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* graph: Add '%bag-with-origins-node-type'.Ludovic Courtès2015-11-23
| | | | | | | | | | | * guix/scripts/graph.scm (bag-node-edges): Remove 'filter' call. Add case for 'origin'. (%bag-node-type)[edges]: Add filtering here. (%bag-with-origins-node-type): New variable. (%node-types): Add it. * tests/graph.scm ("bag DAG, including origins"): New test. * tests/guix-graph.sh: Add 'bag-with-origins'. * doc/guix.texi (Invoking guix graph): Document it.
* doc: Mention the 'NIX_REMOTE' variable for 'guix import nix'.Ludovic Courtès2015-11-23
| | | | | | Suggested by rgrau on #guix. * doc/guix.texi (Invoking guix import): Document 'NIX_REMOTE'.
* refresh: Add '--expression'.Ludovic Courtès2015-11-23
| | | | | | * guix/scripts/refresh.scm (%options, show-help): Add --expression. (guix-refresh): Honor it. * doc/guix.texi (Invoking guix refresh): Document it.
* Thank Jan.Ludovic Courtès2015-11-23
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* guix download: Fail when more than one URL is passed.Ludovic Courtès2015-11-23
| | | | | | * guix/scripts/download.scm (guix-download)[parse-option]: Call 'leave' when passed an extra argument. * tests/guix-download.sh: Add test.
* guix download: Gracefully handle missing arguments.Ludovic Courtès2015-11-23
| | | | | | | | Fixes <http://bugs.gnu.org/21991>. Reported by Jan Synáček <jan.synacek@gmail.com>. * guix/scripts/download.scm (guix-download): Call 'leave' when OPTS does not contain an 'argument' key.
* gnu: enca: Add file-name field to source.Taylan Ulrich Bayırlı/Kammer2015-11-23
| | | | * gnu/packages/textutils.scm (enca): Add file-name field to source.
* gnu: recode: Add file-name field to source.Taylan Ulrich Bayırlı/Kammer2015-11-23
| | | | * gnu/packages/textutils.scm (recode): Add file-name field to source.
* gnu: Fix a few 'source-file-name' lint warnings.Ludovic Courtès2015-11-23
| | | | | | | | | | * gnu/packages/firmware.scm (ath9k-htc-firmware)[source](file-name): New field. * gnu/packages/gnunet.scm (guile-gnunet)[source](file-name): New field. * gnu/packages/guile.scm (guile-next)[source](file-name): New field. (guile-minikanren)[source](file-name): New field (guile-gdbm-ffi)[source](file-name): New field. * gnu/packages/ssh.scm (guile-ssh)[source](file-name): New field.
* emacs: Expand 'guix-load-path'.Alex Kost2015-11-23
| | | | | | | | Reported by Mathieu Lirzin <mthl@gnu.org> at <http://lists.gnu.org/archive/html/guix-devel/2015-11/msg00585.html>. * emacs/guix-backend.el (guix-start-repl): Expand 'guix-load-path' to avoid a potentially relative directory name in Guile %load-path.
* ftp-client: Default port for 'ftp-open' is now "ftp".Ludovic Courtès2015-11-22
| | | | | | * guix/ftp-client.scm (ftp-open): Change default #:port to "ftp". * guix/scripts/lint.scm (probe-uri): Remove 'port' parameter to 'ftp-open'.
* ftp-client: Fix off-by-one when trying addresses in 'ftp-open'.Ludovic Courtès2015-11-22
| | | | | | * guix/ftp-client.scm (ftp-open): Change to use 'match' instead of car/cdr, and fix off-by-one (was '(null? addresses)' instead of '(null? (cdr addresses))'.)
* doc: Mention 'guix environment guix'.Ludovic Courtès2015-11-22
| | | | | | * doc/contributing.texi (Building from Git): Mention 'guix environment guix'. Remove outdated description of ./bootstrap. Clarify a few things.
* environment: Correctly handle abnormal exits.Ludovic Courtès2015-11-21
| | | | | | | | Fixes <http://bugs.gnu.org/21958>. * guix/scripts/environment.scm (status->exit-code): New procedure. (exit/status, primitive-exit/status): Use it. * tests/guix-environment-container.sh: Add test.
* tests: Skip 'guix-container-environment.sh' when support is missing.Ludovic Courtès2015-11-21
| | | | | | | | Fixes <http://bugs.gnu.org/21410>. Reported by Alex Vong <alexvong1995@gmail.com>. * tests/guix-environment-container.sh: Exit with 77 when '((@@ (guix scripts environment) assert-container-features))' fails.
* doc: Remove extraneous "See."Ludovic Courtès2015-11-21
| | | | | * doc/contributing.texi (Building from Git): Remove extra "See" and use @xref instead of @pxref.
* gnu: tig: Update to 2.1.1.Efraim Flashner2015-11-21
| | | | * gnu/packages/version-control.scm (tig): Update to 2.1.1.
* gnu: cvs: Use external zlib.Efraim Flashner2015-11-21
| | | | | * gnu/packages/version-control.scm (cvs)[arguments]: add configure flag --with-exernal-zlib.
* gnu: nano: Update to 2.4.3.Efraim Flashner2015-11-21
| | | | * gnu/packages/nano.scm (nano): Update to 2.4.3.
* refresh: Rewrite '--list-dependent' in terms of (guix graph).Ludovic Courtès2015-11-21
| | | | | | * guix/scripts/refresh.scm (all-packages, list-dependents): New procedures. (guix-refresh): Use it.
* graph: Add procedures to query a node's edges.Ludovic Courtès2015-11-21
| | | | | | | * guix/graph.scm (%node-edges, node-edges, node-back-edges) (node-transitive-edges): New procedures. * tests/graph.scm ("node-edges") ("node-transitive-edges + node-back-edges"): New tests.
* Add (guix graph).Ludovic Courtès2015-11-21
| | | | | | | | | * guix/scripts/graph.scm (<node-type>, <graph-backend>, emit-prologue) (emit-epilogue, emit-node, emit-edge, %graphviz-backend, export-graph): Move to... * guix/graph.scm: ... here. New file. * guix/scripts/system.scm, tests/graph.scm: Use it. * Makefile.am (MODULES): Add it.
* gnu: parted: Update to 3.2.Mathieu Lirzin2015-11-21
| | | | | | | | | * gnu/packages/disk.scm (parted): Update to 3.2. [inputs]: Add lvm2 and remove check. Replace readline-6.2 with its latest version. [native-inputs]: Add perl and python for the tests. [arguments]: Use `modify-phases' and adapt to the new tests. [home-page]: Use https.
* gnu: Add qemu-minimal.Ludovic Courtès2015-11-21
| | | | | | | | | | * gnu/packages/qemu.scm (qemu): Exchange with former QEMU-HEADLESS. (qemu-headless): Rename to... (qemu-minimal): ... this. New variable. Pass --target-list. * gnu/packages/debug.scm (qemu-2.3.0): Inherit from QEMU-MINIMAL. * gnu/packages/grub.scm (qemu-for-tests): Likewise. * gnu/system/vm.scm (expression->derivation-in-linux-vm, qemu-image): Update to name change.
* doc: Fix 'geiser-guile-load-path' example.Alex Kost2015-11-21
| | | | | | | Reported by marusich on #guix. * doc/contributing.texi (The Perfect Setup): Wrap modifying 'geiser-guile-load-path' into 'with-eval-after-load'.
* gnu: Add Synfig Studio.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/animation.scm (synfigstudio): New variable.
* gnu: Add Synfig.Ricardo Wurmus2015-11-20
| | | | | | * gnu/packages/animation.scm (synfig): New variable. * gnu/packages/patches/synfig-build-fix.patch: New file. * gnu-system.am (dist_patch_DATA): Add it.
* gnu: Add ETL.Ricardo Wurmus2015-11-20
| | | | | * gnu/packages/animation.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu: Add MLT.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/video.scm (mlt): New variable.
* gnu: Add libxml++.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/gnome.scm (libxml++): New variable.
* gnu: slepc: Update to 3.6.2.Eric Bavier2015-11-20
| | | | | | * gnu/packages/maths.scm (slepc): Update to 3.6.2. [arguments]: Append "/lib" to arpack configure flag. Use 'inputs' rather than '%build-inputs' in 'configure phase.
* gnu: petsc: Update to 3.6.2.Eric Bavier2015-11-20
| | | | * gnu/packages/maths.scm (petsc): Update to 3.6.2.
* gnu: mumps: Update to 5.0.1.Eric Bavier2015-11-20
| | | | * gnu/packages/maths.scm (mumps): Update to 5.0.1.
* gnu: openmpi: Update to 1.10.1.Eric Bavier2015-11-20
| | | | | | | * gnu/packages/mpi.scm (openmpi): Update to 1.10.1. [arguments]: Remove now-unsupported configure flags. Add --enable-builtin-atomics. Remove development-oriented --enable-debug.
* gnu: hwloc: Update to 1.11.1.Eric Bavier2015-11-20
| | | | | | | * gnu/packages/mpi.scm (hwloc): Update to 1.11.1. [source]: Remove patch. * gnu/packages/patches/hwloc-gather-topology-lstopo.patch: Delete it. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: guitarix: Update to 0.34.0.Ricardo Wurmus2015-11-20
| | | | | | | | * gnu/packages/audio.scm (guitarix): Update to 0.34.0. [source]: Remove patch. [inputs]: Add webkitgtk/gtk+-2. * gnu/packages/patches/guitarix-c++11: Remove file. * gnu-system.am (dist_patch_DATA): Remove it.
* gnu: services: Fix typo in gpm-dmd-service.David Thompson2015-11-20
| | | | * gnu/services/base.scm (gpm-dmd-service): s/dmd/gpm/
* gnu: Add emulation-station.David Thompson2015-11-20
| | | | * gnu/packages/games.scm (emulation-station): New variable.
* gnu: preseq: Update to 2.0.Ricardo Wurmus2015-11-20
| | | | | | | | | | | * gnu/packages/bioinformatics.scm (preseq): Update to 2.0. [source]: Add file-name field, remove patches. [arguments]: Remove unused build phases, add make flags. [inputs]: Add smithlab-cpp. * gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file. * gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove them.
* gnu: Add smithlab-cpp.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (smithlab-cpp): New variable.
* gnu: edirect: Update home page.Ricardo Wurmus2015-11-20
| | | | | * gnu/packages/bioinformatics.scm (edirect)[home-page]: Append trailing slash to home page.
* gnu: sra-tools: Update to 2.5.4.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (sra-tools): Update to 2.5.4.
* gnu: ncbi-vdb: Update to 2.5.4.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.5.4.
* gnu: ngs-java: Update to 1.2.2.Ricardo Wurmus2015-11-20
| | | | | * gnu/packages/bioinformatics.scm (ngs-java): Update to 1.2.2. [arguments]: Remove build phase "fix-java-symlink-installation".
* gnu: ngs-sdk: Update to 1.2.2.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.2.
* gnu: Add ruby-net-ssh.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-net-ssh): New variable.
* gnu: Add ruby-mocha.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-mocha): New variable.
* gnu: Add ruby-redcarpet.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-redcarpet): New variable.
* gnu: Add ruby-introspection.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-introspection): New variable.
* gnu: Add ruby-instantiator.Ricardo Wurmus2015-11-20
| | | | * gnu/packages/ruby.scm (ruby-instantiator): New variable.
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