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* gnu: Add pigx-scrnaseq.Ricardo Wurmus2018-03-16
| | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq): New variable.
* gnu: kentutils: Build with mariadb.Ricardo Wurmus2018-03-16
| | | | | * gnu/packages/bioinformatics.scm (kentutils)[inputs]: Replace mysql with mariadb.
* linux-initrd: Autoload known-module-aliases, again.Mark H Weaver2018-03-15
| | | | | | Fixes a regression introduced in 8ab10c19d72caab7459034a6e72b0117d7c5cec8. * gnu/system/mapped-devices.scm: Autoload 'known-module-aliases'.
* gnu: linux-libre: Update to 4.15.10.Mark H Weaver2018-03-15
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.10. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.27.Mark H Weaver2018-03-15
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.27. (%linux-libre-4.14-hash): Update hash.
* linux-initrd: Move 'check-device-initrd-modules' elsewhere.Ludovic Courtès2018-03-15
| | | | | | | | | | | | This mostly reverts ca23693d280de5c4031058da4d3041d830080484, which introduced a circular dependency between (gnu system linux-initrd) and (gnu system mapped-devices). Reported by Eric Bavier. * gnu/system/linux-initrd.scm (check-device-initrd-modules): Move to... * gnu/system/mapped-devices.scm (check-device-initrd-modules): ... here. * po/guix/POTFILES.in: Adjust accordingly.
* gnu: idris: Provide the right versions of dependencies.Alex ter Weele2018-03-15
| | | | | | | | | | | | Previously it would fail to build. See <https://bugs.gnu.org/30741>. * gnu/packages/idris.scm (idris)[inputs]: alphebetize ghc-vector-binary-instances and ghc-async. Use ghc-aeson-1.1.2.0, ghc-cheapskate-0.1.0.5, and ghc-trifecta-1.6.2.1. Remove ghc-aeson, ghc-cheapskate, ghc-parsers, ghc-tasty, ghc-tasty-golden, ghc-tasty-rerun, ghc-trifecta, and ghc-zlib. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-cheapskate-0.1.0.5.Alex ter Weele2018-03-15
| | | | | | * gnu/packages/idris.scm (ghc-cheapskate-0.1.0.5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-trifecta-1.6.2.1.Alex ter Weele2018-03-15
| | | | | | * gnu/packages/idris.scm (ghc-trifecta-1.6.2.1): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-aeson-1.1.2.0.Alex ter Weele2018-03-15
| | | | | | * gnu/packages/idris.scm (ghc-aeson-1.1.2.0): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: qtox: Wrap executable and fix misplaced comma (unquote).Diego Nicola Barbato2018-03-15
| | | | | | | | * gnu/packages/messaging.scm (qtox)[arguments]: Add phase "wrap-executable". [inputs]: Fix misplaced comma (unquote). Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* vm: Use 'invoke' instead of 'system*'.Ludovic Courtès2018-03-15
| | | | | | | * gnu/build/vm.scm (load-in-linux-vm, initialize-partition-table) (create-ext-file-system, create-fat-file-system) (install-efi, make-iso9660-image): Use 'invoke' instead of (unless (zero? (system* ...)) (error ...)).
* gnu: dmenu: Update to 4.8.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/suckless.scm (dmenu): Update to 4.8.
* gnu: you-get: Update to 0.4.1040.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/video.scm (you-get): Update to 0.4.1040.
* gnu: intel-gpu-tools: Update to 1.22.Tobias Geerinckx-Rice2018-03-15
| | | | | * gnu/packages/admin.scm (intel-gpu-tools): Update to 1.22. [inputs]: Add eudev.
* gnu: libburn: Update to 1.4.8.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/cdrom.scm (libburn): Update to 1.4.8.
* gnu: libisofs: Fix description typos.Tobias Geerinckx-Rice2018-03-15
| | | | | * gnu/packages/cdrom.scm (libisofs)[description]: Spell ‘file system’ as ‘file system’.
* gnu: libisofs: Update to 1.4.8.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/cdrom.scm (libisofs): Update to 1.4.8.
* gnu: gtksourceview: Update to 3.24.7.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/gtk.scm (gtksourceview): Update to 3.24.7.
* gnu: xdg-user-dirs: Update to 0.17.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/freedesktop.scm (xdg-user-dirs): Update to 0.17.
* gnu: r-scatterplot3d: Update to 0.3-41.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/cran.scm (r-scatterplot3d): Update to 0.3-41.
* gnu: acpica: Update to 20180313.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/admin.scm (acpica): Update to 20180313.
* gnu: octave: Update to 4.2.2.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/maths.scm (octave): Update to 4.2.2.
* gnu: cifs-utils: Update to 6.8.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/samba.scm (cifs-utils): Update to 6.8.
* gnu: autoconf-archive: Update to 2018.03.13.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/autotools.scm (autoconf-archive): Update to 2018.03.13.
* gnu: perl-string-toidentifier-en: Update to 0.12.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/language.scm (perl-string-toidentifier-en): Update to 0.12.
* gnu: perl-lingua-en-inflect-phrase: Update to 0.20.Tobias Geerinckx-Rice2018-03-15
| | | | * gnu/packages/language.scm (perl-lingua-en-inflect-phrase): Update to 0.20.
* gnu: bind: Use INVOKE.Tobias Geerinckx-Rice2018-03-15
| | | | | * gnu/packages/dns.scm (isc-bind)[arguments]: Substitute INVOKE for SYSTEM* and end phase with an explicit #t.
* gnu: shadow: Fix CVE-2018-7169.Leo Famulari2018-03-15
| | | | | | * gnu/packages/patches/shadow-CVE-2018-7169.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/admin.scm (shadow)[source]: Use it.
* gnu: certbot: Update to 0.22.0.Leo Famulari2018-03-15
| | | | * gnu/packages/tls.scm (certbot, python-acme): Update to 0.22.0.
* gnu: Add python-feather-format.Leo Famulari2018-03-15
| | | | | * gnu/packages/serialization.scm (python-feather-format, python2-feather-format): New variables.
* gnu: Add python-pyarrow.Leo Famulari2018-03-15
| | | | * gnu/packages/databases.scm (python-pyarrow, python2-pyarrow): New variables.
* gnu: Add apache-arrow.Leo Famulari2018-03-15
| | | | * gnu/packages/databases.scm (apache-arrow): New variable.
* gnu: Add google-brotli.Leo Famulari2018-03-15
| | | | * gnu/packages/compression.scm (google-brotli): New variable.
* gnu: Add r-feather.Leo Famulari2018-03-15
| | | | * gnu/packages/serialization.scm (r-feather): New variable.
* gnu: Add r-ggmap.Leo Famulari2018-03-15
| | | | * gnu/packages/geo.scm (r-ggmap): New variable.
* gnu: Add r-jpeg.Leo Famulari2018-03-15
| | | | * gnu/packages/image.scm (r-jpeg): New variable.
* gnu: Add Diversitree.Leo Famulari2018-03-15
| | | | * gnu/packages/bioinformatics.scm (r-diversitree): New variable.
* gnu: Add r-desolve.Leo Famulari2018-03-15
| | | | * gnu/packages/maths.scm (r-desolve): New variable.
* gnu: Add r-subplex.Leo Famulari2018-03-15
| | | | gnu/packages/maths.scm (r-subplex): New variable.
* gnu: Add r-geosphere.Leo Famulari2018-03-15
| | | | * gnu/packages/geo.scm (r-geosphere): New variable.
* gnu: Add Rgooglemaps.Leo Famulari2018-03-15
| | | | * gnu/packages/geo.scm (r-rgooglemaps): New variable.
* gnu: Add r-mapproj.Leo Famulari2018-03-15
| | | | * gnu/packages/geo.scm (r-mapproj): New variable.
* gnu: Add r-maps.Leo Famulari2018-03-15
| | | | * gnu/packages/geo.scm (r-maps): New variable.
* gnu: Add python-plotly.Leo Famulari2018-03-15
| | | | * gnu/packages/graph.scm (python-plotly, python2-plotly): New variables.
* gnu: Add flatbuffers.Leo Famulari2018-03-15
| | | | * gnu/packages/serialization.scm (flatbuffers): New variable.
* services: Add 'virtual-terminal'.Ludovic Courtès2018-03-15
| | | | | | | | | | | | | Fixes <https://bugs.gnu.org/30505>. Suggested by Danny Milosavljevic <dannym@scratchpost.org>. * gnu/services/base.scm (unicode-start): Remove. (virtual-terminal-service-type): New variable. (console-font-shepherd-services): Remove 'modules'; remove call to 'unicode-start'. Add 'virtual-terminal' to 'requirement'. (mingetty-shepherd-service, kmscon-service-type): Likewise. (%base-services): Add 'virtual-terminal-service-type'. * gnu/system/install.scm (%installation-services): Likewise.
* services: 'shepherd-service-type' now accepts a default value.Ludovic Courtès2018-03-15
| | | | | * gnu/services/shepherd.scm (shepherd-service-type): Add a second form with an additional 'default' parameter.
* guix system: Add '--skip-checks'.Ludovic Courtès2018-03-15
| | | | | | | | | | | Fixes <https://bugs.gnu.org/30760>. Reported by Tomáš Čech <sleep_walker@gnu.org>. * guix/scripts/system.scm (perform-action): Add #:skip-safety-checks? and honor it. (show-help, %options): Add --skip-checks. (process-action): Pass #:skip-safety-checks? to 'perform-action'. * doc/guix.texi (Invoking guix system): Document --skip-checks.
* tests: Do not assume the bootstrap guile tarball is available locally.Ludovic Courtès2018-03-15
| | | | | | | | | Fixes <https://bugs.gnu.org/30824>. Reported by Chris Marusich <cmmarusich@gmail.com>. * tests/packages.scm ("package-source-derivation, snippet"): Use 'bootstrap-guile-origin' instead of assuming the bootstrap guile tarball is available locally.
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