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* gnu: ccache: Update to 3.4.Eric Bavier2018-02-12
| | | | * gnu/packages/ccache.scm (ccache): Update to 3.4.
* gnu: go: Update to 1.9.4 [fixes CVE-2018-6574].Leo Famulari2018-02-12
| | | | * gnu/packages/golang.scm (go-1.9): Update to 1.9.4.
* nls: Update 'zh_CN' translation.Leo Famulari2018-02-12
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* gnu: Add kirigami.Hartmut Goebel2018-02-12
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* gnu: Add r-scran.Ricardo Wurmus2018-02-12
| | | | * gnu/packages/bioinformatics.scm (r-scran): New variable.
* gnu: Add r-scater.Ricardo Wurmus2018-02-12
| | | | | | * gnu/packages/bioinformatics.scm (r-scater): New variable. Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
* gnu: Add r-singlecellexperiment.Ricardo Wurmus2018-02-12
| | | | * gnu/packages/bioinformatics.scm (r-singlecellexperiment): New variable.
* gnu: Add r-beachmat.Ricardo Wurmus2018-02-12
| | | | * gnu/packages/bioinformatics.scm (r-beachmat): New variable.
* gnu: Add r-rhdf5lib.Ricardo Wurmus2018-02-12
| | | | * gnu/packages/bioinformatics.scm (r-rhdf5lib): New variable.
* gnu: Add r-shinydashboard.Ricardo Wurmus2018-02-12
| | | | | | * gnu/packages/web.scm (r-shinydashboard): New variable. Co-authored-by: Raoul Jean Pierre Bonnal <ilpuccio.febo@gmail.com>
* gnu: hdf5: Build with -fPIC.Ricardo Wurmus2018-02-12
| | | | * gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
* gnu: emacs-emms-player-mpv: Update to 0.0.13.Arun Isaac2018-02-12
| | | | * gnu/packages/emacs.scm (emacs-emms-player-mpv): Update to 0.0.13.
* gnu: emacs-ob-ipython: Declare a source file-name.Efraim Flashner2018-02-12
| | | | * gnu/packages/emacs.scm (emacs-ob-ipython)[source]: Add 'file-name field.
* gnu: emacs-d-mode: Declare a source file-name.Efraim Flashner2018-02-12
| | | | * gnu/packages/emacs.scm (emacs-d-mode)[source]: Add 'file-name field.
* gnu: guile-emacs: Declare a source file-name.Efraim Flashner2018-02-12
| | | | * gnu/packages/emacs.scm (guile-emacs)[source]: Add 'file-name field.
* gnu: vifm: Update to 0.9.1.Efraim Flashner2018-02-11
| | | | * gnu/packages/vim.scm (vifm): Update to 0.9.1.
* gnu: libreoffice: Update to 5.4.5.1 [CVE-2018-6871].Marius Bakke2018-02-11
| | | | | | | | | | | | | * gnu/packages/check.scm (cppunit-1.14): New public variable. * gnu/packages/libreoffice.scm (xmlsec-src-libreoffice): Remove variable. (libreoffice): Update to 5.4.5.1. [native-inputs]: Change CPPUNIT to CPPUNIT-1.14. Remove AUTOCONF and AUTOMAKE. [inputs]: Add GPGME, XMLSEC-NSS and LIBLTDL. Remove XMLSEC-SRC-LIBREOFFICE. Replace LIBJPEG with LIBJPEG-TURBO. [arguments]: Remove xmlsec code from PREPARE-SRC-PHASE. Make sure GPGME++ headers are found. Add workaround for <https://bugs.gentoo.org/641812>. Add "--disable-pdfium" to #:configure-flags. * gnu/packages/xml.scm (xmlsec-nss): New public variable.
* gnu: libmd: Update to 1.0.0.Marius Bakke2018-02-11
| | | | | * gnu/packages/crypto.scm (libmd): Update to 1.0.0. [source](uri): Add freedesktop.org mirror.
* gnu: gmtp: Update to 1.3.11.Kei Kebreau2018-02-11
| | | | * gnu/packages/libusb.scm (gmtp): Update to 1.3.11.
* gnu: w3m: Update to 0.5.3+git20180125 [fixes CVE-2018-{6196,6197,6198}].Leo Famulari2018-02-11
| | | | * gnu/packages/w3m.scm (w3m): Update to 0.5.3+git20180125.
* mailmap: Adjust entries for ng0.ng02018-02-11
| | | | Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: python-pycanberra: Use new URLs.ng02018-02-11
| | | | | | | * gnu/packages/libcanberra.scm (python-pycanberra)[source]: Use new URL. [home-page]: Update URL. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: propeller-gcc: Fix build.Ricardo Wurmus2018-02-11
| | | | * gnu/packages/embedded.scm (propeller-gcc)[native-inputs]: Use GCC 4.9.
* gnu: Add r-hdf5array.Ricardo Wurmus2018-02-11
| | | | * gnu/packages/bioinformatics.scm (r-hdf5array): New variable.
* gnu: libtasn1: Fix CVE-2018-6003.Leo Famulari2018-02-10
| | | | | | * gnu/packages/patches/libtasn1-CVE-2018-6003.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
* gnu: libtiff: Fix CVE-2017-{9935,11335,18013}.Leo Famulari2018-02-10
| | | | | | | | | * gnu/packages/patches/libtiff-CVE-2017-9935.patch, gnu/packages/patches/libtiff-CVE-2017-11335.patch, gnu/packages/patches/libtiff-CVE-2017-18013.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (libtiff)[replacement]: New field. (libtiff/fixed): New variable.
* gnu: loksh: Update to 6.2.Tobias Geerinckx-Rice2018-02-11
| | | | * gnu/packages/shells.scm (loksh): Update to 6.2.
* gnu: global: Update to 6.6.2.Tobias Geerinckx-Rice2018-02-11
| | | | * gnu/packages/code.scm (global): Update to 6.6.2.
* gnu: acpica: Update to 20180209.Tobias Geerinckx-Rice2018-02-11
| | | | * gnu/packages/admin.scm (acpica): Update to 20180209.
* gnu: youtube-dl: Update to 2018.02.08.Tobias Geerinckx-Rice2018-02-11
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2018.02.08.
* gnu: perl-net-dns: Update to 1.15.Tobias Geerinckx-Rice2018-02-10
| | | | * gnu/packages/networking.scm (perl-net-dns): Update to 1.15.
* gnu: exfat-utils: Update to 1.2.8.Tobias Geerinckx-Rice2018-02-10
| | | | * gnu/packages/mtools.scm (exfat-utils): Update to 1.2.8.
* gnu: unibilium: Update to 1.2.1.Tobias Geerinckx-Rice2018-02-10
| | | | * gnu/packages/terminals.scm (unibilium): Update to 1.2.1.
* gnu: exim: Update to 4.90.1 [fixes CVE-2018-6789].Leo Famulari2018-02-10
| | | | | * gnu/packages/mail.scm (exim): Update to 4.90.1. [source]: Use HTTPS URLs.
* gnu: Add java-xmlunit-legacy.Julien Lepiller2018-02-10
| | | | * gnu/packages/java.scm (java-xmlunit-legacy): New variable.
* gnu: Add java-xmlunit.Julien Lepiller2018-02-10
| | | | * gnu/packages/java.scm (java-xmlunit): New variable.
* gnu: Add java-jline.Julien Lepiller2018-02-10
| | | | * gnu/packages/java.scm (java-jline): New variable.
* gnu: Add java-xstream.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-xstream): New variable.
* gnu: Add java-jdom2.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-jdom2): New variable.
* gnu: Add java-jettison.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-jettison): New variable.
* gnu: Add java-stax.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-stax): New variable.
* gnu: Add java-kxml2.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-kxml2): New variable.
* gnu: Add java-jaxen.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-jaxen): New variable.
* gnu: Add java-dom4j.Julien Lepiller2018-02-10
| | | | gnu/packages/xml.scm (java-dom4j): New variable.
* gnu: Add java-xmlpull2.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-xmlpull2): New variable.
* gnu: Add java-xpp3.Julien Lepiller2018-02-10
| | | | gnu/packages/xml.scm (java-xpp3): New variable.
* gnu: Add java-xsdlib.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-xsdlib): New variable.
* gnu: Add java-xom.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-xom): New variable.
* gnu: Add java-jaxen-bootstrap.Julien Lepiller2018-02-10
| | | | * gnu/packages/xml.scm (java-jaxen-bootstrap): New variable.
* gnu: Add java-xerces.Julien Lepiller2018-02-10
| | | | | | | | * gnu/packages/java.scm (java-xerces): New variable. * gnu/packages/patches/java-xerces-bootclasspath.patch: New file. * gnu/packages/patches/java-xerces-build_dont_unzip.patch: New file. * gnu/packages/patches/java-xerces-xjavac_taskdef.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them.
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