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* gnu: Adapt Lisp packages to changes in asdf-build-system.•••* gnu/packages/patches/sbcl-graph-asdf-definitions.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/lisp-xyz.scm (sbcl-cl-ppcre)[arguments]: Add 'disable-ppcre-unicode' phase. (sbcl-cl-unicode-base): Remove variable and merge its content in ... (sbcl-cl-unicode): ... here. (sbcl-cl-ppcre-unicode)[arguments]: Add 'disable-ppcre' phase. (sbcl-cl-aa, sbcl-cl-paths, sbcl-cl-paths-ttf): Remove variables and merge their contents in ... (sbcl-cl-vectors): ... here. (sbcl-spatial-trees)[arguments]: Remove 'asd-file' keyword. (sbcl-clx-truetype)[inputs]: Remove 'cl-paths-ttf'. (sbcl-slynk-boot0, sbcl-slynk-arglists, sbcl-slynk-util, sbcl-slynk-fancy-inspector, sbcl-slynk-package-fu, sbcl-slynk-mrepl, sbcl-slynk-trace-dialog, sbcl-slynk-profiler, sbcl-slynk-stickers, sbcl-slynk-indentation, sbcl-slynk-retro, slynk-systems): Remove variables and merge their contents in ... (sbcl-slynk): ... here. (uglify-js)[arguments]: Fix ASDF initialization in Lisp script. (sbcl-cl-yacc)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-3bmd-ext-code-blocks): Remove variable and merge its content in ... (sbcl-3bmd): ... here. (sbcl-slime-swank, ecl-slime-swank): New variables. (sbcl-mgl-pax)[propagated-inputs]: Remove and move the content in ... [inputs]: ... here. Remove '3bmd-ext-code-blocks'. (sbcl-prove-asdf): Remove variable and merge its content in ... (sbcl-prove): ... here. (sbcl-proc-parse)[native-inputs]: Remove 'prove-asdf'. (sbcl-ascii-strings, sbcl-simple-scanf): Remove variables and merge their contents in ... (sbcl-cl-string-match): ... here. (sbcl-queues.simple-queue, sbcl-queues.simple-cqueue, sbcl-queues.priority-queue, sbcl-queues.priority-cqueue): Remove variables and merge their contents in ... (sbcl-queues): ... here. (sbcl-cffi-bootstrap, sbcl-cffi-toolchain, sbcl-cffi-libffi, sbcl-cffi-grovel, sbcl-cffi-uffi-compat): Remove variables and merge their contents in ... (sbcl-cffi): ... here. (ecl-cffi): New variable. (sbcl-cl-sqlite)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-cl-cffi-gtk-boot0, sbcl-cl-cffi-gtk-glib, sbcl-cl-cffi-gtk-gobject, sbcl-cl-cffi-gtk-gio, sbcl-cl-cffi-gtk-cairo, sbcl-cl-cffi-gtk-pango, sbcl-cl-cffi-gtk-gdk-pixbuf, sbcl-cl-cffi-gtk-gdk): Remove variables and merge their contents in ... (sbcl-cl-cffi-gtk): ... here. (sbcl-cl-webkit)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-usocket-boot0, sbcl-usocket-server): Remove variables and merge their contents in ... (sbcl-usocket): ... here. (sbcl-cl-annot)[arguments]: Remove. (sbcl-cl-syntax-annot, sbcl-cl-syntax-interpol): Remove variables and merge their contents in ... (sbcl-cl-syntax): ... here. (sbcl-cl-utilities)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-quri, sbcl-myway, sbcl-subseq, sbcl-smart-buffer)[native-inputs]: Remove 'prove-asdf'. (sbcl-fast-http)[native-inputs]: Remove 'prove-asdf' and 'cl-syntax-interpol'. Add 'cl-syntax'. (sbcl-static-vectors)[native-inputs]: Remove 'cffi-grovel'. Add 'cffi'. (sbcl-jonathan)[native-inputs]: Remove 'prove-asdf'. [inputs]: Remove 'cl-syntax-annot'. (sbcl-http-body)[native-inputs]: Remove 'prove-asdf'. (sbcl-lack-request, sbcl-lack-response, sbcl-lack-component, sbcl-lack-util, sbcl-lack-middleware-backtrace, sbcl-lack-middleware-static): Remove variables and merge their contents in ... (sbcl-lack): ... here. (sbcl-ningle)[native-inputs]: Remove 'prove-asdf'. [inputs]: Remove 'cl-syntax-annot', 'lack-request', 'lack-response' and 'lack-component'. Add 'lack'. (clack-commit, clack-revision, sbcl-clack-handler-fcgi, sbcl-clack-socket, sbcl-clack-handler-hunchentoot): Remove variables and merge their contents in ... (sbcl-clack): ... here. (sbcl-parse-declarations)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-burgled-batteries3)[inputs]: Remove 'cffi-grovel'. (sbcl-trivial-utf-8)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-iolib.asdf, sbcl-iolib.conf, sbcl-iolib.common-lisp, sbcl-iolib.base, sbcl-iolib.grovel, sbcl-iolib+syscalls, sbcl-iolib+multiplex, sbcl-iolib+streams, sbcl-iolib+sockets): Remove variables and merge their contents in ... (sbcl-iolib): ... here. (sbcl-cxml+xml, sbcl-cxml+dom, sbcl-cxml+klacks, sbcl-cxml+test): Remove variables and merge their contents in ... (sbcl-cxml): ... here. (sbcl-cl-cookie)[native-inputs]: Remove 'prove-asdf'. (sbcl-dexador)[native-inputs]: Remove 'prove-asdf' and 'lack-request'. Add 'lack". (sbcl-fare-quasiquote-optima, sbcl-fare-quasiquote-readtable, sbcl-fare-quasiquote-extras): Remove variables and merge their contents in ... (sbcl-fare-quasiquote): ... here. (sbcl-trivia.level0, sbcl-trivia.level1, sbcl-trivia.level2): Remove variables and merge their contents in ... (sbcl-trivia.trivial): ... here. (sbcl-trivia.balland2006, sbcl-trivia.ppcre, sbcl-trivia.quasiquote, sbcl-trivia.cffi): Remove variables and merge their contents in ... (sbcl-trivia): ... here. (sbcl-cl-str)[native-inputs]: Remove 'prove-asdf'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-dbus): New variable. (sbcl-s-sysdeps)[inputs]: Remove 'usocket-server'. (sbcl-periods-series): Remove variable and merge its content in ... (sbcl-periods): ... here. (sbcl-fprog): Remove variable and merge its content in ... (sbcl-cambl): ... here. (sbcl-cl-ledger)[inputs]: Remove 'periods-series'. Add 'periods'. (sbcl-serapeum)[inputs]: Remove 'trivia.quasiquote' and 'fare-quasiquote-extras'. Add 'fare-quasiquote'. (sbcl-stefil)[native-inputs]: Remove. [inputs]: Add swank. (sbcl-graph-dot, sbcl-graph-json): Remove variables and merge their contents in ... (sbcl-graph): ... here. (sbcl-foreign-array, sbcl-physical-dimension, sbcl-science-data): Remove variables and merge their contents in ... (sbcl-antik-base): ... here. (sbcl-gsll)[inputs]: Remove 'cffi-grovel', 'cffi-libffi' and 'foreign-array'. Add 'antik-base' and 'cffi'. (sbcl-antik)[inputs]: Remove 'physical-dimension". Add 'antik-base'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. Add 'fix-build' phase. (sbcl-symbol-munger-boot0): Remove variable and merge its content in ... (sbcl-symbol-munger): ... here. (sbcl-lisp-unit2-boot0): Remove variable and merge its content in ... (sbcl-lisp-unit2): ... here. (sbcl-cl-ana-boot0, sbcl-cl-ana.pathname-utils, sbcl-cl-ana.package-utils, sbcl-cl-ana.string-utils, sbcl-cl-ana.functional-utils, sbcl-cl-ana.list-utils, sbcl-cl-ana.generic-math, sbcl-cl-ana.math-functions, sbcl-cl-ana.calculus, sbcl-cl-ana.symbol-utils, sbcl-cl-ana.macro-utils, sbcl-cl-ana.binary-tree, sbcl-cl-ana.tensor, sbcl-cl-ana.error-propagation, sbcl-cl-ana.quantity, sbcl-cl-ana.table, sbcl-cl-ana.table-utils, sbcl-cl-ana.hdf-cffi, sbcl-cl-ana.int-char, sbcl-cl-ana.memoization, sbcl-cl-ana.typespec, sbcl-cl-ana.hdf-typespec, sbcl-cl-ana.hdf-utils, typed-table, sbcl-cl-ana.hdf-table, sbcl-cl-ana.gsl-cffi, sbcl-cl-ana.ntuple-table, sbcl-cl-ana.csv-table, sbcl-cl-ana.reusable-table, sbcl-cl-ana.linear-algebra, sbcl-cl-ana.lorentz, sbcl-cl-ana.clos-utils, sbcl-cl-ana.hash-table-utils, sbcl-cl-ana.map, sbcl-cl-ana.fitting, sbcl-cl-ana.histogram, sbcl-cl-ana.file-utils, sbcl-cl-ana.statistics, sbcl-cl-ana.gnuplot-interface, sbcl-cl-ana.plotting, sbcl-cl-ana.table-viewing, sbcl-cl-ana.serialization, sbcl-cl-ana.makeres, sbcl-cl-ana.makeres-macro, sbcl-cl-ana.makeres-block, sbcl-cl-ana.makeres-progress, sbcl-cl-ana.makeres-table, sbcl-cl-ana.makeres-graphviz, sbcl-cl-ana.makeres-branch, sbcl-cl-ana.utils, sbcl-cl-ana.statistical-learning): Remove variables and merge their contents in ... (sbcl-cl-ana): ... here. (sbcl-cl-libuv)[inputs]: Remove 'cffi-grovel'. (sbcl-cl-async-base, sbcl-cl-async-util, sbcl-cl-async-repl, sbcl-cl-async-ssl): Remove variables and merge their contents in ... (sbcl-cl-async): ... here. (sbcl-ltk-mw, sbcl-ltk-remote): Remove variables and merge their contents in ... (sbcl-ltk): ... here. [arguments]: Add 'fix-build' phase. (sbcl-hdf5-cffi)[inputs]: Remove 'cffi-grovel'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-cl-randist, sbcl-float-features, sbcl-function-cache, sbcl-type-r, sbcl-trivialib-type-unify, sbcl-specialized-function, sbcl-constantfold, sbcl-gtype, sbcl-numcl)[arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. (sbcl-pzmq)[inputs]: Remove 'cffi-grovel'. (sbcl-simple-date, sbcl-cl-postgres, sbcl-simple-date-postgrs-glue, sbcl-s-sql): Remove variables and merge their contents in ... (sbcl-postmodern): ... here. (sbcl-dbd-mysql, sbcl-dbd-postgres, sbcl-dbd-sqlite3): Remove variables and merge their contents in ... (sbcl-dbi): ... here. (sbcl-clsql-uffi, sbcl-clsql-sqlite3, sbcl-clsql-postgresql, sbcl-clsql-postgresql-socket3, sbcl-clsql-mysql): Remove variables and merge their contents in ... (sbcl-clsql): ... here. (sbcl-sycamore)[arguments]: Remove 'asd-file' keyword and add 'asd-files' keyword. (sbcl-osicat)[native-inputs]: Remove 'cffi-grovel'. (sbcl-clx-xembed, sbcl-quantile-estimator): Remove 'asd-system-name' keyword and add 'asd-systems' keyword. (sbcl-prometheus.collectors.sbcl, sbcl-prometheus.collectors.process, sbcl-prometheus.formats.test, sbcl-prometheus.exposers.hunchentoot, sbcl-prometheus.pushgateway): Remove variables and merge their contents in ... (sbcl-prometheus): ... here. (sbcl-sxql)[native-inputs]: Remove 'prove-asdf'. [inputs]: Remove 'cl-syntax-annot'. Add 'cl-syntax'. (sbcl-1am)[arguments]: Remove 'asd-system-name' keyword and add 'asd-systems' keyword. (sbcl-cl-rdkafka)[inputs]: Remove 'cffi-grovel'. (sbcl-clump-2-3-tree, sbcl-clum-binary-tree): Remove variables and merge their contents in ... (sbcl-clump): ... here. (sbcl-cluffer-base, sbcl-cluffer-standard-line, sbcl-cluffer-standard-buffer, sbcl-cluffer-simple-line, sbcl-cluffer-simple-buffer): Remove variables and merge their contents in ... (sbcl-cluffer): ... here. (sbcl-cl-libsvm-format, sbcl-cl-online-learning, sbcl-cl-random-forest)[native-inputs]: Remove 'prove-asdf'. (sbcl-cl-freetype2)[inputs]: Remove 'cffi-grovel'. (sbcl-clim-lisp, sbcl-clim-basic, sbcl-clim-core, sbcl-esa-mcclim, sbcl-mcclim-fonts, sbcl-automaton, sbcl-persistent, sbcl-drei-mcclim, sbcl-clim, sbcl-mcclim-backend-common, sbcl-mcclim-clx, sbcl-mcclim-fonts-truetype, sbcl-mcclim-fonts-clx-truetype, sbcl-mcclim-clx-truetype, sbcl-mcclim-fontconfig, sbcl-mcclim-harfbuzz, sbcl-mcclim-fonts-clx-truetype, sbcl-mcclim-clx-freetype, sbcl-mcclim-render, sbcl-mcclim-clx-fb, xbcl-mcclim-null, sbcl-clim-postscript-font, sbcl-clim-postscript, sbcl-clim-pdf, sbcl-mcclim-looks, sbcl-mcclim-franz, sbcl-mcclim-bezier-core, sbcl-mcclim-bezier-clx, sbcl-mcclim-bezier, sbcl-mcclim-bitmaps, sbcl-conditional-commands, sbcl-mcclim-layouts-tab, sbcl-mcclim-extensions, sbcl-mcclim-test-util, sbcl-mcclim-raster-image, sbcl-clim-examples): Remove variables and merge their contents in ... (sbcl-mcclim): ... here. (sbcl-mito-core, sbcl-mito-migration, sbcl-lack-middleware-mito): Remove variables and merge their contents in ... (sbcl-mito): ... here. (sbcl-kebab)[native-inputs]: Remove 'prove-asdf'. (sbcl-datafly)[native-inputs]: Remove 'prove-asdf' and 'dbd-sqlite3'. [inputs]: Remove 'cl-syntax-annot'. Add 'cl-syntax'. (sbcl-caveman)[inputs]: Remove 'lack-request', 'lack-response' and 'cl-syntax-annot'. Add 'lack' and 'cl-syntax'. [arguments]: Remove 'asd-file' and 'asd-system-name' keywords and add 'asd-files' and 'asd-systems' keywords. * gnu/packages/wm.scm (stumpwm, sbcl-stumpwm-ttf-fontsn, sbcl-stumpwm-pass, sbcl-stumpwm-globalwindows, sbcl-stumpwm-swm-gaps, sbcl-stumpwm-net, sbcl-stumpwm-wifi, sbcl-stumpwm-stumptray, sbcl-stumpwm-kbd-layouts): Remove 'asd-system-name' keyword and add 'asd-systems' keyword. (stumpwm-with-slynk)[arguments]: Remove references to variables that don't exist anymore. Guillaume Le Vaillant2020-09-12
* build-system: asdf: Switch from bundles to regular compilation.•••* gnu/packages/lisp.scm (sbcl, ecl)[native-search-paths]: Add 'XDG_CONFIG_DIRS'. * guix/build-system/asdf.scm (asdf-build): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. * guix/build/asdf-build-system.scm (%object-prefix, %lisp-source-install-prefix): Update variables. (install): Update variable. (main-system-name): New variable. (copy-source): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. (configure): New variable. (build, check): Replace 'asd-file' and 'asd-system-name' keywords by 'asd-files' and 'asd-systems'. (create-asd-file, symlink-asd-files): Remove variables. (create-asdf-configuration): New variable. (cleanup-files): Update variable. (%standard-phases): Remove 'create-asd-file' and 'symlink-asd-files' phases. Add 'configure' and 'create-asdf-configuration' phases. * guix/build/lisp-utils.scm (%bundle-install-prefix, normalize-dependency, inputs->asd-file-map, asdf-load-all, compile-system): Remove variables. (compile-systems): New variable. (system-dependencies, compiled-system, generate-system-definition): Remove variable. (test-system): Replace 'asd-file' parameter by 'asd-files'. (generate-executable-for-system): Update variable. (generate-dependency-links, make-asd-file, bundle-asd-file): Remove variables. (make-asdf-configuration): New variable. (build-program, build-image): Set 'XDG_CONFIG_DIRS'. (generate-executable): Update variable. Guillaume Le Vaillant2020-09-12
* ui: Lexicographically sort transaction entries based on their package name.•••* guix/ui.scm (show-manifest-transaction): Sort entries to be displayed in a tabulated view. Maxim Cournoyer2020-09-12
* ui: Refactor the package-strings helper in show-manifest-transaction.•••* guix/ui.scm (show-manifest-transaction)[package-strings]: Add an OLD-VERSIONS keyword parameter. Absorb the code path previously found in the upgrade-string. Remove upgrade-string. (show-manifest-transaction): Adjust to the above changes. Maxim Cournoyer2020-09-12
* doc: Document the use of snippets vs phases.•••* doc/contributing.texi (Snippets versus phases): New section. Maxim Cournoyer2020-09-12
* gnu: python-aiodns: Propagate python-pycares.•••* gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares... [propagated-inputs]: ...to here. Danny Milosavljevic2020-09-12
* gnu: Add poezio.•••* gnu/packages/messaging.scm (poezio): New variable. Raghav Gururajan2020-09-12
* gnu: Add python-potr.•••* gnu/packages/python-crypto.scm (python-potr): New variable. Raghav Gururajan2020-09-12
* gnu: Add python-slixmpp.•••* gnu/packages/python-xyz.scm (python-slixmpp): New variable. Raghav Gururajan2020-09-12
* gnu: ebusd: Enable MQTT support.•••* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto. Danny Milosavljevic2020-09-12
* gnu: Add mosquitto.•••* gnu/packages/messaging.scm (mosquitto): New variable. Danny Milosavljevic2020-09-12
* gnu: lldpd: Update to 1.0.6.•••* gnu/packages/networking.scm (lldpd): Update to 1.0.6. Tobias Geerinckx-Rice2020-09-11
* gnu: enet: Update to 1.3.16.•••* gnu/packages/networking.scm (enet): Update to 1.3.16. Tobias Geerinckx-Rice2020-09-11
* gnu: batctl: Update to 2020.3.•••* gnu/packages/networking.scm (batctl): Update to 2020.3. Tobias Geerinckx-Rice2020-09-11
* Revert "gnu: dovecot: Set moduledir to global directory."•••This reverts commit db0109be42547d5dbb0fc1eb8ae30ccc968ed88b. Same reason as commit d9d88c2ff0d367599d0a851ccf9377c4e21079d6. Tobias Geerinckx-Rice2020-09-11
* Revert "services: dovecot: Use modules via symlink to system profile."•••This reverts commit bcfe0f0c1e9a2b91049d7c6c591c7f0c6a002c14 for now. It breaks most current use(r)s of the Dovecot service and needs to be combined with an extra modules configuration field of some kind. See <https://issues.guix.gnu.org/43347>. Tobias Geerinckx-Rice2020-09-11
* gnu: padthv1: Update to 0.9.17.•••* gnu/packages/music.scm (padthv1): Update to 0.9.17. [inputs]: Replace fftw with fftwf. Tobias Geerinckx-Rice2020-09-11
* gnu: libetpan: Update to 1.9.4.•••* gnu/packages/mail.scm (libetpan): Update to 1.9.4. Tobias Geerinckx-Rice2020-09-11
* gnu: bsequencer: Update to 1.6.0.•••* gnu/packages/music.scm (bsequencer): Update to 1.6.0. Ricardo Wurmus2020-09-11
* gnu: r-adaptivesparsity: End build phase on #T.•••* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase "link-against-armadillo" with Boolean. Ricardo Wurmus2020-09-11
* gnu: r-adaptivesparsity: Fix case of "Gaussian".•••* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo. Ricardo Wurmus2020-09-11
* gnu: r-qtl: Use CRAN-URI.•••* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit mirror URL. Ricardo Wurmus2020-09-11
* gnu: r-qtl: Correct indentation.•••* gnu/packages/cran.scm (r-qtl): Reindent. [description]: Reflow paragraphs. Ricardo Wurmus2020-09-11
* gnu: r-absfiltergsea: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here... * gnu/packages/cran.scm (r-absfiltergsea): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-diversitree: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-diversitree): Move from here... * gnu/packages/cran.scm (r-diversitree): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-phangorn: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-phangorn): Move from here... * gnu/packages/cran.scm (r-phangorn): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-seurat: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-seurat): Move from here... * gnu/packages/cran.scm (r-seurat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-maldiquant: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here... * gnu/packages/cran.scm (r-maldiquant): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-seqminer: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-seqminer): Move from here... * gnu/packages/cran.scm (r-seqminer): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-qtl2: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-qtl2): Move from here... * gnu/packages/cran.scm (r-qtl2): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-qtl: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-qtl): Move from here... * gnu/packages/cran.scm (r-qtl): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-igraph: Move to (gnu packages cran).•••* gnu/packages/graph.scm (r-igraph): Move from here... * gnu/packages/cran.scm (r-igraph): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-diffusionmap: Move to (gnu packages cran).•••* gnu/packages/graph.scm (r-diffusionmap): Move from here... * gnu/packages/cran.scm (r-diffusionmap): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-adaptivesparsity: Move to (gnu packages cran).•••* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here... * gnu/packages/cran.scm (r-adaptivesparsity): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun2020-09-11
* gnu: r-codedepends: Comment why it is in bioconductor.scm.•••* gnu/packages/bioconductor.scm (r-codedepends): Add comment. zimoun2020-09-11
* gnu: Add r-fhtest.•••* gnu/packages/bioconductor.scm (r-fhtest): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo2020-09-11
* gnu: Add r-interval.•••* gnu/packages/bioconductor.scm (r-interval): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo2020-09-11
* gnu: Add r-perm.•••* gnu/packages/cran.scm (r-perm): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo2020-09-11
* gnu: Add r-mlecens.•••* gnu/packages/cran.scm (r-mlecens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo2020-09-11
* gnu: Add r-icens.•••* gnu/packages/bioconductor.scm (r-icens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo2020-09-11
* gnu: r-tidymodels: Update to 0.1.1.•••* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1. [propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and r-tidytext; add r-modeldata and r-tidyr. [native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc. Ricardo Wurmus2020-09-11
* gnu: r-infer: Update to 0.5.3.•••* gnu/packages/cran.scm (r-infer): Update to 0.5.3. Ricardo Wurmus2020-09-11
* gnu: Add r-modeldata.•••* gnu/packages/cran.scm (r-modeldata): New variable. Ricardo Wurmus2020-09-11
* gnu: r-parsnip: Update to 0.1.3.•••* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3. Ricardo Wurmus2020-09-11
* gnu: r-tidytext: Update to 0.2.5.•••* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5. [propagated-inputs]: Remove r-stopwords; add r-tibble. Ricardo Wurmus2020-09-11
* gnu: r-tidypredict: Update to 0.4.6.•••* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6. Ricardo Wurmus2020-09-11
* gnu: r-tune: Update to 0.1.1.•••* gnu/packages/cran.scm (r-tune): Update to 0.1.1. [propagated-inputs]: Add r-vctrs. Ricardo Wurmus2020-09-11
* gnu: r-dials: Update to 0.0.8.•••* gnu/packages/cran.scm (r-dials): Update to 0.0.8. Ricardo Wurmus2020-09-11
* gnu: r-yardstick: Update to 0.0.7.•••* gnu/packages/cran.scm (r-yardstick): Update to 0.0.7. [propagated-inputs]: Remove r-rcpp. Ricardo Wurmus2020-09-11
* gnu: r-workflows: Update to 0.1.3.•••* gnu/packages/cran.scm (r-workflows): Update to 0.1.3. Ricardo Wurmus2020-09-11