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* gnu: r-plotrix: Update to 3.7-1.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.7-1.
* gnu: r-stringr: Update to 1.3.1.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/statistics.scm (r-stringr): Update to 1.3.1.
* gnu: r-bit: Update to 1.1-13.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/statistics.scm (r-bit): Update to 1.1-13.
* gnu: dash: Update to 0.5.10.1.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/shells.scm (dash): Update to 0.5.10.1.
* gnu: python-ddt: Update to 1.1.3.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/python.scm (python-ddt): Update to 1.1.3.
* gnu: python-netifaces: Update to 0.10.7.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/python.scm (python-netifaces): Update to 0.10.7.
* gnu: python-numexpr: Update to 2.6.5.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/python.scm (python-numexpr): Update to 2.6.5.
* gnu: libfm: Update to 1.3.0.2.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/lxde.scm (libfm): Update to 1.3.0.2.
* gnu: libnftnl: Update to 1.1.0.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/linux.scm (libnftnl): Update to 1.1.0.
* gnu: libraw: Update to 0.18.11.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/photo.scm (libraw): Update to 0.18.11.
* gnu: r-desolve: Update to 1.21.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/maths.scm (r-desolve): Update to 1.21.
* gnu: rng-tools: Use INVOKE.Tobias Geerinckx-Rice2018-05-17
| | | | | * gnu/packages/linux.scm (rng-tools)[arguments]: Substitute INVOKE for SYSTEM* and explicitly return #t from phase.
* gnu: rng-tools: Update to 6.2.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/linux.scm (rng-tools): Update to 6.2.
* gnu: python-graphviz: Update to 0.8.3.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/graphviz.scm (python-graphviz): Update to 0.8.3.
* gnu: usbutils: Update to 010.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/linux.scm (usbutils): Update to 010.
* gnu: phonon: Update to 4.10.1.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/kde-frameworks.scm (phonon): Update to 4.10.1.
* gnu: graphicsmagick: Update to 1.3.29.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.29.
* gnu: feh: Update to 2.26.2.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/image-viewers.scm (feh): Update to 2.26.2.
* gnu: youtube-dl: Update to 2018.05.09.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2018.05.09.
* gnu: links: Update to 2.16.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/web-browsers.scm (links): Update to 2.16.
* gnu: lynx: Update to 2.8.9dev.18.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/web-browsers.scm (lynx): Update to 2.8.9dev.18.
* gnu: i3status: Update to 2.12.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/wm.scm (i3status): Update to 2.12.
* gnu: perl-xml-compile-wsdl11: Update to 3.07.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/xml.scm (perl-xml-compile-wsdl11): Update to 3.07.
* gnu: perl-xml-compile-tester: Update to 0.91.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/xml.scm (perl-xml-compile-tester): Update to 0.91.
* gnu: dunst: Update to 1.3.2.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/dunst.scm (dunst): Update to 1.3.2.
* gnu: uim: Update to 1.8.8.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/xorg.scm (uim): Update to 1.8.8.
* gnu: maim: Update to 5.5.1.Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/xdisorg.scm (maim): Update to 5.5.1.
* gnu: prosody: Update to 0.10.1 [security fixes].Tobias Geerinckx-Rice2018-05-17
| | | | * gnu/packages/messaging.scm (prosody): Update to 0.10.1.
* gnu: dolphin-emu: Update to commit 47fd8c6eff4cdea7660d0fa78040f98d1d4fa136.Rutger Helling2018-05-16
| | | | | | | * gnu/packages/emulators.scm (dolphin-emu): Update to commit 47fd8c6eff4cdea7660d0fa78040f98d1d4fa136. [arguments]: Add 'fixgcc7 phase. [native-inputs]: Add gcc@7 since building with gcc@5 doesn't work anymore.
* gnu: wine: Update to 3.0.1.Rutger Helling2018-05-16
| | | | * gnu/packages/wine.scm (wine): Update to 3.0.1.
* gnu: emacs-orgalist: Fix texinfo markup in description.Gábor Boskovits2018-05-16
| | | | | | * gnu/packages/emacs.scm (emacs-orgalist)[description]: Modify. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* doc: Update 'guix size' example.Ludovic Courtès2018-05-16
| | | | * doc/guix.texi (Invoking guix size): Update example.
* doc: Improve 'guix size' documentation.Ludovic Courtès2018-05-16
| | | | | | | | | Suggested by Martin Castillo <castilma@uni-bremen.de>. Fixes <https://bugs.gnu.org/31456>. * doc/guix.texi (Invoking guix size): Clarify that 'guix size' looks for ungrafted packages. Clarify that it can be passed several package specifications.
* gnu: nano: Update to 2.9.7.Eric Bavier2018-05-15
| | | | * gnu/packages/nano.scm: Update to 2.9.7.
* gnu: python-statsmodels: Fix build.Ricardo Wurmus2018-05-16
| | | | | | | | * gnu/packages/patches/python-statsmodels-fix-tests.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/statistics.scm (python-statsmodels)[source]: Remove patches. [arguments]: Disable tests; adjust build phases; add build phase "patch-for-scipy" to fix runtime error.
* gnu: filezilla: Update to 0.12.2.Tobias Geerinckx-Rice2018-05-15
| | | | * gnu/packages/ftp.scm (libfilezilla): Update to 0.12.2.
* gnu: inkscape: Disable "icon-theme.cache" generation.Danny Milosavljevic2018-05-15
| | | | | * gnu/packages/inkscape.scm (inkscape)[arguments]<#:make-flags>: Delete. <#:phases>[patch-icon-cache-generator]: Add phase.
* gnu: wesnoth: Update to 1.14.1.Arun Isaac2018-05-15
| | | | | | | * gnu/packages/games.scm (wesnoth): Update to 1.14.1. [source]: Remove wesnoth-fix-std-bad-cast.patch. * gnu/packages/patches/wesnoth-fix-std-bad-cast.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
* gnu: Add r-bsgenome-dmelanogaster-ucsc-dm6.Ricardo Wurmus2018-05-15
| | | | * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6): New variable.
* gnu: Add guile-simple-zmq.Rouby Pierre-Antoine2018-05-15
| | | | | | * gnu/package/guile.scm (guile-simple-zmq): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gexp: Disable deprecation warnings for 'imported-modules'.Ludovic Courtès2018-05-15
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/31450>. Reported by Martin Castillo <castilma@uni-bremen.de>. * guix/gexp.scm (gexp->derivation): Pass #:deprecation-warnings to 'imported-modules'. (imported-files): Add #:deprecation-warnings and pass #:env-vars to 'gexp->derivation'. (imported-modules): Add #:deprecation-warnings and pass it to 'imported-files'.
* pack: Link top-level entries of wrapped packages.Ludovic Courtès2018-05-14
| | | | | | | | | | | | Previously things like: guix pack -R guile guile-json would lead to a profile without Guile-JSON, and to an 'etc/profile' that does not define 'GUILE_LOAD_PATH'. * guix/scripts/pack.scm (wrapped-package)[build]: Link top-level entries of PACKAGE into OUTPUT.
* gnu: opencv: Ignore CVEs.Björn Höfling2018-05-14
| | | | | | | * gnu/packages/image-processing.scm (opencv)[properties]: Add a lint-hidden-cve property and add three CVEs to be ignored. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* doc: Update documentation of guix lintBjörn Höfling2018-05-14
| | | | | | | * doc/guix.texi (Invoking guix lint): Add cpe-version to example. (Invoking guix lint): Add example for lint-hidden-cve. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-orgalist.Nicolas Goaziou2018-05-14
| | | | * gnu/packages/emacs.scm (emacs-orgalist): New variable.
* gnu: services: Fix wesnothd-configuration? symbol export.Arun Isaac2018-05-14
| | | | | * gnu/services/games.scm: Export wesnothd-configuration?, not the non-existent wesnoth-configuration?.
* gnu: Add pass-rotate.Arun Isaac2018-05-14
| | | | * gnu/packages/password-utils.scm (pass-rotate): New variable.
* gnu: guile-dbi: Fix RPATH and dependencies.Arun Isaac2018-05-14
| | | | | | | | | | | Prior to this change, libguile-dbi.so was unable to find libguile-dbd-sqlite3.so. * gnu/packages/guile.scm (guile-dbi-bootstrap): New variable. (guile-dbd-sqlite3)[propagated-inputs]: Remove guile-dbi. [native-inputs]: Add guile-dbi-bootstrap. (guile-dbi)[inputs]: Add guile-dbd-sqlite3. [arguments]: Set RPATH using #:make-flags.
* gnu: mupdf: Update to 1.13.0.Efraim Flashner2018-05-14
| | | | | | | | | | * gnu/packages/pdf.scm (mupdf): Update to 1.13.0. [source]: Remove patches. * gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch, gnu/packages/patches/mupdf-CVE-2017-17858.patch, gnu/packages/patches/mupdf-CVE-2018-6544.patch, gnu/packages/patches/mupdf-CVE-2018-1000051.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: Add emacs-dts-mode.Mathieu Othacehe2018-05-14
| | | | * gnu/packages/emacs.scm (emacs-dts-mode): New variable.
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