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* gnu: pigx-chipseq: Update to 0.0.9.Ricardo Wurmus2018-03-20
| | | | | * gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.9. [inputs]: Add coreutils and grep.
* gnu: Add python-logwrap.Vijayalakshmi2018-03-20
| | | | | | * gnu/packages/python.scm (python-logwrap): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: python-ptyprocess: Update source URL.Oleg Pykhalov2018-03-20
| | | | * gnu/packages/python.scm (python-ptyprocess)[origin](source): Update URL.
* gnu: rofi: Update source hash.Marius Bakke2018-03-20
| | | | | | | | The tarball was updated in-place with a bugfix; see <https://github.com/DaveDavenport/rofi/issues/782>. * gnu/packages/xdisorg.scm (rofi)[source](sha256): Adjust hash. [arguments]: Remove phase 'add-missing-configuration-files'.
* Correct name and Email for ng0.ng02018-03-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * .mailmap: Correct name and Email for ng0. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* gnu: ruby-sanitize: Update to 4.6.3.Kei Kebreau2018-03-20
| | | | | | This fixes CVE-2018-3740. * gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.
* gnu: cdogs-sdl: Update to commit bab20313.宋文武2018-03-20
| | | | | | | | Fixes <https://bugs.gnu.org/30623>. * gnu/packages/games.scm (cdogs-sdl): Update to commit bab2031369b9ea2dbeb7eedbde10a43dd8ca83db. [source]: Use git-fetch.
* gnu: Add r-dyn.Sahithi Yarlagadda2018-03-20
| | | | * gnu/packages/cran.scm (r-dyn): New variable.
* gnu: pigx-bsseq: Update to 0.0.8.Ricardo Wurmus2018-03-20
| | | | * gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
* Merge branch 'staging'Marius Bakke2018-03-20
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| * Revert "Revert "gnu: patchelf: Update argument phase.""Marius Bakke2018-03-20
| | | | | | | | | | | | This change only affects armhf, which doesn't use PatchELF. My bad! This reverts commit b1d096f869ed53b84486855d73c7e9070fdf3ae2.
| * Revert "build-system/meson: Use 'target-arm32?' for armhf-linux case."Marius Bakke2018-03-20
| | | | | | | | | | | | | | This requires adding (guix utils) to the build inputs, and causes too many rebuilds for now. This reverts commit 24a2e9172a2d8970d57865c6130f2184385183a3.
| * Revert "gnu: patchelf: Update argument phase."Marius Bakke2018-03-20
| | | | | | | | | | | | It causes too many rebuilds this late in the 'staging' cycle. This reverts commit c1d1cd817c7ab8d99e962e286c207943765a8e8f.
| * build-system/meson: Use 'target-arm32?' for armhf-linux case.Efraim Flashner2018-03-19
| | | | | | | | | | * guix/build-system/meson.scm (lower, meson-build): Replace armhf-linux detection with 'target-arm32?' macro.
| * patchelf: Use 'https' for source uri.Efraim Flashner2018-03-19
| | | | | | | | * gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
| * gnu: patchelf: Update argument phase.Efraim Flashner2018-03-19
| | | | | | | | | | * gnu/packages/elf.scm (patchelf)[arguments]: Use 'modify-phases' syntax. Replace 'system*' with 'invoke'.
| * gnu: patchelf: Use 'target-arm32?' for armhf-linux case.Efraim Flashner2018-03-19
| | | | | | | | | | | | * gnu/packages/elf.scm (patchelf)[inputs]: Replace armhf-linux detection logic with 'target-arm32?' macro. [arguments]: Same.
| * Merge branch 'master' into stagingMarius Bakke2018-03-19
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| * \ Merge branch 'master' into stagingMarius Bakke2018-03-18
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| * \ \ Merge branch 'staging-next' into stagingMarius Bakke2018-03-12
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| | * | | gnu: giflib: Make "reallocarray" private, solve glibc@2.26 conflict.Hartmut Goebel2018-03-08
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Rename the function and move the declaration from gif_lib.h to gif_lib_private.h to solve conflicts when some .c-file #includes both stdlib.h and gif_lib.h. See also https://sourceforge.net/p/giflib/bugs/110/ * gnu/packages/patches/giflib-make-reallocarray-private.patch: New file * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/image.scm(giflib)[source](patches): New field.
| * | | | gnu: libogg: Update to 1.3.3.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xiph.scm (libogg): Update to 1.3.3.
| * | | | gnu: mesa: Update to 17.3.6.Rutger Helling2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gl.scm (mesa): Update to 17.3.6. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * | | | gnu: libepoxy: Update to 1.5.0.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gl.scm (libepoxy): Update to 1.5.0. [arguments]: Remove obsolete substitution.
| * | | | gnu: libdrm: Update to 2.4.91.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xdisorg.scm (libdrm): Update to 2.4.91.
| * | | | gnu: alsa-plugins: Update to 1.1.5.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/linux.scm (alsa-plugins): Update to 1.1.5.
| * | | | gnu: alsa-utils: Update to 1.1.5.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/linux.scm (alsa-utils): Update to 1.1.5.
| * | | | gnu: alsa-lib: Update to 1.1.5.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/linux.scm (alsa-lib): Update to 1.1.5.
| * | | | gnu: bluez: Update to 5.49.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/linux.scm (bluez): Update to 5.49.
| * | | | gnu: nss, nss-certs: Update to 3.36.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gnuzilla.scm (nss): Update to 3.36. * gnu/packages/certs.scm (nss-certs): Likewise.
| * | | | gnu: nspr: Update to 4.19.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/gnuzilla.scm (nspr): Update to 4.19.
| * | | | gnu: xkbcomp: Update to 1.4.1.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xorg.scm (xkbcomp-intermediate): Update to 1.4.1.
| * | | | gnu: libxshmfence: Update to 1.3.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xorg.scm (libxshmfence): Update to 1.3.
| * | | | gnu: libical: Update to 3.0.3.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/calendar.scm (libical): Update to 3.0.3.
| * | | | gnu: xf86-input-wacom: Update to 0.36.0.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xdisorg.scm (xf86-input-wacom): Update to 0.36.0.
| * | | | gnu: libwacom: Update to 0.29.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/xdisorg.scm (libwacom): Update to 0.29.
| * | | | gnu: libinput: Update to 1.10.2.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/freedesktop.scm (libinput): Update to 1.10.2. [build-system]: Change to MESON-BUILD-SYSTEM. [arguments]: Add #:configure-flags to not build documentation. [native-inputs]: Add CHECK and VALGRIND. Move CAIRO and GTK+ ... [inputs]: ... here. Move LIBEVDEV, LIBWACOM and MTDEV ... [propagated-inputs]: ... here. (libinput-minimal)[native-inputs]: Inherit from LIBINPUT. [inputs]: New field; set to empty list. [arguments]: Inherit from LIBINPUT. Adjust to build system change.
| * | | | build-system/meson: Skip the 'fix-runpath' phase on armhf.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * guix/build-system/meson.scm (lower): Remove DEFAULT-PATCHELF from inputs on armhf. (meson-build): Ignore the 'fix-runpath' phase when building for arm systems.
| * | | | build-system/meson: Add the output directory to RUNPATH.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * guix/build/meson-build-system.scm (configure): Set LDFLAGS before invoking meson.
| * | | | gnu: meson: Update to 0.45.0.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/build-tools.scm (meson): Update to 0.45.0. [arguments]: Explicitly disable tests (they were skipped before).
| * | | | gnu: meson-for-build: Update to 0.44.0.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/build-tools.scm (meson-for-build)[version]: Remove field. [source]: Inherit from MESON.
| * | | | gnu: meson: Don't wrap the meson executable.Marius Bakke2018-03-12
| | | | | | | | | | | | | | | | | | | | * gnu/packages/build-tools.scm (meson)[arguments]: Delete WRAP-PHASE.
| * | | | Merge branch 'master' into stagingMarius Bakke2018-03-08
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| * | | | | gnu: gnome-todo: Fix compatibility with libical >= 3.0.Marius Bakke2018-03-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/gnome-todo-libical-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnome.scm (gnome-todo)[source](patches): Use it.
| * | | | | gnu: gnome-calendar: Update to 3.26.3.Marius Bakke2018-03-07
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gnome.scm (gnome-calendar): Update to 3.26.3.
| * | | | | gnu: evolution-data-server: Update to 3.26.6.Marius Bakke2018-03-07
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/gnome.scm (evolution-data-server): Update to 3.26.6. [arguments]: Set RUNPATH in #:configure-flags to match new libdir structure. Add phase 'dont-override-rpath' to make the build system respect it.
| * | | | | Merge branch 'master' into stagingLeo Famulari2018-03-06
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| * \ \ \ \ \ Merge branch 'master' into stagingMarius Bakke2018-03-01
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| * | | | | | | gnu: ninja: Patch /bin/echo in the correct file.Marius Bakke2018-02-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This is a follow-up to commit d0de4c40e24ee52e4382ee2ac82088932ab49099. * gnu/packages/ninja.scm (ninja)[arguments]: Adjust substitution.
| * | | | | | | gnu: ninja: Patch hard-coded /bin/echo reference.Marius Bakke2018-02-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Solves a test failure on systems where open file limits are high enough for this test to run. See <https://bugs.gnu.org/30601>. * gnu/packages/ninja.scm (ninja)[arguments]: Add substitution.
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