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* gnu: Add r-gseabase.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/bioinformatics.scm (r-gseabase): New variable.
* gnu: Add r-rbgl.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/bioinformatics.scm (r-rbgl): New variable.
* gnu: Add r-annotationforge.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/bioinformatics.scm (r-annotationforge): New variable.
* gnu: Add r-batchjobs.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-batchjobs): New variable.
* gnu: Add r-fail.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-fail): New variable.
* gnu: Add r-bbmisc.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-bbmisc): New variable.
* gnu: Add r-checkmate.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-checkmate): New variable.
* gnu: Add r-backports.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-backports): New variable.
* gnu: Add r-sendmailr.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-sendmailr): New variable.
* gnu: Add r-pheatmap.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-pheatmap): New variable.
* gnu: Add r-matrix.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-matrix): New variable.
* gnu: Add r-deseq2.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/bioinformatics.scm (r-deseq2): New variable.
* gnu: Add r-genefilter.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/bioinformatics.scm (r-genefilter): New variable.
* gnu: Add r-hmisc.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-hmisc): New variable.
* gnu: Add r-geneplotter.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/bioinformatics.scm (r-geneplotter): New variable.
* gnu: Add r-annotate.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/bioinformatics.scm (r-annotate): New variable.
* gnu: Add r-rpart.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/statistics.scm (r-rpart): New variable.
* gnu: Add r-rjson.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/web.scm (r-rjson): New variable.
* gnu: Add r-hwriter.Ricardo Wurmus2016-09-26
| | | | * gnu/packages/web.scm (r-hwriter): New variable.
* gnu: tcc: Disable build on MIPS.Ricardo Wurmus2016-09-26
| | | | | * gnu/packages/c.scm (tcc)[supported-systems]: Disable build on mips64el.
* gnu: Add optipng.Arun Isaac2016-09-25
| | | | | | * gnu/packages/image.scm (optipng): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* system: Don't emit a GRUB 'search' command when passed a GRUB file name.Ludovic Courtès2016-09-26
| | | | | | | | Reported by Tomáš Čech <tcech@suse.com> at <http://debbugs.gnu.org/cgi/bugreport.cgi?bug=20067#26>. * gnu/system/grub.scm (grub-root-search): Don't emit anything when FILE is a string that does not denote an absolute file name.
* gnu: epiphany: Drop NSS and libwnck.Ricardo Wurmus2016-09-25
| | | | | | These dependencies were dropped in Epiphany 3.21.x. * gnu/packages/gnome.scm (epiphany)[inputs]: Remove "nss" and "libwnck".
* gnu: epiphany: Update to 3.22.0.Ricardo Wurmus2016-09-25
| | | | * gnu/packages/gnome.scm (epiphany): Update to 3.22.0.
* gnu: python-virtualenv: Update to 15.0.3.Ricardo Wurmus2016-09-25
| | | | | * gnu/packages/python.scm (python-virtualenv): Update to 15.0.3. [arguments]: Disable failing test.
* gnu: linux-libre: Update to 4.7.5.Mark H Weaver2016-09-25
| | | | * gnu/packages/linux.scm (linux-libre): Update to 4.7.5.
* gnu: linux-libre@4.4: Update to 4.4.22.Mark H Weaver2016-09-25
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.22.
* gnu: Add pam-krb5John Darrington2016-09-25
| | | | * gnu/packages/admin.scm (pam-krb5): New variable.
* gnu: privoxy: Update to 3.0.26.Efraim Flashner2016-09-24
| | | | | * gnu/packages/tor.scm (privoxy): Update to 3.0.26. [home-page]: Use https.
* gnu: tor: Update to 0.2.8.8.Efraim Flashner2016-09-24
| | | | | | * gnu/packages/tor.scm (tor): Update to 0.2.8.8. [source]: Update source url. [home-page]: Use https.
* system: grub.cfg uses correct file names when store is not in root partition.Carlos Sánchez de La Lama2016-09-24
| | | | | | | | | | | | | | | Fixes <http://bugs.gnu.org/24346>. Reported by csanchezdll@gmail.com (Carlos Sánchez de La Lama). * guix/scripts/system.scm (previous-grub-entries): Get the initrd file name from PARAMS. * gnu/system.scm (operating-system-grub.cfg): Use 'operating-system-initrd-file' to retrieve the initrd file name. * gnu/system/grub.scm (strip-mount-point): New procedure. (grub-configuration-file)[entry->gexp]: Call 'strip-mount-point' for LINUX and INITRD. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* system: 'read-boot-parameters' reads the 'initrd' parameter.Ludovic Courtès2016-09-24
| | | | | | * gnu/system.scm (<boot-parameters>)[initrd]: New field. (read-boot-parameters): Read the 'initrd' element and fill in the 'initrd' field of the result.
* gnu: Add gforth.ng02016-09-24
| | | | | | | * gnu/packages/gforth.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Co-authored-by: 宋文武 <iyzsong@gmail.com>
* gnu: Add gnome-calculator.Rene Saavedra2016-09-24
| | | | | | * gnu/packages/gnome.scm (gnome-calculator): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: Add cmark.Erik Edrosa2016-09-23
| | | | | | * gnu/packages/markdown.scm (cmark): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add enet.ng02016-09-23
| | | | | | * gnu/packages/networking.scm (enet): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: flashrom: Update to 0.9.9Danny Milosavljevic2016-09-23
| | | | | | | | | | * gnu/packages/flashing-tools.scm (flashrom): Update to 0.9.9. [source]: Use HTTPS URL. Remove "flashrom-use-libftdi1.patch". [aruments]: Add 'CONFIG_ENABLE_LIBUSB0_PROGRAMMERS=no' to #:make-flags. * gnu/packages/patches/flashrom-use-libftdi1.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: Add nickle.ng02016-09-23
| | | | | | | * gnu/packages/nickle.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: orpheus: Use 'modify-phases'.Efraim Flashner2016-09-23
| | | | | * gnu/packages/orpheus.scm (orpheus)[arguments]: Use the 'modify-phases' syntax.
* gnu: orpheus: Fix build on mips64el.Efraim Flashner2016-09-23
| | | | | * gnu/packages/orpheus.scm (orpheus)[arguments]: On mips64el, pass "--host=mips64el-unknown-linux-gnu" to ./configure.
* gnu: giac-xcas: Update to 1.2.2-81.Nicolas Goaziou2016-09-23
| | | | | | * gnu/packages/algebra.scm (giac-xcas): Update to 1.2.2-81. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: r-curl: Respect CURL_CA_BUNDLE variable.Ricardo Wurmus2016-09-23
| | | | | * gnu/packages/web.scm (r-curl)[arguments]: Add phase "allow-CURL_CA_BUNDLE".
* gnu: sra-tools: Update to 2.7.0.Ricardo Wurmus2016-09-23
| | | | * gnu/packages/bioinformatics.scm (sra-tools): Update to 2.7.0.
* gnu: ncbi-vdb: Update to 2.7.0.Ricardo Wurmus2016-09-23
| | | | * gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.7.0.
* gnu: ngs-sdk: Update to 1.2.5.Ricardo Wurmus2016-09-23
| | | | * gnu/packages/bioinformatics.scm (ngs-sdk): Update to 1.2.5.
* gnu: randomjungle: Only build on x86_64 and i686.Ricardo Wurmus2016-09-23
| | | | | * gnu/packages/machine-learning.scm (randomjungle)[supported-systems]: Only build on x86_64 and i686.
* gnu: retroarch: Update to 1.3.6.Efraim Flashner2016-09-23
| | | | * gnu/packages/games.scm (retroarch): Update to 1.3.6.
* gnu: synfig: Fix isnan error.Ricardo Wurmus2016-09-23
| | | | | * gnu/packages/animation.scm (synfig)[arguments]: Add build phase to replace "::isnan" with "std::isnan".
* gnu: ccache: Upgrade to 3.3.1.Eric Bavier2016-09-22
| | | | | * gnu/packages/ccache.scm (ccache): Upgrade to 3.3.1. [description]: Adjust supported languages.
* gnu: ccache: Use modify-phases.Eric Bavier2016-09-22
| | | | * gnu/packages/ccache.scm (ccache)[arguments]: Use modify-phases.
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