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| | * | gnu: ams-lv2: Always return #t from phase remove-sse-flags.Björn Höfling2018-11-26
| | | | | | | | | | | | | | | | | | | | * gnu/packages/music.scm (ams-lv2)[arguments]: Use '(unless' instead of '(when (not'. Return with #t as last value from phase 'remove-sse-flags'.
| | * | gnu: ams-lv2: Fix error in configure phase.Björn Höfling2018-11-26
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Python 3.7 introduced PEP 479. That raised an error in an old waf-script included in the package. An updated waf-script was found in a newer commit that fixes the problem. * gnu/packages/music.scm (ams-lv2)[sources]: Update, using two more commits than version 1.2.1.
| | * | gnu: aegisub: Fix build.Björn Höfling2018-11-25
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/aegisub-boost68.patch: New file * gnu/local.mk: Add it. * gnu/packages/video.scm (aegisub)[source]: Use patch.
| | * | gnu: randomjungle: Do not build static binaries.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/randomjungle-disable-static-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/machine-learning.scm (randomjungle)[source](patches): Add it. [arguments]: Add "--disable-static" to #:configure-flags.
| | * | gnu: python2-gevent: Fix compilation.Ludovic Courtès2018-11-25
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-gevent)[arguments]: Add (ice-9 match) to #:modules. In 'do-not-use-bundled-sources' phase, use 'scandir' to avoid hard-coded include directory name. [properties]: New field. (python2-gevent): Add 'native-inputs' and 'arguments' fields.
| | * | gnu: libreoffice: Fix build with MDDS 1.4 and Orcus 0.14.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/libreoffice.scm (libreoffice)[source](patches): Add two patches from Arch Linux. [arguments]: Add substitutions so the libraries are found.
| | * | gnu: libetonyek: Fix build against mdds 1.4.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | | | | | * gnu/packages/libreoffice.scm (libetonyek)[arguments]: Add phase to substitute mdds version. Adjust #:configure-flags accordingly.
| | * | gnu: orcus: Update to 0.14.1.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | * gnu/packages/libreoffice.scm (orcus): Update to 0.14.1.
| | * | gnu: ixion: Update to 0.14.1.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | * gnu/packages/libreoffice.scm (ixion): Update to 0.14.1.
| | * | gnu: mdds: Update to 1.4.3.Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | * gnu/packages/boost.scm (mdds): Update to 1.4.3.
| | * | gnu: python2-numpy@1.8: Provide "python2-nose".Marius Bakke2018-11-25
| | | | | | | | | | | | | | | | | | | | | | | | Also remove other native-inputs since they appear unnecessary. * gnu/packages/python.scm (python2-numpy-1.8)[native-inputs]: New field.
| | * | gnu: diffoscope: Update to 106.Julien Lepiller2018-11-25
| | | | | | | | | | | | | | | | * gnu/packages/package-management.scm (diffoscope): Update to 106.
| | * | gnu: diffoscope: Fix test failure.Julien Lepiller2018-11-25
| | | | | | | | | | | | | | | | | | | | * gnu/packages/package-management.scm (diffoscope)[arguments]: Remove failing Berkeley DB test.
| | * | Merge branch 'master' into core-updatesMarius Bakke2018-11-24
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| | * | | gnu: python-pika: Update to 0.12.0.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-pika): Update to 0.12.0.
| | * | | gnu: bless: Adjust to zlib static output.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (bless)[inputs]: Add ZLIB:STATIC. [arguments]: Adjust #:make-flags accordingly.
| | * | | gnu: adb: Fix FTBFS with Glibc 2.28.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/android.scm (adb)[arguments]: Add phase 'glibc-compat'.
| | * | | gnu: python2-fasteners: Propagate python2-futures.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-fasteners)[properties]: New field. (python2-fasteners)[propagated-inputs]: Add PYTHON2-FUTURES.
| | * | | gnu: python2-futures: Update to 3.2.0.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-futures): Update to 3.2.0.
| | * | | gnu: python2-futures: Disable tests.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-futures)[arguments]: Set #:test? #f.
| | * | | gnu: python-pycurl: Fix FTBFS from 7b844100464633db5455a3931858bb57c9e529e6.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python-web.scm (python-pycurl)[arguments]: Add phase 'configure-tls-backend'.
| | * | | gnu: ledger: Fix build with Boost >= 1.68.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/finance.scm (ledger)[arguments]: Add phase 'boost-compat.
| | * | | gnu: mosaik: Fix FTBFS from b90289dadc8ee15848ce911a2bdcd3ae8302d58c.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (mosaik)[inputs]: Add ZLIB:STATIC.
| | * | | gnu: python-cheetah: Update to 3.1.0.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python2-cheetah): Rename to ... (python-cheetah): ... this. Update to 3.1.0. [arguments]: Add custom 'check' phase. [propagated-inputs]: Change PYTHON2-MARKDOWN to PYTHON-MARKDOWN. (python2-cheetah): Rewrite in terms of PACKAGE-WITH-PYTHON2.
| | * | | gnu: python2-cheetah: Update home page.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-cheetah)[home-page]: Update to current.
| | * | | gnu: rust: Don't depend on 'git'.Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/rust.scm (rust-1.19)[inputs]: Remove GIT. (rust-1.20)[arguments]: Disable Cargo tests that require git. (rust-1.26)[arguments]: Likewise.
| | * | | gnu: mariadb: Update to 10.1.37 [security fixes].Marius Bakke2018-11-24
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156, and CVE-2018-3251. See <https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.37.
| | * | | Merge branch 'master' into core-updatesMarius Bakke2018-11-24
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| | * | | | gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase.Ludovic Courtès2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of 'system*'. Add 'mpi-setup' phase. (pt-scotch32)[arguments]: Likewise.
| | * | | | gnu: pigx-scrnaseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4 with snakemake.
| | * | | | gnu: pigx-bsseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4 with snakemake.
| | * | | | gnu: pigx-chipseq: Use latest snakemake.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4 with snakemake.
| | * | | | gnu: python-gevent: Update to 1.3.7.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-gevent): Update to 1.3.7. [arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources". [propagated-inputs]: Add python-objgraph.
| | * | | | gnu: Add python-objgraph.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-objgraph): New variable.
| | * | | | gnu: python-loompy: Remove python-typing.Ricardo Wurmus2018-11-23
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove python-typing.
| | * | | | gnu: podofo: Add patch to fix build.Ricardo Wurmus2018-11-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/podofo-cmake-3.12.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (podofo)[source]: Add patch.
| | * | | | gnu: jalv: Build with python-2.Efraim Flashner2018-11-22
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/audio.scm (jalv)[arguments]: Build with python-2.
| | * | | | gnu: python-scikit-learn: Update to 0.20.1.Marius Bakke2018-11-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1. [source](patches): Remove. [arguments]: Skip network tests with pytest instead of deleting files. Make sure $HOME is writable. (python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
| | * | | | Merge branch 'master' into core-updatesMarius Bakke2018-11-22
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| | * | | | | gnu: python-tblib: Fix test failure with Python 3.7.Marius Bakke2018-11-22
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-tblib)[arguments]: Add 'adjust-tests' phase.
| | * | | | | gnu: python-numpy: Update to 1.15.4.Marius Bakke2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-numpy): Update to 1.15.4.
| | * | | | | Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner2018-11-21
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| | * | | | | | gnu: libbytesize: Make .mo file builds reproducible.Ludovic Courtès2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New fields. [arguments]: Add #:configure-flags and #:phases.
| | * | | | | | gnu: emacs-pdf-tools: Fix build with recent Poppler.Ludovic Courtès2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file. * gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
| | * | | | | | gnu: emacs-pdf-tools: Use 'git-fetch'.Ludovic Courtès2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Switch to GIT-FETCH. [arguments]: In 'emacs-patch-variables' phase, make files writable.
| | * | | | | | gnu: casync: Fix build with glibc 2.28.Ludovic Courtès2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/patches/casync-renameat2-declaration.patch: New file. * gnu/packages/sync.scm (casync)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
| | * | | | | | gnu: ntk: Don't use bundled waf.Efraim Flashner2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/fltk.scm (ntk)[inputs]: Add python-waf. [arguments]: Add custom phase to replace vendored waf.
| | * | | | | | gnu: python-waf: Use a proper directory structure.Efraim Flashner2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/25634>. * gnu/packages/python.scm (python-waf): Replace custom 'install phase to install "waf" binary into the bin directory. Remove the 'wrap phase. * gnu/packages/video.scm (mpv)[arguments]: Adjust the 'setup-waf phase accordingly.
| | * | | | | | gnu: python-astroid: Update to 2.0.4.Efraim Flashner2018-11-21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/python.scm (python-astroid): Update to 2.0.4. [source]: Switch to pypi source. [native-inputs]: Add python-dateutil, python-nose, python-pytest, python-pytest-runner. [arguments]: Add phase to remove spurious test failure. Update custom 'check phase. (python2-astroid): Update to 1.6.5. [source]: Use pypi source. [arguments]: Add phase to remove spurious test failure.
| | * | | | | | Merge branch 'master' into core-updatesMarius Bakke2018-11-20
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