| Commit message (Collapse) | Author | Age |
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* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
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* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
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* gnu/packages/cran.scm (r-bbmle): New variable.
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* gnu/packages/cran.scm (r-rsofia): New variable.
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* gnu/packages/bioinformatics.scm (r-hitc): New variable.
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* gnu/packages/bioinformatics.scm (r-fithic): New variable.
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* gnu/packages/bioinformatics.scm (r-sushi): New variable.
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* gnu/packages/cran.scm (r-vioplot): New variable.
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* gnu/packages/cran.scm (r-sm): New variable.
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* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
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* gnu/packages/bioinformatics.scm (r-gviz): New variable.
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* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
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* gnu/packages/cran.scm (r-hardyweinberg): New variable.
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* gnu/packages/cran.scm (r-mice): New variable.
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* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
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* gnu/packages/bioinformatics.scm (r-erma): New variable.
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* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
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* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
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* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
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* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
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* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
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* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
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* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
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* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
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* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
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* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
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* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
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* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
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* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
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* gnu/packages/xorg.scm (bdftopcf): Update to 1.1.
[native-inputs]: Change from LIBXFONT to LIBXFONT2.
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* gnu/packages/image-viewers.scm (feh): Update to 2.22.2.
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* gnu/packages/patches/gcc-4-compile-with-gcc-5.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gcc.scm (gcc-4.7): Use it.
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* gnu/packages/web.scm (websockify): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/python.scm (python-networkx2, python2-networkx2): New variables.
* gnu/local.mk (dist_patch_DATA): Register 'python-networkx2-reproducible-build.patch'.
* gnu/packages/patches/python-networkx2-reproducible-build.patch: New file.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/graphviz.scm (python-pydot, python2-pydot): New variables.
Modified-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/version-control.scm (mercurial): Update to 4.4.1.
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* gnu/packages/vim.scm (vim): Update to 8.0.1274.
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* gnu/packages/mail.scm (notmuch): Update to 0.25.2.
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Syntax help supplied by bavier@member.fsf.org
* gnu/packages/linux.scm (libfabric)[inputs]: Only use psm as an input
on systems where psm is supported.
* gnu/packages/mpi.scm (openmpi)[inputs]: Same.
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* gnu/packages/linux.scm (psm)[supported-systems]: New field, limit to
i686-linux and x86_64-linux.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.2.2.
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* gnu/packages/video.scm (mediainfo)[arguments]: Change to the build
directory before executing the autogen script.
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* gnu/packages/linux.scm (make-linux-libre): When cross-compiling,
"kconfig" field is in native-inputs variable. So config is always #f
when cross-compiling linux.
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* build-aux/hydra/gnu-system.scm (package->job): Create a 'base.' job
when PACKAGE is a member of BASE-PACKAGES.
(all-packages)[adjust]: New procedure.
Fold over %FINAL-INPUTS and add it to the result.
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* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM.
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* gnu/packages/linux.scm (libfabric)[inputs]: Add PSM.
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* gnu/packages/linux.scm (psm): New variable.
* gnu/packages/patches/psm-arch.patch,
gnu/packages/patches/psm-ldflags.patch,
gnu/packages/patches/psm-repro.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
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* gnu/packages/package-management.scm (diffoscope): Update to 88.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/wm.scm (awesome): Update to 4.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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While not an optimal solution (see comment), this makes GDM functional.
* gnu/services/xorg.scm (gdm-shepherd-service): Set PATH and XDG_DATA_DIRS
environment variables.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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