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* services: xorg: Add 'font-misc-misc' to the default font set.Ludovic Courtès2017-12-01
| | | | | | | Fixes <https://bugs.gnu.org/24279>. Reported by John Darrington <john@darrington.wattle.id.au>. * gnu/services/xorg.scm (%default-xorg-fonts): Add FONT-MISC-MISC.
* guix system: 'init' displays a progress bar while copying.Ludovic Courtès2017-12-01
| | | | | | | | | Until now it would print the name of each store item being copied, which was verbose and unhelpful. * guix/scripts/system.scm (copy-closure): Use 'progress-reporter/bar' and 'call-with-progress-reporter'. (guix-system): Parameterize 'current-terminal-columns'.
* guix system: Simplify closure copy.Ludovic Courtès2017-12-01
| | | | | | | | * guix/scripts/system.scm (copy-item): Add 'references' argument and remove 'references*' call. Turn into a non-monadic procedure. (copy-closure): Remove initial call to 'references*'. Only pass ITEM to 'topologically-sorted*' since that's equivalent. Compute the list of references corresponding to TO-COPY and pass it to 'copy-item'.
* weather: Use (guix progress) for progress report.Ludovic Courtès2017-12-01
| | | | | | | | | * guix/progress.scm (start-progress-reporter!, stop-progress-reporter!) (progress-reporter-report!): New procedures. * guix/scripts/weather.scm (call-with-progress-reporter): New procedure. (package-outputs)[update-progress!]: Remove. Use 'call-with-progress-reporter' instead. (guix-weather): Parameterize 'current-terminal-columns'.
* progress: Add 'progress-reporter/bar'.Ludovic Courtès2017-12-01
| | | | * guix/progress.scm (progress-reporter/bar): New procedure.
* progress: 'progress-bar' accounts for brackets.Ludovic Courtès2017-12-01
| | | | | * guix/progress.scm (progress-bar): Subtract 2 to BAR-WIDTH to account for brackets.
* progress: Factorize erase-in-line.Ludovic Courtès2017-12-01
| | | | | * guix/progress.scm (erase-in-line): New procedure. (progress-reporter/file): Use it.
* gnu: ghc-edisoncore: Fix typo in synopsis.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/haskell.scm (ghc-edisoncore)[synopsis]: Fix typo.
* gnu: man-pages: Update to 4.14.Tobias Geerinckx-Rice2017-12-01
| | | | * gnu/packages/man.scm (man-pages): Update to 4.14.
* system: vm: Do not add EFI partition on ARM system.Mathieu Othacehe2017-12-01
| | | | | | | | * gnu/system/vm.scm (qemu-img): Do not add EFI partition if we are targetting ARM. UEFI support on u-boot is still experimental, so do not add EFI partition on ARM for now.
* utils: Add target-arm32? procedure.Mathieu Othacehe2017-12-01
| | | | * guix/utils.scm (target-arm32?): New exported procedure.
* gnu: openfoam: Clean up to reduce closure.Dave Love2017-12-01
| | | | | | | | | This saves ~1GB. * gnu/packages/simulation.scm (openfoam)[outputs]: Add debug. [arguments]: Clean up .o and src after build. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add geomyidae.ng02017-12-01
| | | | | | * gnu/packages/web.scm (geomyidae): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-evil-matchit.Mike Gerwitz2017-12-01
| | | | | | * gnu/packages/emacs.scm (emacs-evil-matchit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: git: Run tests sequentially.Ludovic Courtès2017-12-01
| | | | | | | | Fixes <https://bugs.gnu.org/29512>. Reported by George myglc2 Clemmer <myglc2@gmail.com>. * gnu/packages/version-control.scm (git)[arguments]: Add #:parallel-tests?.
* gnu: elogind: Remove "uaccess" tag usage in "seat-late" rules.Ludovic Courtès2017-12-01
| | | | | * gnu/packages/freedesktop.scm (elogind)[arguments]: Add 'remove-uaccess-tag' phase.
* gnu: linux-libre: Update to 4.14.3.Mark H Weaver2017-12-01
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.3. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.66.Mark H Weaver2017-12-01
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.66.
* gnu: linux-libre@4.4: Update to 4.4.103.Mark H Weaver2017-12-01
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.103.
* doc: Update the example VCS snapshot package definition.Kei Kebreau2017-11-30
| | | | | | | | In commit ee17a9e06e636400e3354796a42ac445dbcc8f96, the helpers git-version and git-file-name removed the need to build version and file name strings manually for packages that use VCS snapshots. doc/guix.texi (Version Numbers): Use git-version and git-file-name.
* gnu: qemu: Enable seccomp support.Rutger Helling2017-11-30
| | | | | | * gnu/packages/virtualization.scm (qemu)[inputs]: Add libseccomp. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: fish-guix: Update to 0.1.2.1.ng02017-11-30
| | | | | | | * gnu/packages/shells.scm (fish-guix): Update to 0.1.2.1. (license): Switch to bsd-3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* vm: Filter out file systems that refer to UUIDs or labels.Ludovic Courtès2017-11-30
| | | | | * gnu/system/vm.scm (virtualized-operating-system)[user-file-systems]: Filter out things that refer to file system UUIDs or labels.
* gnu: monero-core: Fix missing dependency.Vasile Dumitrascu2017-11-30
| | | | | | * gnu/packages/finance.scm (monero-core)[inputs]: Add readline. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add xautolock.Mike Gerwitz2017-11-30
| | | | | | * gnu/packages/xdisorg.scm (xautolock): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* ui: Present 'use-modules' hints with a question mark.Ludovic Courtès2017-11-30
| | | | | | | Suggested by myglc2 <myglc2@gmail.com>. * guix/ui.scm (report-load-error): Write "Did you forget" rather than "Try adding."
* gnu: jellyfish: Update to 2.2.7.Ricardo Wurmus2017-11-30
| | | | | | * gnu/packages/bioinformatics.scm (jellyfish): Update to 2.2.7. [native-inputs]: Add pkg-config. [inputs]: Add htslib.
* gnu: r-bigmemory: Update to 4.5.31.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-bigmemory): Update to 4.5.31. [propagated-inputs]: Remove r-r-utils.
* gnu: r-cowplot: Update to 0.9.1.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-cowplot): Update to 0.9.1. [propagated-inputs]: Add r-scales.
* gnu: r-rcppprogress: Update to 0.4.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rcppprogress): Update to 0.4. [propagated-inputs]: Add r-devtools.
* gnu: r-rmarkdown: Update to 1.8.Ricardo Wurmus2017-11-30
| | | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 1.8. [propagated-inputs]: Remove r-catools; add r-mime and r-stringr.
* gnu: r-batchjobs: Update to 1.7.Ricardo Wurmus2017-11-30
| | | | | | * gnu/packages/statistics.scm (r-batchjobs): Update to 1.7. [propagated-inputs]: Add r-backports, r-data-table, and r-stringi; remove r-fail and r-stringr.
* gnu: r-pracma: Update to 2.1.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/maths.scm (r-pracma): Update to 2.1.1.
* gnu: r-annotationhub: Update to 2.10.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.1.
* gnu: r-msnid: Update to 1.12.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-msnid): Update to 1.12.1.
* gnu: r-maldiquant: Update to 1.17.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.17.
* gnu: r-genomicalignments: Update to 1.14.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.14.1.
* gnu: r-limma: Update to 3.34.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.2.
* gnu: r-variantannotation: Update to 1.24.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.2.
* gnu: r-getopt: Update to 1.20.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-getopt): Update to 1.20.1.
* gnu: r-gseabase: Update to 1.40.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.40.1.
* gnu: r-dexseq: Update to 1.24.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.1.
* gnu: r-deseq2: Update to 1.18.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.18.1.
* gnu: r-annotate: Update to 1.56.1.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/bioinformatics.scm (r-annotate): Update to 1.56.1.
* gnu: r-circlize: Update to 0.4.2.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-circlize): Update to 0.4.2.
* gnu: r-rcpp: Update to 0.12.14.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-rcpp): Update to 0.12.14.
* gnu: r-timedate: Update to 3042.101.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/cran.scm (r-timedate): Update to 3042.101.
* gnu: r-stringi: Update to 1.1.6.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-stringi): Update to 1.1.6.
* gnu: r-devtools: Update to 1.13.4.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-devtools): Update to 1.13.4.
* gnu: r-mclust: Update to 5.4.Ricardo Wurmus2017-11-30
| | | | * gnu/packages/statistics.scm (r-mclust): Update to 5.4.
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