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* gnu: privoxy: Update to 3.0.28.Tobias Geerinckx-Rice2019-01-08
| | | | * gnu/packages/tor.scm (privoxy): Update to 3.0.28.
* gexp: 'gexp->script' does not emit load-path expression when unnecessary.Ludovic Courtès2019-01-07
| | | | | | | | | | This removes two elements from %LOAD-PATH and %LOAD-COMPILED-PATH of the 'guix' command and thus further reduces the number of 'stat' calls it makes. * guix/gexp.scm (load-path-expression): Return #f when MODULES and EXTENSIONS are both empty. (gexp->script): Don't emit anything when SET-LOAD-PATH is #f.
* self: Move all modules into a single directory.Ludovic Courtès2019-01-07
| | | | | | | | | | | | | | | | | | | | This halves the number of elements in %LOAD-PATH and %LOAD-COMPILED-PATH and halves the number of 'stat' calls as reported by: env -i $(type -P guix) build -e '(@ (gnu packages base) coreutils)' -nd * guix/self.scm (node-source+compiled, guile-module-union): New procedures. (guix-command): Remove 'compiled-modules' parameter. Remove 'source-directories' and 'object-directories' variables and add 'module-directory'. Change command so that it adds nothing but MODULE-DIRECTORY to %LOAD-PATH and %LOAD-COMPILED-PATH. (whole-package): Remove #:compiled-modules. Assume MODULES contains 'share/guile/site' and 'lib/guile' and adjust code accordingly. (compiled-guix): When PULL-VERSION is 1, use 'node-source+compiled' only. Remove #:compiled-modules argument to 'whole-package'. * guix/channels.scm (whole-package-for-legacy): Add 'module+compiled' and pass it to 'whole-package'.
* gnu: libnet: Update to 1.2-rc3.Rutger Helling2019-01-07
| | | | | * gnu/packages/networking.scm (libnet): Update to 1.2-rc3. [source]: Use git-fetch.
* import: opam: Parse comments.Julien Lepiller2019-01-07
| | | | * guix/import/opam.scm: Add comment support in parser.
* gnu: ocaml-graph: Add upstream-name.Julien Lepiller2019-01-07
| | | | * gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name.
* import: opam: Add updater.Julien Lepiller2019-01-07
| | | | * guix/import/opam.scm (%opam-updater): New variable.
* import: opam: Add recursive option.Julien Lepiller2019-01-07
| | | | | | * guix/script/import/opam.scm: Add recursive option. * guix/import/opam.scm (opam->guix-package): return two values. (opam-recursive-import): New variable.
* gnu: Move coq packages from ocaml to coq.Julien Lepiller2019-01-07
| | | | | | * gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp) (coq-coquelicot, coq-bignums, coq-interval): Move from here... * gnu/packages/coq.scm: ... to here. New file.
* gnu: emacs-guix: Update to 0.5.1.1.Alex Kost2019-01-07
| | | | * gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1.
* gnu: containerd: Update synopsis.Danny Milosavljevic2019-01-07
| | | | * gnu/packages/docker.scm (containerd)[synopsis]: Modify.
* gnu: containerd: Enable tests.Danny Milosavljevic2019-01-07
| | | | * gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?.
* gnu: Add missing use-module clause.Ricardo Wurmus2019-01-07
| | | | | | This is a follow-up to 4e5b8f7215b8e0ae864b954cd511404098fd2840. * gnu/packages/docker.scm: Add missing use-module clause.
* gnu: Add r-corpcor.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-corpcor): New variable.
* gnu: Add r-ddrtree.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-ddrtree): New variable.
* gnu: Add r-qlcmatrix.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-qlcmatrix): New variable.
* gnu: Add r-combinat.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-combinat): New variable.
* gnu: Add r-densityclust.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-densityclust): New variable.
* gnu: Add r-sparsesvd.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-sparsesvd): New variable.
* gnu: Add r-docopt.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-docopt): New variable.
* gnu: Add r-rvcheck.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-rvcheck): New variable.
* gnu: Add r-tidytree.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-tidytree): New variable.
* gnu: Add r-colorramps.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-colorramps): New variable.
* gnu: Add r-wordcloud.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-wordcloud): New variable.
* gnu: Add r-waveslim.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-waveslim): New variable.
* gnu: Add r-tiff.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-tiff): New variable.
* gnu: Add r-fftwtools.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-fftwtools): New variable.
* gnu: Add r-softimpute.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-softimpute): New variable.
* gnu: Add r-adgoftest.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-adgoftest): New variable.
* gnu: Add r-gsl.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-gsl): New variable.
* gnu: Add r-stabledist.Ricardo Wurmus2019-01-07
| | | | * gnu/packages/cran.scm (r-stabledist): New variable.
* gnu: perl-lingua-translit: Update to 0.28.Efraim Flashner2019-01-07
| | | | * gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28.
* gnu: Add containerd.Danny Milosavljevic2019-01-07
| | | | * gnu/packages/docker.scm (containerd): New variable.
* gnu: Add dummy linker for arm-elf.Danny Milosavljevic2019-01-07
| | | | * gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf.
* gnu: Move R packages from geo.scm to cran.scm.Ricardo Wurmus2019-01-07
| | | | | | * gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere, r-ggmap): Move from here... * gnu/packages/cran.scm: ...to here.
* gnu: emacs-ess: Move to (gnu packages statistics).Ricardo Wurmus2019-01-07
| | | | | * gnu/packages/emacs.scm (emacs-ess): Move from here... * gnu/packages/statistics.scm (emacs-ess): ...to here.
* gnu: python-rpy2: Move to (gnu packages statistics).Ricardo Wurmus2019-01-07
| | | | | * gnu/packages/python.scm (python-rpy2): Move from here... * gnu/packages/statistics.scm (python-rpy2): ...to here.
* gnu: Remove reference to (gnu packages statistics).Ricardo Wurmus2019-01-07
| | | | * gnu/packages/web.scm: Remove obsolete use-module clause.
* gnu: r-rmysql: Move from databases.scm to cran.scmRicardo Wurmus2019-01-07
| | | | | * gnu/packages/databases.scm (r-rmysql): Move from here... * gnu/packages/cran.scm (r-rmysql): ...to here.
* gnu: biber: Update to 2.12.Jelle Licht2019-01-07
| | | | | | | | * gnu/packages/tex.scm (biber): Update to 2.12. [source]: Use 'git-fetch'. Add patch. [inputs]: Add perl-file-slurper. Remove perl-file-slurp. * gnu/packages/patches/biber-fix-encoding-write.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* gnu: r-feather: Move from serialization.scm to cran.scm.Ricardo Wurmus2019-01-07
| | | | | * gnu/packages/serialization.scm (r-feather): Move from here... * gnu/packages/cran.scm (r-feather): ...to here.
* gnu: Fix top-level circular references between emacs.scm and llvm.scm.Ludovic Courtès2019-01-07
| | | | | | | | | | Previously, loading either of these two modules could fail somewhat non-deterministically because each top-level was referencing a variable defined by the other module's top-level. * gnu/packages/emacs.scm (package-elisp-from-package): Move to... * gnu/packages/llvm.scm (package-elisp-from-package): Here. Keep private.
* gnu: perl-file-slurper: Update to 0.012.Jelle Licht2019-01-07
| | | | | * gnu/packages/perl.scm (perl-file-slurper): Update to 0.012. [native-inputs]: Add perl-test-warnings.
* gnu: Move R packages from web.scm to cran.scm.Ricardo Wurmus2019-01-07
| | | | | | | | * gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools, r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny, r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these from here... * gnu/packages/cran.scm: ...to here.
* Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files"Pierre Neidhardt2019-01-07
| | | | This reverts commit 5bc2e14add6433adbade3ccdf28c60e57334c20a.
* gnu: mantis: Limit to x86_64-linux.Efraim Flashner2019-01-07
| | | | * gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field.
* gnu: package-elisp-from-package: Clarify docstring.Pierre Neidhardt2019-01-07
| | | | * gnu/packages/emacs.scm (package-elisp-from-package)[docstring]: Clarify.
* gnu: Use package-elisp-from-package for clangs emacs lisp filesTim Gesthuizen2019-01-07
| | | | | | | | | Use package-elisp-from-package for emacs-clang-format and emacs-clang-rename. Also remove package-from-clang-elisp-file as it is not needed anymore. * gnu/packages/llvm.scm (emacs-clang-format): Use package-elisp-from-package * gnu/packages/llvm.scm (emacs-clang-rename): Use package-elisp-from-package * gnu/packages/llvm.scm (package-from-clang-elisp-file): Remove function
* gnu: Add package-elisp-from-packageTim Gesthuizen2019-01-07
| | | | | | | Add a function to generate package definitions that packages single elisp files from other packages. * gnu/packages/emacs.scm (package-elisp-from-package): New function
* gnu: python2-fastlmm: Move to machine-learning.scm.Ludovic Courtès2019-01-07
| | | | | | | | This is a step towards removing OCaml modules from the closure of (gnu packages python). * gnu/packages/python.scm (python2-fastlmm): Move to... * gnu/packages/machine-learning.scm (python2-fastlmm): ... here.
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