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* gnu: Add r-mousegastrulationdata.•••* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2023-08-28
* gnu: Add r-bumpymatrix.•••* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2023-08-28
* gnu: Add r-msigdb.•••* gnu/packages/bioconductor.scm (r-msigdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2023-08-28
* gnu: Add r-earlywarnings.•••* gnu/packages/cran.scm (r-earlywarnings): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2023-08-28
* gnu: Add r-tgp.•••* gnu/packages/cran.scm (r-tgp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2023-08-28
* gnu: Add r-maptree.•••* gnu/packages/cran.scm (r-maptree): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2023-08-28
* gnu: Add python-scdamandtools.•••* gnu/packages/bioinformatics.scm (python-scdamandtools): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Navid Afkhami2023-08-28
* gnu: linux-libre 6.1: Update to 6.1.47.•••* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.47. (linux-libre-6.1-pristine-source): Update hash. Leo Famulari2023-07-23
* gnu: linux-libre: Update to 6.4.12.•••* gnu/packages/linux.scm (linux-libre-6.4-version): Update to 6.4.12. (linux-libre-6.4-pristine-source): Update hash. Leo Famulari2023-07-23
* Revert "gnu: system: Add home-directory-permissions field to <user-account>."•••This reverts commit e9a5eebc785cb843034b38c5c5a6dd10904bdf2a, which as far as I can tell breaks system roll-backs thusly: [...] In gnu/build/accounts.scm: 239:27 3 (_ #<<password-entry> name: "root" password: "x" uid: 0 gid: 0 real-name: "System >) In unknown file: 2 (string-join ("root" "x" "0" "0" "System administrator" "/root" #t) ":" #<undefined>) In ice-9/boot-9.scm: 1685:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure string-append: Wrong type (expecting string): #t Tobias Geerinckx-Rice2023-08-20
* gnu: vbz-compression: Update to 1.0.3.•••* gnu/packages/bioinformatics.scm (vbz-compression): Update to 1.0.3. Signed-off-by: Christopher Baines <mail@cbaines.net> Greg Hogan2023-08-27
* gnu: spdlog: Fix tests.•••* gnu/packages/patches/spdlog-fix-tests.patch: New file. * gnu/local.mk: Add it. * gnu/packages/logging.scm (spdlog)[source]: Use patch. Signed-off-by: Christopher Baines <mail@cbaines.net> Greg Hogan2023-08-27
* gnu: catch2: Update to 3.4.0.•••* gnu/packages/check.scm (catch2): Update to 3.4.0. Signed-off-by: Christopher Baines <mail@cbaines.net> Greg Hogan2023-08-27
* gnu: emacs-corfu-doc-terminal: Update to 0.9.•••* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): Update to 0.9. Signed-off-by: Christopher Baines <mail@cbaines.net> Cayetano Santos2023-08-27
* gnu: emacs-gptel: Update to 0.4.0.•••* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.4.0. Signed-off-by: Christopher Baines <mail@cbaines.net> Cayetano Santos2023-08-27
* gnu: python-graph-tool: Update to 2.57.•••* gnu/packages/graph.scm (python-graph-tool): Update to 2.57. [propagated-inputs]: Add python-zstandard. Signed-off-by: Christopher Baines <mail@cbaines.net> Greg Hogan2023-08-27
* gnu: gemmlowp: Update to 0.1-1.08e4bb3.•••* gnu/packages/machine-learning.scm (gemmlowp): Update to 0.1-1.08e4bb3. Signed-off-by: Christopher Baines <mail@cbaines.net> Andy Tai2023-08-27
* Update tex team.•••* etc/teams.scm.in: Add gnu/packages/texlive.scm to the files and Andreas Enge to the members of the tex team. Andreas Enge2023-08-27
* gnu: Add tree-sitter-cmake.•••* gnu/packages/tree-sitter.scm (tree-sitter-cmake): New variable. Hilton Chain2023-08-27
* gnu: phantomsocks: Update to 0.0.0-20230811053544-53b995bdab83.•••* gnu/packages/networking.scm (phantomsocks): Update to 0.0.0-20230811053544-53b995bdab83. [propagated-inputs]: Move go-github-com-google-gopacket and go-github-com-macronut-go-tproxy to... [inputs]: ...here. Hilton Chain2023-08-27
* gnu: picard: Update to 2.9.1.•••* gnu/packages/music.scm (picard): Update to 2.9.1. [uri]: Switch mirror. [#:phases]: Add phase 'set-HOME. Remove phase 'delete-failing-test. Hilton Chain2023-08-27
* gnu: emacs-orderless: Update to 1.0.•••* gnu/packages/emacs-xyz.scm (emacs-orderless): Update to 1.0, previously used commit was pointing to 0.8. Signed-off-by: Hilton Chain <hako@ultrarare.space> Piotr Kwiecinski2023-08-27
* gnu: emacs-hide-mode-line: Update to 1.0.3.•••* gnu/packages/emacs-xyz.scm (emacs-hide-mode-line): Update to 1.0.3. Signed-off-by: Hilton Chain <hako@ultrarare.space> Fabio Natali2023-08-27
* gnu: emacs-helpful: Update to 0.21.•••* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.21. Signed-off-by: Hilton Chain <hako@ultrarare.space> Cayetano Santos2023-08-27
* gnu: libsigrokdecode: Update to 0.5.3-0.e6962b3, fix build.•••* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.3-0.e6962b3. [source]: Use git-fetch. Remove patches. [native-inputs]: Add libtool. [arguments]<#:phases>: Remove bootstrap phase. * gnu/packages/patches/libsigrokdecode-python3.9-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Lu Hui2023-08-27
* gnu-maintenance: Consider Qt source tarballs as "release files".•••* guix/gnu-maintenance.scm (release-file?): Use positive logic in doc. Add a special case for Qt source archives. * tests/gnu-maintenance.scm ("release-file?"): Update test. Maxim Cournoyer2023-08-26
* gnu-maintenance: Allow mirror URLs to fallback to the generic HTML updater.•••* guix/gnu-maintenance.scm (http-url?): Extract from html-updatable-package?, modify to return the HTTP URL, and support the mirror:// scheme. (%disallowed-hosting-sites): New variable, extracted from html-updatable-package. (html-updatable-package?): Rewrite a mirror:// URL to an HTTP or HTTPS one. * guix/download.scm (%mirrors): Update comment. Maxim Cournoyer2023-08-26
* gnu-maintenance: Add support to rewrite version in URL path.•••Fixes <https://issues.guix.gnu.org/64015>. Fixes <https://issues.guix.gnu.org/65304>. Previously, the generic HTML updater would only look for the list of files found at the parent of its current source URL, ignoring that the URL may embed the version elsewhere in its path. This could cause 'guix refresh' to report no updates available, while in fact there were, such as for 'libuv'. * guix/gnu-maintenance.scm (strip-trailing-slash): New procedure. (%version-rx): New variable. (rewrite-url): New procedure. (import-html-release): New rewrite-url? argument. When true, use the above procedure. (import-html-updatable-release): Call import-html-release with #:rewrite-url set to #t. * tests/gnu-maintenance.scm ("rewrite-url, to-version specified") ("rewrite-url, without to-version"): New tests. Maxim Cournoyer2023-08-26
* gnu-maintenance: Extract 'canonicalize-url' from 'import-html-release'.•••* guix/gnu-maintenance.scm (canonicalize-url): New procedure, extracted from... (import-html-release): ... here. Use it. Rename inner PACKAGE variable to NAME, to explicit it is a string and not a package object. Maxim Cournoyer2023-08-26
* gnu-maintenance: Document nested procedures in 'import-html-release'.•••* guix/gnu-maintenance.scm (import-html-release): Add docstring to the 'file->signature/guess' and 'url->release' nested procedures. Maxim Cournoyer2023-08-26
* gnu-maintenance: Accept package object in 'import-html-release' procedure.•••This is in preparation for a new URL rewriting feature, which will need to have the current version information available. * guix/gnu-maintenance.scm (import-html-release): Update doc. Adjust default value of the DIRECTORY argument. Bind PACKAGE in lexical scope so that its value there is unchanged. (import-savannah-release, import-kernel.org-release) (import-html-updatable-release): Adjust accordingly. Maxim Cournoyer2023-08-26
* gnu-maintenance: Fix indentation.•••* guix/gnu-maintenance.scm: Re-indent file. Maxim Cournoyer2023-08-26
* gnu-maintenance: Extract url->links procedure.•••* guix/gnu-maintenance.scm (url->links): New procedure. (import-html-release): Use it. Maxim Cournoyer2023-08-26
* gnu-maintenance: Fix docstring.•••* guix/gnu-maintenance.scm (import-kernel.org-release): Fix docstring. Maxim Cournoyer2023-08-26
* gnu-maintenance: Make base-url argument of import-html-release required.•••It doesn't make sense to have it default to something like "https://kernel.org/pub"; it should always be provided explicitly. * guix/gnu-maintenance.scm (import-html-release) <#:base-url>: Turn keyword argument into a positional argument. Update doc. * guix/gnu-maintenance.scm (import-savannah-release): Adjust call accordingly. (import-kernel.org-release): Likewise. (import-html-updatable-release): Likewise. Maxim Cournoyer2023-08-26
* gnu: libmtp: Update to 1.1.21.•••* gnu/packages/libusb.scm (libmtp): Update to 1.1.21. Signed-off-by: Christopher Baines <mail@cbaines.net> fanquake2023-08-26
* gnu: neomutt: Update to 20230517.•••* gnu/packages/mail.scm (neomutt): Update to 20230517. Signed-off-by: Christopher Baines <mail@cbaines.net> flabbergasted2023-08-26
* gnu: guix-build-coordinator: Update to 0-87.06a4469.•••* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-87.06a4469. Christopher Baines2023-08-26
* services: nar-herder: Specify a working directory.•••Mostly so that core dumps end up here. * gnu/services/guix.scm (nar-herder-shepherd-services): Specify a working directory. Christopher Baines2023-08-26
* services: guix-data-service: Specify a working directory.•••Mostly so that core dumps end up here. * gnu/services/guix.scm (guix-data-service-shepherd-services): Specify a working directory. Christopher Baines2023-08-26
* services: guix-build-coordinator: Specify a working directory.•••Mostly so that core dumps end up here. * gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Specify a working directory. Christopher Baines2023-08-26
* gnu: pkgconf: Update to 2.0.2.•••* gnu/packages/pkg-config.scm (pkgconf): Update to 2.0.2. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Zheng Junjie2023-08-26
* gnu: xsecurelock: Update to 1.8.0.•••* gnu/packages/xdisorg.scm (xsecurelock): Update to 1.8.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> kiasoc52023-08-26
* gnu: ydotool: Update to 1.0.4.•••* gnu/packages/xdisorg.scm (ydotool): Update to 1.0.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> kiasoc52023-08-26
* gnu: xlockmore: Update to 5.72.•••* gnu/packages/xdisorg.scm (xlockmore): Update to 5.72. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> kiasoc52023-08-26
* gnu: autorandr: Update to 1.14.•••* gnu/packages/xdisorg.scm (autorandr): Update to 1.14. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> kiasoc52023-08-26
* gnu: mympd: Update to 11.0.4.•••* gnu/packages/mpd.scm (mympd): Update to 11.0.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Bruno Victal2023-08-26
* gnu: rizin: Update to 0.6.1.•••* gnu/packages/engineering.scm (rizin): Update to 0.6.1. [arguments]<#:phases>: Enable a now passing test (analysis_var). 宋文武2023-08-26
* gnu: freedroidrpg: Update to 1.0.•••* gnu/packages/games.scm (freedroidrpg): Update to 1.0. 宋文武2023-08-26
* gnu: gnubg: Update to 1.07.001.•••* gnu/packages/games.scm (gnubg): Update to 1.07.001. 宋文武2023-08-26
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