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* Merge branch 'master' into stagingLeo Famulari2018-03-06
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| * gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}].Leo Famulari2018-03-06
| | | | | | | | * gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
| * gnu: syncthing: Update to 0.14.45.Leo Famulari2018-03-06
| | | | | | | | | | | | | | * gnu/packages/syncthing.scm (syncthing): Update to 0.14.45. [inputs]: Remove go-github-com-xtaci-kcp-go, go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add go-github-com-pkg-errors.
| * gnu: Remove go-github-com-templexxx-xor.Leo Famulari2018-03-06
| | | | | | | | * gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
| * gnu: Remove go-github-com-templexxx-cpufeat.Leo Famulari2018-03-06
| | | | | | | | | | * gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove variable.
| * gnu: Remove go-github-com-tjfoc-gmsm-sm4.Leo Famulari2018-03-06
| | | | | | | | * gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
| * gnu: Remove go-github-com-klauspost-reedsolomon.Leo Famulari2018-03-06
| | | | | | | | | | * gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove variable.
| * gnu: Remove go-github-com-klauspost-cpuid.Leo Famulari2018-03-06
| | | | | | | | * gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
| * gnu: Remove go-github-com-ccding-go-stun.Leo Famulari2018-03-06
| | | | | | | | * gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
| * gnu: Remove go-github-com-xtaci-kcp-go.Leo Famulari2018-03-06
| | | | | | | | * gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
| * gnu: Remove go-github-com-xtaci-smux.Leo Famulari2018-03-06
| | | | | | | | * gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
| * gnu: re2: Update to 2018-03-01.Marius Bakke2018-03-06
| | | | | | | | * gnu/packages/regex.scm (re2): Update to 2018-03-01.
| * gnu: feh: Update to 2.25.Marius Bakke2018-03-06
| | | | | | | | * gnu/packages/image-viewers.scm (feh): Update to 2.25.
| * gnu: iceauth: Update to 1.0.8.Marius Bakke2018-03-06
| | | | | | | | * gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
| * gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537].Marius Bakke2018-03-06
| | | | | | | | | | | | | | See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for more information about the vulnerabilities. * gnu/packages/django.scm (python-django): Update to 1.11.11.
| * gnu: samtools: Update to 1.7.Ricardo Wurmus2018-03-06
| | | | | | | | * gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
| * gnu: htslib: Update to 1.7.Ricardo Wurmus2018-03-06
| | | | | | | | | | * gnu/packages/bioinformatics.scm (htslib): Update to 1.7. [arguments]: Remove field.
| * gnu: r-rhdf5: Make build reproducible.Ricardo Wurmus2018-03-06
| | | | | | | | | | * gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and host system information from settings file.
| * gnu: r-lambda-r: Run unit tests.Ricardo Wurmus2018-03-06
| | | | | | | | | | * gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit. [arguments]: Add build phase to delete test logs.
| * gnu: r-gtools: Make output deterministic.Ricardo Wurmus2018-03-06
| | | | | | | | | | * gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid running tempdir at build time.
| * ui: 'load*' no longer fails on Guile 2.2.3 upon EACCES or similar.Ludovic Courtès2018-03-06
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Previously, if ~/.cache was not write-accessible, 'guix' would exit with code 1 without printing any message. That was because the 'make-stack' call would fail since the exception (a 'system-error) came from 'compile-file', which was called at a point where TAG wasn't installed yet. Secondly, to mimick auto-compilation behavior, we just swallow 'system-error raised by 'compile-file'. Reported by Clément Lassieur. * guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of TAG. Catch 'system-error around it and ignore it.
| * gnu: emacs-transmission: Update to 0.12.1.Oleg Pykhalov2018-03-06
| | | | | | | | * gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
| * gnu: haskell-mode: Fix find emacs-stream elisp directory.Oleg Pykhalov2018-03-06
| | | | | | | | | | * gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with "\\.el$" in ‘el-dir’.
| * gnu: ovmf: Fix build and add FIXME.Rutger Helling2018-03-06
| | | | | | | | | | * gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME about failing script.
| * gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.Gábor Boskovits2018-03-05
| | | | | | | | | | * gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>: Modify fix-version to use the distibution version of java-aqute-bndlib.
| * gnu: perl-email-address: Update to 1.909.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/perl.scm (perl-email-address): Update to 1.909.
| * gnu: perl-sub-quote: Update to 2.005000.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
| * gnu: perl-xml-compile-cache: Update to 1.06.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
| * gnu: perl-xml-rss: Update to 1.60.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
| * gnu: editres: Update to 1.0.7.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/xorg.scm (editres): Update to 1.0.7.
| * gnu: tocc, libtocc: Use HTTPS home page.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
| * gnu: perl-io-socket-ip: Update to 0.39.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
| * gnu: perl-www-mechanize: Update to 1.87.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
| * gnu: openvpn: Mark up description.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
| * gnu: openvpn: Update to 2.4.5.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
| * gnu: papi: Use HTTPS home page.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | * gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
| * gnu: papi: Fix documentation location.Tobias Geerinckx-Rice2018-03-05
| | | | | | | | | | * gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’ to a customary subdirectory of /share/doc.
| * gnu: xpra: Update to 2.2.5.Rutger Helling2018-03-05
| | | | | | | | * gnu/packages/xorg.scm (xpra): Update to 2.2.5.
| * ui: Better workaround for lack of '%fresh-auto-compile' on 2.2.3.Ludovic Courtès2018-03-05
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/29226> for the most part. * guix/ui.scm (load*): Add call to 'compile-file' on 2.2.3.
| * nls: Add Simplified Chinese translation.Ludovic Courtès2018-03-05
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| * build: Default to berlin.guixsd.org substitutes on aarch64.Ludovic Courtès2018-03-05
| | | | | | | | | | | | | | Suggested by Efraim Flashner <efraim@flashner.co.il>. * config-daemon.ac: Set 'guix_substitute_urls' to berlin.guixsd.org on aarch64.
| * build: Always use https substitute URLs.Ludovic Courtès2018-03-05
| | | | | | | | * config-daemon.ac: Remove GUILE_MODULE_AVAILABLE check for (gnutls).
| * doc: Adjust 'xset -fp' command to avoid symlinks.Ludovic Courtès2018-03-05
| | | | | | | | | | | | | | Fixes <https://bugs.gnu.org/30655>. Reported by Marco van Hulten <marco@hulten.org>. * doc/guix.texi (Application Setup): Adjust 'xset +fp' example.
| * gnu: linux-libre@4.14: Update to 4.14.24.Mark H Weaver2018-03-05
| | | | | | | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.24. (%linux-libre-4.14-hash): Update hash.
| * gnu: linux-libre@4.9: Update to 4.9.86.Mark H Weaver2018-03-05
| | | | | | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.86.
| * gnu: linux-libre@4.4: Update to 4.4.120.Mark H Weaver2018-03-05
| | | | | | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.120.
| * gnu: Add emacs-terraform-mode.Christopher Baines2018-03-05
| | | | | | | | * gnu/packages/emacs.scm (emacs-terraform-mode): New variable.
| * gnu: Add emacs-hcl-mode.Christopher Baines2018-03-05
| | | | | | | | * gnu/packages/emacs.scm (emacs-hcl-mode): New variable.
| * services: Add openntpd service.Efraim Flashner2018-03-05
| | | | | | | | | | | | | | | | | | | | * gnu/packages/ntp.scm (openntpd)[arguments]: Add 'configure-flags to set openntpd daemon's user and localstatedir. Add a custom phase to not try to create said directory at install time. * gnu/services/networking.scm (<openntpd-configuration>): New record type. (openntpd-shepherd-service, openntpd-service-activation): New procedures. (openntpd-service-type): New variable. * doc/guix.texi (Networking Services): Add openntpd documentation.
| * gnu: papi: Update phase style.Tobias Geerinckx-Rice2018-03-04
| | | | | | | | | | * gnu/packages/profiling.scm (papi)[arguments]: Substitute INVOKE for SYSTEM*, end phases with #t, and don't explicitly install LICENSE.txt.