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* refresh: Report packages using the "@" syntax.Ludovic Courtès2017-05-01
| | | | | | * guix/scripts/refresh.scm (list-dependents)[full-name]: New procedure. Use 'full-name' instead of 'package-full-name'. * doc/guix.texi (Invoking guix refresh): Adjust example accordingly.
* gnu: vcftools: Update to 0.1.15.Roel Janssen2017-05-01
| | | | * gnu/packages/bioinformatics.scm (vcftools): Update to 0.1.15.
* gnu: services: nginx: Fix key verification.Julien Lepiller2017-05-01
| | | | * gnu/services/web.scm (default-nginx-server-config): Fix wrong variable name.
* gnu: services: Create logs directory.Julien Lepiller2017-05-01
| | | | | * gnu/services/web.scm (nginx-activation): Create logs directory so nginx can log its startup messages before it loads its configuration.
* gnu: services: nginx: Test certificate presence.Julien Lepiller2017-05-01
| | | | | * gnu/services/web.scm (default-nginx-server-config): Test certificate presence when https is requested at configure time.
* gnu: neomutt: Update to 20170428.ng02017-04-30
| | | | | | * gnu/packages/mail.scm (neomutt): Update to 20170428. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: emacs-mu4e-alert: Update to 1.0.Mathieu Othacehe2017-04-30
| | | | | | * gnu/packages/emacs.scm (emacs-mu4e-alert): Update to 1.0. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: Add gcc-vc4.Danny Milosavljevic2017-05-01
| | | | | | | Fixes <https://bugs.gnu.org/26541>. * gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add vc4-elf. * gnu/packages/embedded.scm (gcc-vc4): New variable.
* gnu: guile-git: Update to revision 2.Mathieu Othacehe2017-04-30
| | | | | | | | * gnu/packages/guile.scm (guile-git): Update to revision 2. [arguments]: remove "ccache -> site-ccache" substitution because it has been ported upstream. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
* gnu: python-llfuse: Update to 1.2.Leo Famulari2017-04-30
| | | | * gnu/packages/python.scm (python-llfuse, python2-llfuse): Update to 1.2.
* gnu: fuse: Update to 2.9.7.Leo Famulari2017-04-30
| | | | * gnu/packages/linux.scm (fuse): Update to 2.9.7.
* gnu: radicale: Update to 1.1.2 [fixes CVE-2017-8342].Leo Famulari2017-04-30
| | | | * gnu/packages/dav.scm (radicale): Update to 1.1.2.
* Revert "gnu: Move netsurf to web-browsers.scm."Leo Famulari2017-04-30
| | | | | | | | This change caused building Guix to fail with: 393: 1 [eval #<memoized glib-or-gtk-build-system> (# "3.6" "netsurf" . #)] This reverts commit a39ee1accb384fa4747a2a14d44616557419087f.
* gnu: Move netsurf to web-browsers.scm.Kei Kebreau2017-04-30
| | | | | * gnu/packages/web.scm: Move netsurf... * gnu/packages/web-browsers.scm: ...here.
* gnu: glibc/linux: Fix build of glibc-intermediate.Ricardo Wurmus2017-04-30
| | | | | | | | This is a follow-up to commit b2fd8f63679aa4f244c36fdca62f23c00b8eded9. * gnu/packages/base.scm (glibc/linux)[arguments]: Take patch from either native-inputs or just inputs; fix syntax error; report errors on patch failure.
* gnu: femtolisp: Remove aarch64-linux from supported-architectures.Efraim Flashner2017-04-30
| | | | | * gnu/packages/lisp.scm (femtolisp)[supported-systems]: Remove aarch64-linux from supported-systems.
* gnu: Add netcdf-fortran.Thomas Danckaert2017-04-30
| | | | * gnu/packages/maths.scm (netcdf-fortran): New variable.
* gnu: jemalloc: Disable transparent huge pages on non-Intel systems.Efraim Flashner2017-04-30
| | | | | | * gnu/packages/jemalloc.scm (jemalloc)[arguments]: On non-Intel systems add '--disable-thp' to #:configure-flags. Adjust #:phases to remove offending test which incorrectly tests transparent huge pages.
* python-sphinxcontrib-programoutput: Update to 0.10.Christopher Allan Webber2017-04-29
| | | | * gnu/packages/python.scm (python-sphinxcontrib-programoutput): Update to 0.10.
* gnu: xapian: Update to 1.4.4.Marius Bakke2017-04-29
| | | | * gnu/packages/search.scm (xapian): Update to 1.4.4.
* gnu: glibc/linux: Fix runtime crashes on i686 systems.Ricardo Wurmus2017-04-29
| | | | | | | | | | * gnu/packages/patches/glibc-memchr-overflow-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[native-inputs]: Add the patch conditionally for i686 systems. * gnu/packages/base.scm (glibc/linux)[native-inputs]: Add the patch conditionally for i686 systems. [arguments]: Apply the patch conditionally on i686 systems.
* gnu: lsof: Update to 4.89.Efraim Flashner2017-04-29
| | | | * gnu/packages/lsof.scm (lsof): Update to 4.89.
* gnu: lsof: Shorten 'install phase.Efraim Flashner2017-04-29
| | | | | * gnu/packages/lsof.scm (lsof)[arguments]: Use 'install-file during the 'install phase.
* gnu: lsof: Use 'modify-phases' syntax.Efraim Flashner2017-04-29
| | | | * gnu/packages/lsof.scm (lsof)[arguments]: Use 'modify-phases' syntax.
* gnu: lsof: Add to mirror list.Efraim Flashner2017-04-29
| | | | * gnu/packages/lsof.scm (lsof)[source]: Add to mirror list.
* gnu: r-genomeinfodbdata: Fix source url.Efraim Flashner2017-04-29
| | | | | * gnu/packages/bioinformatics.scm (r-genomeinfodbdata)[source]: Use source uri and not bioconductor-uri shortener.
* gnu: freetype: Fix CVE-2017-{8105,8287}.Leo Famulari2017-04-29
| | | | | | | | * gnu/packages/patches/freetype-CVE-2017-8105.patch, gnu/packages/patches/freetype-CVE-2017-8287.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/fontutils.scm (freetype)[replacement]: New field. (freetype/fixed): New variable.
* gnu: ocaml-qtest: Use ocaml-qcheck.Julien Lepiller2017-04-29
| | | | * gnu/packages/ocaml.scm (ocaml-qtest)[propagated-inputs]: Add ocaml-qcheck.
* gnu: Add ocaml-qcheck.Julien Lepiller2017-04-29
| | | | * gnu/packages/ocaml.scm (ocaml-qcheck): New variable.
* gnu: python-openid: Fix package.Danny Milosavljevic2017-04-29
| | | | | | | | Fixes <https://bugs.gnu.org/26692>. * gnu/packages/python.scm (python-openid)[arguments]: Replace 'check phase. [propagated-inputs]: Add python-defusedxml. [native-inputs]: Add python-psycopg2, python-django.
* gnu: ghostscript-with-cups: Avoid inheriting replacement field.Leo Famulari2017-04-29
| | | | | | This is a followup to commit a01f15759a00503101baa23af87cbd6095a1fbd6. * gnu/packages/cups.scm (ghostscript/cups)[replacement]: New field.
* gnu: radeontop: Update to 1.0.Tobias Geerinckx-Rice2017-04-29
| | | | | * gnu/packages/linux.scm (radeontop): Update to 1.0. [inputs]: Add libxcb.
* gnu: ghostscript: Fix CVE-2017-8291.Leo Famulari2017-04-28
| | | | | | | | * gnu/packages/patches/ghostscript-CVE-2017-8291.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field. (ghostscript/fixed): New variable. (ghostscript-with-x)[replacement]: New field.
* gnu: youtube-dl: Update to 2017.04.28.Arun Isaac2017-04-28
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2017.04.28.
* gnu: Add enigma.Ricardo Wurmus2017-04-28
| | | | * gnu/packages/games.scm (enigma): New variable.
* gnu: Add xerces-c.Ricardo Wurmus2017-04-28
| | | | * gnu/packages/xml.scm (xerces-c): New variable.
* gnu: schismtracker: Update to 20170420.Kei Kebreau2017-04-28
| | | | * gnu/packages/music.scm (schismtracker): Update to 20170420.
* gnu: awscli: Add python-pyyaml input.David Thompson2017-04-28
| | | | | | Without this input, 'aws ec2 import-key-pair' doesn't work. * gnu/packages/python.scm (awscli)[propagated-inputs]: Add python-pyyaml.
* gnu: virt-manager: Update to 1.4.1.宋文武2017-04-28
| | | | * gnu/packages/qemu.scm (virt-manager): Update to 1.4.1.
* gnu: python-libvirt: Update to 3.2.0.宋文武2017-04-28
| | | | * gnu/packages/qemu.scm (python-libvirt, python2-libvirt): Update to 3.2.0.
* gnu: libvirt-glib: Update to 1.0.0.宋文武2017-04-28
| | | | * gnu/packages/qemu.scm (libvirt-glib): Update to 1.0.0.
* gnu: libvirt: Update to 3.2.0.宋文武2017-04-28
| | | | * gnu/packages/qemu.scm (libvirt): Update to 3.2.0.
* gnu: r-preprocesscore: Update to 1.38.0.Roel Janssen2017-04-28
| | | | * gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0.
* gnu: r-msnid: Update to 1.10.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0.
* gnu: r-msnbase: Update to 2.2.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0.
* gnu: r-pcamethods: Update to 1.68.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0.
* gnu: r-mzid: Update to 1.14.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0.
* gnu: r-vsn: Update to 3.44.0.Roel Janssen2017-04-28
| | | | | | * gnu/packages/bioinformatics.scm (r-vsn): [source]: Update to 3.44.0, [propagated-inputs]: Add r-hexbin.
* gnu: r-affy: Update to 1.54.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0.
* gnu: r-affyio: Update to 1.46.0.Roel Janssen2017-04-28
| | | | * gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0.
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