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* build: emacs-build-system: Make the install phase more helpful.Christopher Baines2017-09-01
| | | | | | | | | | | | | Modify the install phase to detect when nothing has been installed, and error if this happens. This is preferable to continuing, and allowing the next phase to fail. Also, when nothing can be found to be installed, print out each file that was considered, along with the regular expressions that were used to include and exclude it. * gnu/build/emacs-build-system.scm (install-file?): Add additional error checking and logging.
* gnu: r-minimal: Update to 3.4.1.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-minimal): Update to 3.4.1.
* gnu: vdirsyncer: Update to 0.16.2.Leo Famulari2017-09-01
| | | | * gnu/packages/dav.scm (vdirsyncer): Update to 0.16.2.
* gnu: python-click-log: Update to 0.2.0.Leo Famulari2017-09-01
| | | | * gnu/packages/python.scm (python-click-log): Update to 0.2.0.
* gnu: python-click-threading: Update to 0.4.3.Leo Famulari2017-09-01
| | | | | * gnu/packages/python.scm (python-click-threading): Update to 0.4.3. [source]: Use pypi-uri.
* gnu: python-icalendar: Update to 3.11.7.Leo Famulari2017-09-01
| | | | * gnu/packages/python.scm (python-icalendar): Update to 3.11.7.
* gnu: r-genomicalignments: Update to 1.12.2.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2.
* gnu: r-tidyr: Update to 0.7.0.Ricardo Wurmus2017-09-01
| | | | | | * gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0. [propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and r-tidyselect.
* gnu: Add r-tidyselect.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-tidyselect): New variable.
* gnu: r-vegan: Update to 2.4-4.Ricardo Wurmus2017-09-01
| | | | | * gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4. [native-inputs]: Remove r-knitr.
* gnu: r-maldiquant: Update to 1.16.4.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4.
* gnu: r-bookdown: Update to 0.5.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5.
* gnu: r-ksamples: Update to 1.2-7.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-ksamples): Update to 1.2-7.
* gnu: r-distillery: Update to 1.0-4.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-distillery): Update to 1.0-4.
* gnu: r-sp: Update to 1.2-5.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-sp): Update to 1.2-5.
* gnu: r-ggally: Update to 1.3.2.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-ggally): Update to 1.3.2.
* gnu: r-reshape: Update to 0.8.7.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-reshape): Update to 0.8.7.
* gnu: r-powerlaw: Update to 0.70.1.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1.
* gnu: r-circlize: Update to 0.4.1.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-circlize): Update to 0.4.1.
* gnu: r-shape: Update to 1.4.3.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/cran.scm (r-shape): Update to 1.4.3.
* gnu: r-tclust: Update to 1.3-1.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-tclust): Update to 1.3-1.
* gnu: r-fastcluster: Update to 1.1.24.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24.
* gnu: r-rcpparmadillo: Update to 0.7.960.1.2.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2.
* gnu: r-plotrix: Update to 3.6-6.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6.
* gnu: r-httr: Update to 1.3.1.Ricardo Wurmus2017-09-01
| | | | | * gnu/packages/statistics.scm (r-httr): Update to 1.3.1. [propagated-inputs]: Remove r-digest and r-stringr.
* gnu: r-commonmark: Update to 1.4.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-commonmark): Update to 1.4.
* gnu: r-ade4: Update to 1.7-8.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-ade4): Update to 1.7-8.
* gnu: r-tibble: Update to 1.3.4.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 1.3.4.
* gnu: r-rlang: Update to 0.1.2.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.1.2.
* gnu: r-knitr: Update to 1.17.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-knitr): Update to 1.17.
* gnu: r-bh: Update to 1.65.0-1.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1.
* gnu: r-scales: Update to 0.5.0.Ricardo Wurmus2017-09-01
| | | | | * gnu/packages/statistics.scm (r-scales): Update to 0.5.0. [propagated-inputs]: Add r-r6 and r-viridislite.
* gnu: r-mgcv: Update to 1.8-19.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19.
* gnu: r-matrix: Update to 1.2-11.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/statistics.scm (r-matrix): Update to 1.2-11.
* gnu: r-servr: Update to 0.7.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/web.scm (r-servr): Update to 0.7.
* gnu: php: Update to 7.1.9.Julien Lepiller2017-09-01
| | | | * gnu/packages/php.scm (php): Update to 7.1.9.
* gnu: java-slf4j-api: Fix tests.Julien Lepiller2017-09-01
| | | | | * gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests Adjust the jar content to prevent a test failure.
* gnu: djvulibre: Remove timestamps from .svgz files.Z. Ren2017-09-01
| | | | | | * gnu/packages/djvu.scm (djvulibre)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-tuareg.Oleg Pykhalov2017-09-01
| | | | | | * gnu/packages/ocaml.scm (emacs-tuareg): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: emacs-ebuild-mode: Update to 1.37.ng02017-09-01
| | | | | | * gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-2048-game.ng02017-09-01
| | | | | | * gnu/packages/emacs.scm (emacs-2048-game): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* packages: 'fold-packages' takes an optional 'modules' parameter.Ludovic Courtès2017-09-01
| | | | | | | Suggested by Christopher Baines <mail@cbaines.net>. * gnu/packages.scm (fold-packages): Add optional 'modules' parameter and honor it.
* scripts: Remove 'max-silent-time' from the default options.Maxim Cournoyer2017-09-01
| | | | | | | | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/27157>. Having a finite default `max-silent-time' value for scripts such as 'guix environment' could lead to timeouts when building subtitutes; this was undesirable. This change also fixes client behavior to match the documentation, which is that by default the daemon's settings are honored. * guix/scripts/archive.scm (%default-options): Remove max-silent-time entry. * guix/scripts/copy.scm (%default-options): Likewise. * guix/scripts/environment.scm (%default-options): Likewise. * guix/scripts/pack.scm (%default-options): Likewise. * guix/scripts/package.scm (%default-options): Likewise. * guix/scripts/pull.scm (%default-options): Likewise. * guix/scripts/system.scm (%default-options): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: r-rcas: Correct license.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license.
* gnu: r-rcas: Update to 1.3.3.Ricardo Wurmus2017-09-01
| | | | * gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3.
* gnu: mysql: Enable tests on aarch64.Efraim Flashner2017-09-01
| | | | | * gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling the tests on aarch64-linux.
* gnu: vsearch: Update to 2.4.4.Ben Woodcroft2017-09-01
| | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4.
* gnu: metabat: Update to 2.12.1.Ben Woodcroft2017-09-01
| | | | | | | * gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1. [source]: Remove it. Use url-fetch.
* gnu: netcdf: Fix reproducibility issue; remove unneeded references.Thomas Danckaert2017-09-01
| | | | | * gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded 'Configured On' date; truncate reference to compiler store item.
* gnu: hdf4: Avoid unneeded store references to compilers.Thomas Danckaert2017-09-01
| | | | | * gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to truncate hashes of compiler store items.
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