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* gnu: linux-libre@4.4: Update to 4.4.157.Mark H Weaver2018-09-20
| | | | * gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.157.
* gnu: qbittorrent: Update to 4.1.3.fis trivial2018-09-20
| | | | | | | * gnu/packages/bittorrent.scm (qbittorrent): Update to 4.1.3. [inputs]: Use python-wrapper instead of python. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: gprolog: Update to 1.4.5.fis trivial2018-09-20
| | | | | | | * gnu/packages/gprolog.scm (gprolog): Update to 1.4.5. [source]: Add an alternate source URL. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: rsem: Update to 1.3.1.Ricardo Wurmus2018-09-20
| | | | | | | | | * gnu/packages/bioinformatics.scm (rsem): Update to 1.3.1. [source]: Fetch from git; remove patch; delete bundled samtools. [arguments]: Pass make flags; adjust phases. [inputs]: Remove ncurses and samtools-0.1; add htslib-1.3. * gnu/packages/patches/rsem-makefile.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: ghc-pandoc-citeproc: Update to 0.14.3.1.Ricardo Wurmus2018-09-20
| | | | * gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.14.3.1.
* gnu: ghc-xml-conduit: Update to 1.8.0.1.Ricardo Wurmus2018-09-20
| | | | | * gnu/packages/haskell.scm (ghc-xml-conduit): Update to 1.8.0.1. [inputs]: Add ghc-doctest.
* gnu: python2-scikit-learn: Fix check phase.Ricardo Wurmus2018-09-20
| | | | | * gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]: Override check phase to disable broken tests and pass environment variables.
* gnu: Add r-parmigene.Ricardo Wurmus2018-09-20
| | | | * gnu/packages/cran.scm (r-parmigene): New variable.
* gnu: Add emacs-dired-sidebar.Marius Bakke2018-09-20
| | | | * gnu/packages/emacs.scm (emacs-dired-sidebar): New public variable.
* gnu: eolie: Update home page.Marius Bakke2018-09-20
| | | | * gnu/packages/gnome.scm (eolie)[home-page]: Set to wiki.gnome.org/Apps/Eolie.
* gnu: services: Add iptables service.Arun Isaac2018-09-20
| | | | | | | | * gnu/services/networking.scm (<iptables-configuration>): New record type. (iptables-service-type): New variable. * gnu/tests/networking.scm (run-iptables-test): New procedure. (%test-iptables): New variable. * doc/guix.texi (Networking Services): Document it.
* gnu: u-boot: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-20
| | | | * gnu/packages/bootloaders.scm (u-boot)[home-page]: Use HTTPS.
* gnu: ccid: Update to 1.4.30.Tobias Geerinckx-Rice2018-09-20
| | | | * gnu/packages/security-token.scm (ccid): Update to 1.4.30.
* gnu: opusfile: Update to 0.11.Tobias Geerinckx-Rice2018-09-20
| | | | * gnu/packages/xiph.scm (opusfile): Update to 0.11.
* Use INVOKE in (gnu packages xdisorg).Tobias Geerinckx-Rice2018-09-20
| | | | | * gnu/packages/xdisorg.scm (scrot, unclutter, xautolock, nxbelld) [arguments]: Use INVOKE.
* Use INVOKE in (gnu packages shells).Tobias Geerinckx-Rice2018-09-20
| | | | | * gnu/packages/shells.scm (mksh)[arguments]: Use INVOKE... (scsh)[arguments]: ...and also return #t from all phases.
* gnu: Use INVOKE & return #t from Ruby package phases.Tobias Geerinckx-Rice2018-09-20
| | | | | | | | | | | | | | | * gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from all phases. * gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate) (ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins) (ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure) (ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard) (ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers) (ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer) (ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery) (ruby-rc4, ruby-concurrent)[arguments]: Likewise.
* gnu: ruby-heredoc-unindent: Fix typo in description.Tobias Geerinckx-Rice2018-09-20
| | | | * gnu/packages/ruby.scm (ruby-heredoc-unindent)[description]: Fix typo.
* Use INVOKE in (gnu packages telephony).Tobias Geerinckx-Rice2018-09-20
| | | | * gnu/packages/telephony.scm (libiax2, mumble)[arguments]: Use INVOKE.
* gnu: gourmet: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-20
| | | | * gnu/packages/nutrition.scm (gourmet)[home-page]: Use HTTPS.
* gnu: sg3-utils: Update to 1.44.Tobias Geerinckx-Rice2018-09-20
| | | | * gnu/packages/scsi.scm (sg3-utils): Update to 1.44.
* gnu: shotwell: Update to 0.28.4.Leo Famulari2018-09-19
| | | | * gnu/packages/gnome.scm (shotwell): Update to 0.28.4.
* gnu: OpenSC: Update to 0.19.0 [security fixes].Leo Famulari2018-09-19
| | | | | | | Fixes CVE-2018-{16391,16392,16393,16418,16419,16420,16421,16422,16423,16424, 16425,16426,16427}. * gnu/packages/security-token.scm (opensc): Update to 0.19.0.
* gnu: sbcl-slynk: Fix the build.Andy Patterson2018-09-19
| | | | | | | | | | | | | | | | | | | | * gnu/packages/lisp.scm (sbcl-slynk-boot0): Update to commit cbf84c36c4eca8b032e3fd16177a7bc02df3ec4c. [origin]<snippet>: Replace slynk/util references with the built system name slynk-util. Remove compile-time invocations of slynk-require. (sbcl-slynk-util): Inherit from sbcl-slynk-boot0. [inputs]: Add sbcl-slynk-boot0. [arguments]: Set an appropriate asd-file and asd-system-name. (sbcl-slynk-arglists)[arguments]: Set an appropriate asdf-system-name. (sbcl-slynk-fancy-inspector)[arguments]: Likewise. (sbcl-slynk-package-fu)[arguments]: Likewise. (sbcl-slynk-mrepl)[arguments]: Likewise. (sbcl-slynk-trace-dialog)[arguments]: Likewise. (sbcl-slynk-profiler)[arguments]: Likewise. (sbcl-slynk-indentation)[arguments]: Likewise. (sbcl-slynk-retro)[arguments]: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* build-system/asdf: Adopt asdf conventions.Andy Patterson2018-09-19
| | | | | | | | | | | The asdf documentation specifies that asdf:load-asd should be preferred to calling load on a system definition file. * guix/build/lisp-utils.scm (compile-system): Replace load with asdf:load-asd. (system-dependencies): Likewise. (test-system): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* build-system/asdf: Use invoke.Andy Patterson2018-09-19
| | | | | | | * guix/build/lisp-utils.scm (lisp-eval-program): Replace system* and error handling with invoke. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* build-system/asdf: Log lisp system invocations.Andy Patterson2018-09-19
| | | | | | | * guix/build/lisp-system.scm: (lisp-eval-program): Log the arguments to system*. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* build-system/asdf: Handle all asdf dependency specifications.Andy Patterson2018-09-19
| | | | | | | | | | | | | | | Add support for dependencies of the form (:version <name> <version>), (:feature <feature> <dependency-specification>) and (:require <module-name>), as defined by <https://common-lisp.net/project/asdf/asdf.html#The-defsystem-grammar>. * guix/build/lisp-utils.scm (normalize-dependency): New variable. (make-asd-file)[dependencies]: Use it to generate dependencies with normalized names. [dependency-name]: New variable. [registry]: Use it to flatten the normalized dependencies. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: networking: Remove unbound variable reference in 'stop'.Ludovic Courtès2018-09-19
| | | | | | * gnu/services/base.scm (static-networking-shepherd-service): Remove spurious ":" in 'stop' method inadvertently introduced in commit c9436025a90b86047ba2203d58bbf238f8f9b2f9.
* services: udev: Simplify 'start' method.Ludovic Courtès2018-09-19
| | | | | | * gnu/services/base.scm (udev-shepherd-service)[start](find): Remove. (udev): Hardwire the eudev file name. Use 'fork+exec-command' instead of 'primitive-fork' and 'exec-command'.
* gnu: glm: Update to 0.9.9.2.Marius Bakke2018-09-19
| | | | * gnu/packages/maths.scm (glm): Update to 0.9.9.2.
* gnu: feh: Update to 2.28.Marius Bakke2018-09-19
| | | | * gnu/packages/image-viewers.scm (feh): Update to 2.28.
* gnu: arpack-ng: Update to 3.6.3.Marius Bakke2018-09-19
| | | | * gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
* gnu: arpack-ng: Don't use unstable tarball.Marius Bakke2018-09-19
| | | | * gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
* gnu: Reinstate xf86-video-ast.Marius Bakke2018-09-19
| | | | | | * gnu/packages/patches/xf86-video-ast-remove-mibstore.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/xorg.scm (xf86-video-ast): New public variable.
* gnu: rust@1.19.0: Install libtest.Danny Milosavljevic2018-09-19
| | | | | * gnu/packages/rust.scm (rust-1.19)[arguments]<#:phases>[build]: Build libtest.
* gnu: mrustc: Enable tests.Danny Milosavljevic2018-09-19
| | | | | * gnu/packages/rust.scm (mrustc)[arguments]: Add #:test-target. <#:phases>[install]: Don't install test output.
* gnu: git-credential-netrc: Add Git.pm to PERL5LIB.Pierre Neidhardt2018-09-19
| | | | * gnu/packages/version-control.scm (git)[credential-netrc]: Add Git.pm to PERL5LIB.
* pull: Use /etc/ssl/certs by default if it exists and is non-empty.Ludovic Courtès2018-09-18
| | | | | | | | | | | | | | | | Previously, on machines where /etc/ssl/certs did exist, we'd have this: $ unset SSL_CERT_DIR $ unset SSL_CERT_FILE $ guix pull Updating channel 'guix' from Git repository at 'https://git.savannah.gnu.org/git/guix.git'... guix pull: error: Git error: the SSL certificate is invalid This is because we'd let OpenSSL look for certificates in its default location, which is an empty directory in its own prefix. * guix/scripts/pull.scm (honor-x509-certificates): New procedure. (guix-pull): Use it instead of calling 'honor-lets-encrypt-certificates!'.
* pull: Assume 'set-tls-certificate-locations!' is available.Ludovic Courtès2018-09-18
| | | | | * guix/scripts/pull.scm (honor-lets-encrypt-certificates!): Call 'set-tls-certificate-locations!' unconditionally.
* gnu: Add guile-debbugs.Ludovic Courtès2018-09-18
| | | | * gnu/packages/guile.scm (guile-debbugs): New variable.
* describe: Work correctly on generation-less profiles.Ludovic Courtès2018-09-18
| | | | | | | | | | | | Previously a command like: $(readlink -f ~/.config/guix/current)/bin/guix describe would succeed without printing anything. * guix/scripts/describe.scm (display-profile-info): Don't call 'generation-file-name' when NUMBER is zero. * guix/scripts/pull.scm (display-profile-content): Likewise.
* tests: Skip 'self-contained-tarball' test unconditionally.Ludovic Courtès2018-09-18
| | | | * tests/pack.scm ("self-contained-tarball"): Skip unconditionally.
* store: Add another missing buffer flush.Ludovic Courtès2018-09-18
| | | | | | | This is a followup to 3809824199cdd52446176c9cd4761dd09f732542. * guix/store.scm (add-file-tree-to-store): Add 'write-buffered-output' call.
* gnu: Go 1.10: Update to 1.10.4.Leo Famulari2018-09-18
| | | | * gnu/packages/golang.scm (go-1.10): Update to 1.10.4.
* gnu: busybox: Update to 1.29.3.Tobias Geerinckx-Rice2018-09-18
| | | | * gnu/packages/busybox.scm (busybox): Update to 1.29.3.
* gnu: xorriso: Update to 1.5.0.Tobias Geerinckx-Rice2018-09-18
| | | | * gnu/packages/cdrom.scm (xorriso): Update to 1.5.0.
* gnu: libisofs: Update to 1.5.0.Tobias Geerinckx-Rice2018-09-18
| | | | * gnu/packages/cdrom.scm (libisofs): Update to 1.5.0.
* gnu: libburn: Update to 1.5.0.Tobias Geerinckx-Rice2018-09-18
| | | | * gnu/packages/cdrom.scm (libburn): Update to 1.5.0.
* gnu: rc: Simplify.Tobias Geerinckx-Rice2018-09-18
| | | | | | | | * gnu/packages/shells.scm (rc)[source]: Replace magic commit ID with the tagged release. Use GIT-FILE-NAME. [arguments]: Remove 'autoreconf' phase (relying on Guix's built-in 'bootstrap' phase instead) and adjust the ordering of 'patch-trip.rc' accordingly.
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