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* gnu: Add r-affyio.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-affyio): New variable.
* gnu: Add r-mzr.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-mzr): New variable.
* gnu: Add r-protgenerics.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-protgenerics): New variable.
* gnu: Add r-maldiquant.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-maldiquant): New variable.
* gnu: Add r-raremetals2.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-raremetals2): New variable.
* gnu: Add r-seqminer.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (r-seqminer): New variable.
* gnu: Add r-compquadform.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/statistics.scm (r-compquadform): New variable.
* gnu: Add ribodiff.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (ribodiff): New variable.
* gnu: Add hisat2.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/bioinformatics.scm (hisat2): New variable.
* gnu: Add r-fivethirtyeight.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/statistics.scm (r-fivethirtyeight): New variable.
* gnu: powertabeditor: Update to 2.0.0-alpha9.Ricardo Wurmus2017-01-17
| | | | | | * gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha9. [source]: Simplify snippet. [arguments]: Adjust phases; remove unnecessary configure flag.
* Revert "gnu: cups-filters: Disable mutool integration."Leo Famulari2017-01-17
| | | | | | | This change would cause 594 packages to be rebuilt, so it was moved to the staging branch. This reverts commit 58a7bbc5fe52f20910fb0fe7fddb9012f2049034.
* gnu: webkitgtk: Update to 2.14.3 [security fixes].Leo Famulari2017-01-17
| | | | | | Fixes CVE-2016-{7586,7589,7592,7599,7623,7632,7635,7639,7641,7645,7652,7654,7656}. * gnu/packages/webkit.scm (webkitgtk): Update to 2.14.3.
* gnu: cups-filters: Disable mutool integration.Tobias Geerinckx-Rice2017-01-17
| | | | | | * gnu/packages/cups.scm (cups-filters)[arguments]: Add ‘--disable-mutool’ to #:configure-flags. [inputs]: Remove mupdf.
* gnu: libpsl: Update to 0.17.0.Tobias Geerinckx-Rice2017-01-17
| | | | * gnu/packages/web.scm (libpsl): Update to 0.17.0.
* gnu: proxychains-ng: Update to 4.12.Tobias Geerinckx-Rice2017-01-17
| | | | * gnu/packages/networking.scm (proxychains-ng): Update to 4.12.
* gnu: password-store: Install bash completions.Marius Bakke2017-01-17
| | | | | * gnu/packages/password-utils.scm (password-store)[arguments]: Add 'install-shell-completions' phase.
* gnu: gnucash: Update to 2.6.15.Ricardo Wurmus2017-01-17
| | | | * gnu/packages/gnucash.scm (gnucash): Update to 2.6.15.
* gnu: Add proj.4.Björn Höfling2017-01-17
| | | | | | | * gnu/packages/geo.scm (proj.4): New variable. (gnome-maps): Use license: prefix. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: xscreensaver: Update to 5.36.Marius Bakke2017-01-17
| | | | * gnu/packages/xdisorg.scm (xscreensaver): Update to 5.36.
* gnu: perl-image-exiftool: Update to 10.40.Leo Famulari2017-01-17
| | | | | * gnu/packages/photo.scm (perl-image-exiftool): Update to 10.40. [synopsis, description]: Mention more capabilities.
* gnu: ghc-quickcheck-instances: Update to 0.3.12.Ricardo Wurmus2017-01-17
| | | | | * gnu/packages/haskell.scm (ghc-quickcheck-instances): Update to 0.3.12. [inputs]: Add ghc-scientific and ghc-vector.
* gnu: imagemagick: Update to 6.9.7-4 [security fixes].Leo Famulari2017-01-16
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-4.
* gnu: Add scrypt.Leo Famulari2017-01-16
| | | | * gnu/packages/crypto.scm (scrypt): New variable.
* gnu: Add emacs-stripe-buffer.Ricardo Wurmus2017-01-16
| | | | * gnu/packages/emacs.scm (emacs-stripe-buffer): New variable.
* gnu: Add emacs-git-timemachine.Ricardo Wurmus2017-01-16
| | | | * gnu/packages/emacs.scm (emacs-git-timemachine): New variable.
* gnu: guile-sqlite3: Provide a new source URL.Ludovic Courtès2017-01-16
| | | | * gnu/packages/guile.scm (guile-sqlite3)[home-page]: Change.
* file-systems: 'file-system-needed-for-boot?' is #t for parents of the store.Ludovic Courtès2017-01-16
| | | | | | | | | | | | Suggested by John Darrington <john@darrington.wattle.id.au>. * gnu/system/file-systems.scm (%not-slash): New variable. (file-prefix?): New procedure. (file-system-needed-for-boot?): Use it to check whether FS holds the store. * tests/file-systems.scm ("file-system-needed-for-boot?"): New test. * gnu/tests/install.scm (%separate-store-os)[file-systems]: Remove 'needed-for-boot?' field for "/gnu".
* gnu: Add r-centipede.Ricardo Wurmus2017-01-16
| | | | * gnu/packages/bioinformatics.scm (r-centipede): New variable.
* gnu: Add ocaml-lwt.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-lwt): New variable.
* gnu: Add ocaml-ssl.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-ssl): New variable.
* gnu: Add ocaml-react.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-react): New variable.
* gnu: Add ocaml-ppx-tools.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-ppx-tools): New variable.
* gnu: Add ocaml-alcotest.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-alcotest): New variable.
* gnu: Add ocaml-astring.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-astring): New variable.
* gnu: Add ocaml-fmt.Julien Lepiller2017-01-16
| | | | * gnu/packages/ocaml.scm (ocaml-fmt): New variable.
* gnu: camlzip: Install both modules.Julien Lepiller2017-01-16
| | | | | * gnu/packages/ocaml.scm (camlzip) [arguments]: Install both zip and camlzip modules.
* gnu: Add python-autopep8.Thomas Danckaert2017-01-16
| | | | | | * gnu/packages/python.scm (python-autopep8, python2-autopep8): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: kdevelop: Set more paths in wrapper script.Thomas Danckaert2017-01-16
| | | | | | | | * gnu/packages/kde.scm (kdevelop)[arguments]: Add more paths in wrap-executable: add "/share" output of kdevplatform and kcmutils to $XDG_DATA_DIRS; add "lib/plugins" from user profile to $QT_PLUGIN_PATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: kdevelop: Update to 5.0.3.Thomas Danckaert2017-01-16
| | | | | | * gnu/packages/kde.scm (kdevelop, kdevplatform): Update to 5.0.3. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* grafts: Preserve the cache across recursive calls.Ludovic Courtès2017-01-16
| | | | | | | | | | | Before this commit, we'd lose the cache across recursive calls to 'cumulative-grafts', which isn't great performance-wise. This bug was already present before d38bc9a9f6feefc465964531520fee5663a12f48. * guix/grafts.scm (with-cache): In the miss case, call 'current-state' after EXP has been evaluated.
* grafts: Actually cache grafts during the derivation DAG traversal.Ludovic Courtès2017-01-16
| | | | | | | | | | | This fixes a regression introduced in d38bc9a9f6feefc465964531520fee5663a12f48 whereby the cache was effectively disabled. Reported by Thomas Danckaert <thomas.danckaert@gmail.com>. * guix/grafts.scm (with-cache): In the cache miss case, wrap body in 'mbegin'.
* gnu: linux-libre: Update to 4.9.4.Mark H Weaver2017-01-16
| | | | | * gnu/packages/linux.scm (%linux-libre-version, %linux-libre-hash) (linux-libre): Update to 4.9.4.
* gnu: linux-libre@4.4: Update to 4.4.43.Mark H Weaver2017-01-16
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.43.
* gnu: dwm: Add '.desktop' file.ng02017-01-16
| | | | | | | | | Fixes <https://bugs.gnu.org/25438>. * gnu/packages/suckless.scm (dwm)[arguments]: Add 'install-xsession' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: dwm: Use modify-phases.ng02017-01-16
| | | | | | * gnu/packages/suckless.scm (dwm): Use modify-phases. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* profiles: Export 'ca-certificate-bundle'.Christopher Baines2017-01-16
| | | | | | | | * guix/profiles.scm: Export ca-certificate-bundle, such that it can be used in other G-expressions. This is useful where these G-expressions run programs that require a ca-certificate-bundle, e.g. git. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: Export 'service-extension' procedures.Christopher Baines2017-01-16
| | | | | | | | | | * gnu/services.scm: Export service-extension-target and service-extension-compute. This allows for greater extensiblity of services by enabling service extensions to be wrapped. For example, the parameters passed to the compute function can be modified, or the return value of the compute function can be modified. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: zathura-pdf-poppler: Update to 0.2.7.Marius Bakke2017-01-16
| | | | * gnu/packages/pdf.scm (zathura-pdf-poppler): Update to 0.2.7.
* gnu: zathura-djvu: Update to 0.2.6.Marius Bakke2017-01-16
| | | | * gnu/packages/pdf.scm (zathura-djvu): Update to 0.2.6.
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