonobo_Sample_Echo__classid' ld: /tmp/guix-build-libbonobo-2.32.1.drv-0/libbonobo-2.32.1/samples/echo/Bonobo_Sample_Echo-stubs.c:12: undefined reference to `_ORBIT_skel_small_Bonobo_Sample_Echo_echo' collect2: error: ld returned 1 exit status make[3]: *** [Makefile:488: echo-client-2] Error 1 * gnu/packages/gnome.scm (libbonobo)[arguments]: Add #:parallel-build?.
| * | gnu: orbit2: Specify upstream name.Ludovic Courtès2018-11-27
| | | | | | | | | | | | * gnu/packages/gnome.scm (orbit2)[properties]: New field.
| * | gnu: orbit2: Do not build static libraries.Ludovic Courtès2018-11-27
| | | | | | | | | | | | | | | * gnu/packages/gnome.scm (orbit2)[arguments]: Add "--disable-static" to #:configure-flags.
| * | gnu: mono: Make build reproducible.Danny Milosavljevic2018-11-27
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/mono-mdoc-timestamping.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mono.scm (mono)[source]: Use patch. [arguments]<#:phases>[make-reproducible]: New phase. <#:phases>[set-env]: Set SOURCE_DATE_EPOCH.
| * | gnu: mono: End phase with #t.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | * gnu/packages/mono.scm (mono)[arguments]<#:phases>[set-env]: End with #t.
| * | gnu: adb: Fix build with glibc 2.28.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | | | | | | | * gnu/packages/android.scm (android-platform-version): Use "7.1.2_r36". (android-platform-system-core): Update sha256 hash value (for 7.1.2_r36). (android-platform-bionic): Update sha256 hash value (for 7.1.2_r36).
| * | gnu: python-tblib: Use invoke.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | | | | * gnu/packages/python.scm (python-tblib)[arguments]<#:phases>[check]: Use invoke.
| * | gnu: mono: Fix build with glibc 2.28.Danny Milosavljevic2018-11-26
| | | | | | | | | | | | * gnu/packages/mono.scm (mono)[arguments]<#:phases>[fix-includes]: New phase.
| * | gnu: ams-lv2: Always return #t from phase remove-sse-flags.Björn Höfling2018-11-26
| | | | | | | | | | | | | | | * gnu/packages/music.scm (ams-lv2)[arguments]: Use '(unless' instead of '(when (not'. Return with #t as last value from phase 'remove-sse-flags'.
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