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* gnu: Add kentutils.Ricardo Wurmus2017-06-23
| | | | * gnu/packages/bioinformatics.scm (kentutils): New variable.
* gnu: Add retux.Kei Kebreau2017-06-22
| | | | * gnu/packages/games.scm (retux): New variable.
* gnu: isc-dhcp: Update bundled bind to 9.9.10-P1.Leo Famulari2017-06-22
| | | | * gnu/packages/admin.scm (isc-dhcp): Update bundled bind to 9.9.10-P1.
* gnu: higan: Update to 102.Rutger Helling2017-06-22
| | | | | | * gnu/packages/games.scm (higan): Update to 102. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ddate.nee2017-06-22
| | | | | | * gnu/packages/linux.scm (ddate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-xsge: Update to 2017.06.09.Kei Kebreau2017-06-22
| | | | * gnu/packages/game-development.scm (python-xsge): Update to 2017.06.09.
* gnu: python-sge-pygame: Update to 1.5.Kei Kebreau2017-06-22
| | | | | | * gnu/packages/game-development.scm (python-sge-pygame, python2-sge-pygame): Update to 1.5. [inputs]: Add python-uniseg.
* gnu: Add python-uniseg.Kei Kebreau2017-06-22
| | | | | * gnu/packages/python.scm (python-uniseg, python2-uniseg): New variables.
* gnu: emacs-org: Update to 20170622.Nicolas Goaziou2017-06-22
| | | | * gnu/packages/emacs.scm (emacs-org): Update to 20170622 a.k.a. Org 9.0.9.
* gnu: grfcodec: Fix a typo.Kei Kebreau2017-06-22
| | | | | * gnu/packages/game-development.scm (grfcodec)[description]: Reorder the acronym and its expansion using @dfn.
* gnu: nml: Fix a typo.Kei Kebreau2017-06-22
| | | | | * gnu/packages/game-development.scm (nml)[description]: Reorder the acronym and its expansion using @dfn. Delete a duplicated word.
* gnu: python2-bx-python: Update to 0.7.3.Ricardo Wurmus2017-06-22
| | | | * gnu/packages/bioinformatics.scm (python2-bx-python): Update to 0.7.3.
* gnu: julia: Update to 0.6.0.Ricardo Wurmus2017-06-22
| | | | | | | | | * gnu/packages/julia.scm (libuv-julia): Update to 1.9.0-5.52d72a52. (julia): Update to 0.6.0. [arguments]: Remove phase "fix-llvm-flag"; add phase "disable-documentation"; use threaded fftw variant in phase "hardcode-soname-map"; disable "file" tests in phase "disable-broken-tests"; add "USE_LLVM_SHLIB=0" to make flags. [native-inputs]: Add "unicode-data".
* gnu: surfraw: Fix broken symlinks in manpages.ng02017-06-22
| | | | | | * gnu/packages/web.scm (surfraw)[arguments]: Add new 'compress-elvi.1sr' phase. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: qtsensors: Lengthen test timeout.Efraim Flashner2017-06-22
| | | | | * gnu/packages/qt.scm (qtsensors)[arguments]: Lengthen test timeout so it passes on slower machines.
* gnu: Remove unnecessary module import.Ludovic Courtès2017-06-22
| | | | | | This is a followup to d2885c83929b66a0cf98e740372bddb7e8787631. * gnu/packages/version-control.scm: Remove needless module import.
* daemon: Set TCP_NODELAY and TCP_QUICKACK on remote sockets.Ludovic Courtès2017-06-22
| | | | | * nix/nix-daemon/nix-daemon.cc (acceptConnection): Set TCP_NODELAY and TCP_QUICKACK on REMOTE.
* daemon: '--listen' can be passed several times, can specify TCP endpoints.Ludovic Courtès2017-06-22
| | | | | | | | | | | | | | | | * nix/nix-daemon/guix-daemon.cc (DEFAULT_GUIX_PORT): New macro. (listen_options): New variable. (parse_opt): Push back '--listen' options to LISTEN_OPTIONS. (open_unix_domain_socket, open_inet_socket) (listening_sockets): New functions. (main): Use it. Pass SOCKETS to 'run'. * nix/nix-daemon/nix-daemon.cc (matchUser): Remove. (SD_LISTEN_FDS_START): Remove. (acceptConnection): New function. (daemonLoop): Rewrite to take a vector of file descriptors, to select(2) on them, and to call 'acceptConnection'. (run): Change to take a vector of file descriptors. * tests/guix-daemon.sh: Add test.
* store: Define a default port for TCP connections.Ludovic Courtès2017-06-22
| | | | | | * guix/store.scm (%default-guix-port): New variable. (connect-to-daemon)[connect]: Use it when (uri-port uri) is #f. * doc/guix.texi (The Store): Mention the default port number.
* store: Pass a socket type hint to 'getaddrinfo'.Ludovic Courtès2017-06-22
| | | | | * guix/store.scm (open-inet-socket): Pass hints in the 'getaddrinfo' call.
* gnu: webkitgtk: Update to 2.16.4 [fixes CVE-2017-2538].Leo Famulari2017-06-22
| | | | * gnu/packages/webkit.scm (webkitgtk): Update to 2.16.4.
* gnu: python-drmaa: Update source URL.Ricardo Wurmus2017-06-22
| | | | * gnu/packages/python.scm (python-drmaa)[source]: Use pypi-uri.
* gnu: mbedtls-apache: Update to 2.5.1.Leo Famulari2017-06-22
| | | | * gnu/packages/tls.scm (mbedtls-apache): Update to 2.5.1.
* gnu: openvpn: Update to 2.4.3 [fixes CVE-2017-{7508,7512,7520,7521,7522}].Leo Famulari2017-06-22
| | | | | | | See 'Changes.rst' in the source distribution for more information about the security-related changes. * gnu/packages/vpn.scm (openvpn): Update to 2.4.3.
* gnu: Update calibre to 3.0.0.Roel Janssen2017-06-22
| | | | | | * gnu/local.mk: Remove patch. * gnu/packages/ebook.scm (calibre): Update to 3.0.0. * gnu/packages/patches/calibre-dont-load-remote-icons.patch: Remove file.
* gnu: propeller-gcc: Default to version 4.Ricardo Wurmus2017-06-21
| | | | | | | * gnu/packages/embedded.scm (propeller-gcc): Rename this... (propeller-gcc-6): ...to this. (propeller-gcc-4): Inherit from propeller-gcc-6. (propeller-gcc): New alias for propeller-gcc-4.
* gnu: knot: Update to 2.5.1.Tobias Geerinckx-Rice2017-06-21
| | | | | | * gnu/packages/dns.scm (knot): Update to 2.5.1. [inputs]: Add python-2 and python2-lmdb. [arguments]: Adapt #:configure-flags. Add ‘wrap-python-scripts’ phase.
* gnu: Add python-lmdb.Tobias Geerinckx-Rice2017-06-21
| | | | * gnu/packages/databases.scm (python-lmdb, python2-lmdb): New variables.
* gnu: lmdb: Expand description.Tobias Geerinckx-Rice2017-06-21
| | | | | * gnu/packages/databases.scm (lmdb)[synopsis]: Capitalise. [description]: Elaborate.
* gnu: python-pycodestyle: Update to 2.3.1.Tobias Geerinckx-Rice2017-06-21
| | | | * gnu/packages/python.scm (python-pycodestyle): Update to 2.3.1.
* gnu: cracklib: Fix up description.Tobias Geerinckx-Rice2017-06-21
| | | | | * gnu/packages/password-utils.scm (cracklib)[description]: Fix typos, add mark-up, and drop unclear reference to the ancient ‘Crack 5’ tool.
* gnu: libpwquality: Update to 1.4.0.Tobias Geerinckx-Rice2017-06-21
| | | | * gnu/packages/password-utils.scm (libpwquality): Update to 1.4.0.
* gnu: Remove unused python-flake8-2.2.4.Tobias Geerinckx-Rice2017-06-21
| | | | * gnu/packages/python.scm (python-flake8-2.2.4): Remove variable.
* gnu: python-hacking: Update to 0.13.0.Tobias Geerinckx-Rice2017-06-21
| | | | | | | | * gnu/packages/openstack.scm (python-hacking): Update to 0.13.0. [arguments]: Re-enable tests. [propagated-inputs]: Use latest python-flake8. [native-inputs]: Add python-eventlet, python-mock, python-reno, and python-testrepository for tests.
* gnu: python-eventlet: Skip failing test phase.Tobias Geerinckx-Rice2017-06-21
| | | | * gnu/packages/python.scm (python-eventlet)[arguments]: Disable tests.
* gnu: python-vobject: Update to 0.9.4.1.Tobias Geerinckx-Rice2017-06-21
| | | | * gnu/packages/python.scm (python-vobject): Update to 0.9.4.1.
* gnu: mpd: Build with the default GCC.Leo Famulari2017-06-21
| | | | * gnu/packages/mpd.scm (mpd)[native-inputs]: Remove gcc-5.
* gnu: opus-tools: Update to 0.1.10.Leo Famulari2017-06-21
| | | | | * gnu/packages/xiph.scm (opus-tools): Update to 0.1.10. [home-page]: Use HTTPS URL.
* gnu: opus: Update to 1.2.Leo Famulari2017-06-21
| | | | | * gnu/packages/xiph.scm (opus): Update to 1.2. [home-page]: Use HTTPS URL.
* gnu: gsl: Update to 2.4.Arun Isaac2017-06-21
| | | | | * gnu/packages/maths.scm (gsl): Update to 2.4. [arguments]: Remove #:parallel-tests?.
* gnu: services: use seconds instead of duration strings.Julien Lepiller2017-06-21
| | | | | | | * gnu/services/dns.scm (zone-file, knot-policy-configuration): Use numbers instead of duration strings. (verify-knot-policy-configuration): Fix typo. * doc/guix.texi (DNS Services): Update documentation.
* environment: Disable profile collision checks.Ludovic Courtès2017-06-21
| | | | | | | | | | | Reported by Efraim Flashner. This is a followup to a654dc4bcf7c8e205bdefa1a1d5f23444dd22778. * guix/profiles.scm (profile-derivation): Add #:allow-collisions? and honor it. * guix/scripts/environment.scm (inputs->profile-derivation): Pass #:allow-collisions? #f to 'profile-derivation'. * tests/guix-environment.sh: Test "guix environment guix".
* gnu: a2ps: Build reproducibly.Ludovic Courtès2017-06-21
| | | | | * gnu/packages/pretty-print.scm (a2ps)[source](modules, snippet): New fields.
* services: network-manager: Specify a default value.Ludovic Courtès2017-06-21
| | | | | * gnu/services/networking.scm (network-manager-service-type)[default-value]: New field.
* profiles: Move 'manifest-entry-dependencies' user after definition.Ludovic Courtès2017-06-21
| | | | | | | Reported by Efraim Flashner. * guix/profiles.scm (manifest-transitive-entries): Move after <manifest-entry> definition.
* gnu: efl: Add missing inputs.Efraim Flashner2017-06-21
| | | | | * gnu/packages/enlightenment.scm (efl)[inputs]: Add libxau, libxdamage, libxfixes, libxrender. Remove libxkbfile.
* guix package: '--search-paths' shows search paths from propagated inputs.Ludovic Courtès2017-06-21
| | | | | * guix/scripts/package.scm (process-query) <'search-paths>: Use 'manifest-transitive-entries' instead of 'manifest-entries'.
* profiles: Catch and report collisions in the profile.Ludovic Courtès2017-06-21
| | | | | | | | | | * guix/profiles.scm (&profile-collision-error): New error condition. (manifest-transitive-entries, manifest-entry-lookup, lower-manifest-entry) (check-for-collisions): New procedures. (profile-derivation): Add call to 'check-for-collisions'. * guix/ui.scm (call-with-error-handling): Handle '&profile-collision-error'. * tests/profiles.scm ("collision", "collision of propagated inputs") ("no collision"): New tests.
* guix package: Always upgrade packages that have propagated inputs.Ludovic Courtès2017-06-21
| | | | | * guix/scripts/package.scm (transaction-upgrade-entry): Always upgrade packages that have propagated inputs.
* profiles: Manifest entries keep a reference to their parent entry.Ludovic Courtès2017-06-21
| | | | | | | | | | | * guix/profiles.scm (<manifest-entry>)[parent]: New field. (package->manifest-entry): Add #:parent parameter. Fill out the 'parent' field of <manifest-entry>; pass #:parent in recursive calls. * guix/profiles.scm (sexp->manifest)[sexp->manifest-entry]: New procedure. Use it for version 3. * tests/profiles.scm ("manifest-entry-parent"): New procedure. ("read-manifest")[entry->sexp]: Add 'manifest-entry-parent' to the result.
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