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* gnu: python-attrs: Update to 17.4.0.•••* gnu/packages/python.scm (python-attrs): Update to 17.4.0. Arun Isaac2018-03-31
* gnu: tzdata: Update to 2018d.•••* gnu/packages/base.scm (tzdata): Update to 2018d. Leo Famulari2018-03-29
* ld-wrapper: Allow linking with non-store libraries by default.•••This was suggested on several occasions, notably <https://bugs.gnu.org/24544>. * gnu/packages/ld-wrapper.in (%allow-impurities?): Default to #t and parse the value of 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'. * guix/build/gnu-build-system.scm (set-paths): Set 'GUIX_LD_WRAPPER_ALLOW_IMPURITIES'. Ludovic Courtès2018-03-29
* ld-wrapper: Don't talk about "impure library".•••* gnu/packages/ld-wrapper.in (rpath-arguments): Clarify message instead of saying "impure library". Ludovic Courtès2018-03-29
* ld-wrapper: Make sure debugging output goes through.•••* gnu/packages/ld-wrapper.in (ld-wrapper): Add call to 'force-output'. Ludovic Courtès2018-03-29
* gremlin: Fix typo in export list.•••* guix/build/gremlin.scm: Really export 'elf-dynamic-info-soname'. Ludovic Courtès2018-03-29
* gnu: libarchive: Add '-L' flags in 'libarchive.pc'.•••* gnu/packages/backup.scm (libarchive)[arguments]: Add 'add--L-in-libarchive-pc' phase. Ludovic Courtès2018-03-29
* Merge branch 'master' into core-updatesMarius Bakke2018-03-29
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| * gnu: r-mutationalpatterns: Update to 1.4.3.•••* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.3; [propagated-inputs]: Remove r-gridextra. Roel Janssen2018-03-29
| * gnu: kaiju: Update to 1.6.2.•••* gnu/packages/bioinformatics.scm (kaiju): Update to 1.6.2; [inputs]: Add zlib. Roel Janssen2018-03-29
| * gnu: Add duperemove.•••* gnu/packages/disk.scm (duperemove): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr> Vasile Dumitrascu2018-03-29
| * gnu: Add python-debug.•••Suggested by Pjotr Prins <pjotr.public12@thebird.nl>. * gnu/packages/python.scm (python-debug): New variable. Ludovic Courtès2018-03-29
| * gnu: nano: Update to 2.9.5.•••* gnu/packages/nano.scm (nano): Update to 2.9.5. Efraim Flashner2018-03-29
| * gnu: Add r-idr.•••* gnu/packages/cran.scm (r-idr): New variable. Roel Janssen2018-03-29
| * gnu: Add r-amap.•••* gnu/packages/cran.scm (r-amap): New variable. Roel Janssen2018-03-29
| * gnu: Add r-venndiagram.•••* gnu/packages/cran.scm (r-venndiagram): New variable. Roel Janssen2018-03-29
| * gnu: Add r-pastecs.•••* gnu/packages/cran.scm (r-pastecs): New variable. Roel Janssen2018-03-29
| * gnu: libusb4java: Adjust for building with libusb 1.0.22.•••* gnu/packages/libusb.scm (libusb4java)[arguments]: Add phase to remove "-Werror" flag. Ricardo Wurmus2018-03-29
| * gnu: libusb-for-axoloti: Update patch.•••* gnu/packages/patches/libusb-for-axoloti.patch: Update context for libusb 1.0.22. Ricardo Wurmus2018-03-29
| * gnu: Refactor boot-service-type and activation-service-type.•••* gnu/services.scm (boot-service-type) <compose>: Use the "identity" procedure instead of the "append" procedure because it more accurately reflects the intent, which is to simply return the single list of extensions to which fold-services applies the "compose" procedure. (activation-service-type) <compose>: Likewise. Chris Marusich2018-03-29
| * doc: Improve <service-type> documentation.•••* doc/guix.texi (Service Reference): Correct and clarify some statements regarding the "compose" and "extend" procedures of <service-type>. Chris Marusich2018-03-29
| * guix-install.sh: Explicitly set root's home directory.•••* etc/guix-install.sh (ROOT_HOME): New variable. (sys_create_store, sys_enable_guix_daemon, sys_authorize_build_farms): Use ROOT_HOME instead of ~root or the HOME environment variable. * doc/guix.texi (Binary Installation): Instead of assuming that ~ and $HOME refer to root's directory simply because commands are being run as root, explicilty refer to it via ~root. Fixes: <https://bugs.gnu.org/30728> Chris Marusich2018-03-29
| * gnu: node: Update to 9.10.0.•••* gnu/packages/node.scm (node): Update to 9.10.0. Jelle Licht2018-03-28
| * gnu: http-parser: Update to 2.8.0.•••* gnu/packages/web.scm (http-parser): Update to 2.8.0. Jelle Licht2018-03-28
| * gnu: xf86-video-ati: Update to 18.0.1.•••* gnu/packages/xorg.scm (xf86-video-ati): Update to 18.0.1. Marius Bakke2018-03-28
| * gnu: xf86-input-libinput: Update to 0.27.0.•••* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.27.0. Marius Bakke2018-03-28
| * gnu: ntp: Update to 4.2.8p11 [security-fixes].•••Fixes CVE-2016-1549 and CVE-2018-{7170,7182,7183,7184,7185}. * gnu/packages/ntp.scm (ntp): Update to 4.2.8p11. Leo Famulari2018-03-28
| * gnu: openssl: Replace with OpenSSL 1.0.2o [fixes CVE-2018-0739].•••* gnu/packages/tls.scm (openssl)[replacement]: New field. (openssl-1.0.2o): New variable. Leo Famulari2018-03-28
| * gnu: Add r-parsedate.•••* gnu/packages/cran.scm (r-parsedate): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr> Konrad Hinsen2018-03-28
| * gnu: mu: Fix tests failures triggered by DST.•••* gnu/packages/mail.scm (mu)[phases]: Add 'fix-date-tests. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr> Maxim Cournoyer2018-03-28
| * gnu: Add tcalc.•••* gnu/packages/maths.scm (tcalc): New variables. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr> Nadya Voronova2018-03-28
| * build: Build (guix ci) and (guix scripts weather) when HAVE_GUILE_JSON.•••* Makefile.am (MODULES): Move guix/ci.scm and guix/scripts/weather.scm to the HAVE_GUILE_JSON-guarded block. Ludovic Courtès2018-03-28
| * weather: Report continuous integration stats.•••* guix/scripts/weather.scm (histogram, throughput, queued-subset): New procedures. (report-server-coverage): Report CI information. * doc/guix.texi (Invoking guix weather): Document it. Ludovic Courtès2018-03-28
| * Add (guix ci).•••* guix/ci.scm: New file. * Makefile.am (MODULES): Add it. Ludovic Courtès2018-03-28
| * gnu: culmus: Rename to font-culmus.•••* gnu/packages/fonts.scm (culmus): Rename to... (font-culmus): ...this. Re-indent. Arun Isaac2018-03-28
| * gnu: culmus: Switch to font-build-system.•••* gnu/packages/fonts.scm (culmus): Switch to font-build-system. [arguments]: Replace system* with invoke. Arun Isaac2018-03-28
| * gnu: font-linuxlibertine: Switch to font-build-system.•••* gnu/packages/fonts.scm (font-linuxlibertine): Switch to font-build-system. [arguments]: Replace system* with invoke. Arun Isaac2018-03-28
| * gnu: font-lato: Switch to font-build-system.•••* gnu/packages/fonts.scm (font-lato): Switch to font-build-system. [source]: Use url-fetch/zipbomb. Arun Isaac2018-03-28
| * gnu: icecat: Add fix for CVE-2018-5148.•••* gnu/packages/gnuzilla.scm (icecat)[source]: Add the fix for CVE-2018-5148 from the upstream mozilla-esr52 repository. Mark H Weaver2018-03-27
| * gnu: mupdf: Fix CVE-2018-{6544,1000051}.•••* gnu/packages/patches/mupdf-CVE-2018-1000051.patch, gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/pdf.scm (mupdf)[source]: Use them. Leo Famulari2018-03-27
| * gnu: emacs-org, emacs-org-contrib: Update to 9.1.9.•••* gnu/packages/emacs.scm (emacs-org): (emacs-org-contrib): Update to 20180327, a.k.a. release 9.1.9. Nicolas Goaziou2018-03-27
| * gnu: alpine: Update to 2.21.999.•••* gnu/packages/mail.scm (alpine): Update to 2.21.999. [source]: Change to new upstream location. [home-page]: Use new location. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr> ng02018-03-27
| * guix environment: load manifest files like "guix package" does•••* guix/scripts/environment.scm (options/resolve-packages): When loading manifest files, use the same module environment as in "guix package". Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr> Konrad Hinsen2018-03-27
| * nss: Remove '%compat' from the defaults.•••* gnu/system/nss.scm (%compat): Add comment. (<name-service-switch>)[group, password, shadow]: Remove %COMPAT from the default value. Ludovic Courtès2018-03-27
| * gnu: zstd: Update to 1.3.4.•••* gnu/packages/compression.scm (zstd): Update to 1.3.4. Tobias Geerinckx-Rice2018-03-27
| * gnu: dovecot: Update to 2.3.1.•••* gnu/packages/mail.scm (dovecot): Update to 2.3.1. [arguments]: Rename ‘patch-other-shebangs’ phase to the more accurate ‘patch-other-file-names’... then patch more file names. Tobias Geerinckx-Rice2018-03-27
| * gnu: lyx: Use HTTPS home page.•••* gnu/packages/tex.scm (lyx)[home-page]: Use HTTPS. Tobias Geerinckx-Rice2018-03-27
| * gnu: openssl@1.1.0: Update to 1.1.0h [security fixes].•••Fixes CVE-2017-3738 and CVE-2018-{0733,0739}. * gnu/packages/tls.scm (openssl-next): Update to 1.1.0h. Leo Famulari2018-03-27
| * guix gc: Add '--derivers'.•••* guix/scripts/gc.scm (show-help, %options): Add '--derivers'. (guix-gc): Handle 'list-derivers'. * tests/guix-gc.sh: Add test. * doc/guix.texi (Invoking guix gc): Document it. Ludovic Courtès2018-03-27
| * graph: Add "module" node type.•••* guix/scripts/graph.scm (module-from-package) (source-module-dependencies*): New procedures. (%module-node-type): New variable. (%node-types): Add it. * guix/modules.scm (source-module-dependencies): Export. * tests/graph.scm ("module graph"): New test. * doc/guix.texi (Invoking guix graph): Document it. Ludovic Courtès2018-03-27