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* gnu: rcas-web: Update to 0.0.4.Ricardo Wurmus2017-10-11
| | | | * gnu/packages/bioinformatics.scm (rcas-web): Update to 0.0.4.
* zlib: Fix memory leak due to revealed ports not being GC'd.Ludovic Courtès2017-10-11
| | | | | | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/28784>. This mostly reverts 81a0f1cdf12e7bcc34c1203f034a323fa8f52cf5, which introduced a regression: revealed ports are *never* GC'd (contrary to what Guile's manual suggests). In addition to the revert, 'close-procedure' now explicitly swallows EBADF errors when 'close-port' is called. * guix/zlib.scm (close-procedure): New procedure. (make-gzip-input-port)[gzfile]: Use 'fileno' instead of 'port->fdes'. Use 'close-procedure' instead of 'gzclose'. (make-gzip-output-port): Likewise. * tests/zlib.scm ("compression/decompression pipe"): Use 'port-closed?' to determine whether PARENT has been closed.
* gnu: mpg123: Update to 1.25.7.Leo Famulari2017-10-11
| | | | * gnu/packages/mp3.scm (mpg123): Update to 1.25.7.
* doc: Give an example with a FAT UUID.Ludovic Courtès2017-10-11
| | | | | | * gnu/system/examples/lightweight-desktop.tmpl <file-systems>: Add a UUID for the /boot/efi partition. * doc/guix.texi (Using the Configuration System): Mention it.
* uuid: Change "fat32" to "fat".Ludovic Courtès2017-10-11
| | | | | | | | | | | | * gnu/system/uuid.scm (%fat32-endianness): Rename to... (%fat-endianness): ... this. (fat32-uuid->string): Rename to... (fat-uuid->string): ... this. (%fat32-uuid-rx): Rename to.. (%fat-uuid-rx): ... this. (string->fat32-uuid): Rename to... (string->fat-uuid): ... this. (%uuid-parsers, %uuid-printers): Add 'fat16.
* file-systems: Add support for FAT16.Ludovic Courtès2017-10-11
| | | | | | | | | * gnu/build/file-systems.scm (check-fat32-file-system): Rename to... (check-fat-file-system): ... this. (check-file-system): Adjust accordingly. (fat16-superblock?, read-fat16-superblock) (fat16-superblock-uuid, fat16-superblock-volume-name): New procedures. (%partition-label-readers, %partition-uuid-readers): Add FAT16.
* file-systems: Preserve UUID types when serializing.Ludovic Courtès2017-10-11
| | | | | | | | | | | Reported by Roel Janssen <roel@gnu.org> at <https://lists.gnu.org/archive/html/help-guix/2017-09/msg00094.html>. * gnu/system/file-systems.scm (file-system->spec): When DEVICE is a UUID, serialize it in a way that preserves its type. (spec->file-system): Adjust accordingly. * gnu/build/file-systems.scm (canonicalize-device-spec): Add case for when SPEC is 'uuid?'.
* file-systems: 'mount-file-system' now takes a <file-system> object.Ludovic Courtès2017-10-11
| | | | | | | | | | | | | * gnu/build/file-systems.scm (mount-file-system): Rename 'spec' to 'fs' and assume it's a <file-system>. * gnu/build/linux-boot.scm (boot-system): Assume MOUNTS is a list of <file-system> and adjust accordingly. * gnu/build/linux-container.scm (mount-file-systems): Remove 'file-system->spec' call. * gnu/services/base.scm (file-system-shepherd-service): Add 'spec->file-system' call. Add (gnu system file-systems) to 'modules'. * gnu/system/linux-initrd.scm (raw-initrd): Use (gnu system file-systems). Add 'spec->file-system' call for #:mounts.
* gnu: Add freehdl.Theodoros Foradis2017-10-11
| | | | | | * gnu/packages/engineering.scm (freehdl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add xyce-parallel.Theodoros Foradis2017-10-11
| | | | | | | * gnu/packages/engineering.scm (trilinos-parallel-xyce) (xyce-parallel): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add xyce-serial.Theodoros Foradis2017-10-11
| | | | | | | * gnu/packages/engineering.scm (trilinos-serial-xyce) (xyce-serial): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add lapack-3.5.Theodoros Foradis2017-10-11
| | | | | | * gnu/packages/maths.scm (lapack-3.5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-rpy2: Ignore test results.Ricardo Wurmus2017-10-11
| | | | * gnu/packages/python.scm (python-rpy2)[arguments]: Ignore test failures.
* gnu: Add r-ggdendro.Roel Janssen2017-10-11
| | | | * gnu/packages/statistics.scm (r-ggdendro): New variable.
* gnu: linux-libre@4.9: Update to 4.9.54.Mark H Weaver2017-10-11
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.54.
* gnu: linux-libre@4.4: Update to 4.4.91.Mark H Weaver2017-10-11
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.91.
* build: Set 'NIX_BUILD_HOOK' only if offloading is configured.Eric Bavier2017-10-10
| | | | | | | | This prevents libstore/build.cc from executing nix/scripts/offload, which is always created by config.status, when offload support is not enabled. * build-aux/pre-inst-env.in: Export 'NIX_BUILD_HOOK' only when configured; unset it otherwise.
* gnu: dovecot: Update to 2.2.33.Tobias Geerinckx-Rice2017-10-10
| | | | * gnu/packages/mail.scm (dovecot): Update to 2.2.33.
* gnu: games: Remove unneeded import.Ludovic Courtès2017-10-10
| | | | | | | | Fixes a regression introduced in 42abb842f64f5dd7834cabd445a5f4d01f1e68a4. * gnu/packages/games.scm: Remove unneeded (guix build utils) import, which led to a name clash on 'which'.
* import: cpan: Load (gnu packages perl) lazily.Ludovic Courtès2017-10-10
| | | | | | * guix/import/cpan.scm: Remove dependency on (gnu packages perl). (perl-package): New procedure. (%corelist, core-module?): Use it instead of referring to 'perl'.
* import: pypi: Remove unneeded import.Ludovic Courtès2017-10-10
| | | | * guix/import/pypi.scm: Remove unneeded import.
* ui: Improve reporting of missing closing parentheses.Ludovic Courtès2017-10-10
| | | | | | | | Suggested by Ricardo Wurmus. Works around <https://bugs.gnu.org/28295>. * guix/ui.scm (report-load-error): Add case for 'read-error'. * tests/guix-system.sh: Test missing-closing-paren errors.
* gnu: alot: Update to 0.5.1.Troy Sankey2017-10-10
| | | | | | | | * gnu/packages/mail.scm (alot): Update to 0.5.1. [arguments]: Enable tests. [native-inputs]: Add python2-mock. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: python-twisted: Update to 17.1.0.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-twisted): Update to 17.1.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-incremental.Troy Sankey2017-10-10
| | | | | | | * gnu/packages/python.scm (python-incremental, python2-incremental): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-automat.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-automat, python2-automat): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-graphviz.Ricardo Wurmus2017-10-10
| | | | | * gnu/packages/graphviz.scm (python-graphviz, python2-graphviz): New variables.
* gnu: Add python-m2r.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-m2r, python2-m2r): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-constantly.Troy Sankey2017-10-10
| | | | | | | * gnu/packages/python.scm (python-constantly, python2-constantly): New variables. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: Add python-attrs.Troy Sankey2017-10-10
| | | | | | * gnu/packages/python.scm (python-attrs, python2-attrs): New variables. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* services: vpn: Fix default tls-auth configuration.Julien Lepiller2017-10-10
| | | | | * gnu/services/vpn.scm (serialize-tls-auth): Fix serialization error when tls-auth is disabled.
* gnu: Add java-fasterxml-jackson-dataformat-xml.Julien Lepiller2017-10-10
| | | | | * gnu/packages/java.scm (java-fasterxml-jackson-dataformat-xml): New variable.
* gnu: Add java-woodstox-core.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-woodstox-core): New variable.
* gnu: Add java-stax2-api.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-stax2-api): New variable.
* gnu: Add java-fasterxml-jackson-dataformat-yaml.Julien Lepiller2017-10-10
| | | | | * gnu/packages/java.scm (java-fasterxml-jackson-dataformat-yaml): New variable.
* gnu: Add java-snakeyaml.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-snakeyaml): New variable.
* gnu: Add java-fasterxml-jackson-modules-base-jaxb.Julien Lepiller2017-10-10
| | | | | * gnu/packages/java.scm (java-fasterxml-jackson-modules-base-jaxb): New variable.
* gnu: Add java-fasterxml-jackson-databind.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-fasterxml-jackson-databind): New variable.
* gnu: Add java-fasterxml-jackson-core.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-fasterxml-jackson-core): New variable.
* gnu: Add java-fasterxml-jackson-annotations.Julien Lepiller2017-10-10
| | | | | * gnu/packages/java.scm (java-fasterxml-jackson-annotations): New variable.
* gnu: Add java-ops4j-pax-exam-core-junit.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-ops4j-pax-exam-core-junit): New variable.
* gnu: Add java-ops4j-pax-exam-core-spi.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-ops4j-pax-exam-core-spi): New variable.
* gnu: Add java-ops4j-pax-exam-core.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-ops4j-pax-exam-core): New variable.
* gnu: Add java-ops4j-pax-tinybundles.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-ops4j-pax-tinybundles): New variable.
* gnu: Add java-aqute-bndlib.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-aqute-bndlib): New variable.
* gnu: Add java-aqute-libg.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-aqute-libg): New variable.
* gnu: Add java-aqute-bnd-annotation.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-aqute-bnd-annotation): New variable.
* gnu: Add java-ops4j-base-spi.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-ops4j-base-spi): New variable.
* gnu: Add java-ops4j-base-store.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-ops4j-base-store): New variable.
* gnu: Add java-ops4j-base-util-property.Julien Lepiller2017-10-10
| | | | * gnu/packages/java.scm (java-ops4j-base-util-property): New variable.
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