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* gnu: Add libgda.Leo Prikler2020-09-15
| | | | | | * gnu/packages/gnome.scm (libgda): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: jack-2: Update to 1.9.14.Mike Rosset2020-09-15
| | | | | | | * gnu/packages/audio.scm (jack-2): Update to 1.9.14. [arguments]: Add environment variable to phase 'set-linkflags. Signed-off-by: Andreas Enge <andreas@enge.fr>
* gnu: guix: Update to 1c21468.Ludovic Courtès2020-09-15
| | | | * gnu/packages/package-management.scm (guix): Update to 1c21468.
* gnu: fio: Update to 3.23.Tobias Geerinckx-Rice2020-09-15
| | | | * gnu/packages/benchmark.scm (fio): Update to 3.23.
* gnu: htop: Update to 3.0.2.Tobias Geerinckx-Rice2020-09-15
| | | | | * gnu/packages/admin.scm (htop): Update to 3.0.2. [native-inputs]: Remove python-wrapper.
* import: cpan: Export cpan-release-module.Tobias Geerinckx-Rice2020-09-15
| | | | * guix/import/cpan.scm: Fix typo.
* gnu: Add goxel.Gabriel Arazas2020-09-15
| | | | | | * gnu/packages/graphics.scm (goxel): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* authenticate: Encode strings as ISO-8859-1.Ludovic Courtès2020-09-15
| | | | | | | | | | Fixes <https://bugs.gnu.org/43421>. * guix/scripts/authenticate.scm (read-command): Decode strings as ISO-8859-1, not UTF-8. (guix-authenticate)[send-reply]: Encode strings as ISO-8859-1, not UTF-8. * tests/guix-authenticate.sh: Add test.
* services: bitlbee: Support libpurple plugins.Ludovic Courtès2020-09-15
| | | | | * gnu/services/messaging.scm (bitlbee-shepherd-service): Pass PURPLE_PLUGIN_PATH as #:environment-variables.
* gnu: sbcl-trivial-clipboard: Update to 20200904.Pierre Neidhardt2020-09-15
| | | | * gnu/packages/lisp-xyz.scm (sbcl-trivial-clipboard): Update to 20200904.
* gnu: waybar: Fix build.Efraim Flashner2020-09-15
| | | | | | | Reported by bdju. * gnu/packages/pretty-print.scm (fmt-6): New variable. * gnu/packages/wm.scm (waybar)[inputs]: Replace fmt with fmt-6.
* gnu: emacs-org: Update to 9.4.Nicolas Goaziou2020-09-15
| | | | | * gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.4. (emacs-org-contrib): Update to 20200914.
* gnu: roffit: Adjust install phase.Efraim Flashner2020-09-15
| | | | | | * gnu/packages/groff.scm (roffit)[arguments]: Remove make-flags. Remove custom 'pre-install phase. Replace 'install phase to also install manpage.
* gnu: roffit: Wrap binary.Efraim Flashner2020-09-15
| | | | | | | Fixes <https://debbugs.gnu.org/43306>. * gnu/packages/groff.scm (roffit)[arguments]: Add 'wrap-binary phase to help find perl libraries.
* gnu: bsequencer: Update to 1.8.0.Ricardo Wurmus2020-09-15
| | | | * gnu/packages/music.scm (bsequencer): Update to 1.8.0.
* services: docker: Fix service definition.Oleg Pykhalov2020-09-15
| | | | | | | | | This commit follows a404716d411cf7cd49ff02e3100f0bbf6622d6d5. * gnu/services/docker.scm (docker-configuration)[docker-cli]: New record field. (docker-service-type): Use this. * doc/guix.texi (Miscellaneous Services)[Docker Service]: Document this.
* gnu: kdenlive: Change source URL to follow permanent redirection.Prafulla Giri2020-09-14
| | | | | | | * gnu/packages/kde.scm (kdenlive)[source]: Change url to follow permanent redirection. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: kde: kdenlive: Make breeze theme available at runtime.Prafulla Giri2020-09-14
| | | | | | | | | * gnu/packages/kde.scm (kdenlive): [inputs]: Add breeze. [arguments]: In wrap-program phase, add XDG_DATA_DIRS to include the 'share' sub-directory of the package breeze. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ripmime.Sébastien Lerique2020-09-14
| | | | | | * gnu/packages/mail.scm (ripmime): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: guix: Update to 846403e.Ludovic Courtès2020-09-14
| | | | * gnu/packages/package-management.scm (guix): Update to 846403e.
* services: docker: Fix service definition.Efraim Flashner2020-09-14
| | | | | | | This is a follow-up to 8422a67dc16af4dd5eb82180463aa7a0b362d5b9. * gnu/services/docker.scm (docker-service-type): Use a composed list for packages in profile-service-type.
* gnu: maven-compiler-plugin: Don't use unstable tarball.Efraim Flashner2020-09-14
| | | | | * gnu/packages/maven.scm (maven-compiler-plugin)[source]: Download using git-fetch.
* gnu: maven-resources-plugin: Don't use unstable tarball.Efraim Flashner2020-09-14
| | | | | * gnu/packages/maven.scm (maven-resources-plugin)[source]: Download using git-fetch.
* gnu: maven-jar-plugin: Don't use unstable tarball.Efraim Flashner2020-09-14
| | | | | * gnu/packages/maven.scm (maven-jar-plugin)[source]: Download using git-fetch.
* gnu: java-hdrhistogram: Don't use unstable tarball.Efraim Flashner2020-09-14
| | | | | | * gnu/packages/java.scm (java-hdrhistogram)[source]: Download using git-fetch. [arguments]: Add phase to make source writable.
* gnu: r-wgcna: Move to (gnu packages bioconductor).Ricardo Wurmus2020-09-14
| | | | | | | This is a follow-up to commit 6e0ab26f31cd2bb7e5d88719d3d458df68c1963e. * gnu/packages/cran.scm (r-wgcna): Move from here... * gnu/packages/bioconductor.scm (r-wgcna): ...to here.
* gnu: r-fithic: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-fithic): Move from here... * gnu/packages/bioconductor.scm (r-fithic): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-hitc: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-hitc): Move from here... * gnu/packages/bioconductor.scm (r-hitc): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-hdf5array: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-hdf5array): Move from here... * gnu/packages/bioconductor.scm (r-hdf5array): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-rhdf5lib: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-rhdf5lib): Move from here... * gnu/packages/bioconductor.scm (r-rhdf5lib): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-beachmat: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-beachmat): Move from here... * gnu/packages/bioconductor.scm (r-beachmat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-singlecellexperiment: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-singlecellexperiment): Move from here... * gnu/packages/bioconductor.scm (r-singlecellexperiment): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-scater: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-scater): Move from here... * gnu/packages/bioconductor.scm (r-scater): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-scran: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-scran): Move from here... * gnu/packages/bioconductor.scm (r-scran): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here... * gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-rgraphviz: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/graph.scm (r-rgraphviz): Move from here... * gnu/packages/bioconductor.scm (r-rgraphviz): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-preprocesscore: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/statistics.scm (r-preprocesscore): Move from here... * gnu/packages/bioconductor.scm (r-preprocesscore): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-fourcseq: Move to (gnu packages bioconductor).zimoun2020-09-14
| | | | | | | * gnu/packages/cran.scm (r-fourcseq): Move from here... * gnu/packages/bioconductor.scm (r-fourcseq): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
* gnu: r-rgraphviz: Build reproducibly.Ricardo Wurmus2020-09-14
| | | | | | | Fixes <https://bugs.gnu.org/43398>. * gnu/packages/graph.scm (r-rgraphviz)[arguments]: Add phase "make-reproducible".
* gnu: r-quantreg: Update to 5.67.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/statistics.scm (r-quantreg): Update to 5.67.
* gnu: r-cowplot: Update to 1.1.0.Ricardo Wurmus2020-09-14
| | | | | * gnu/packages/statistics.scm (r-cowplot): Update to 1.1.0. [native-inputs]: Add r-knitr.
* gnu: r-rcpparmadillo: Update to 0.9.900.3.0.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.3.0.
* gnu: r-ggdendro: Update to 0.1.22.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.22.
* gnu: r-stringi: Update to 1.5.3.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/statistics.scm (r-stringi): Update to 1.5.3.
* gnu: r-mass: Update to 7.3-53.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/statistics.scm (r-mass): Update to 7.3-53.
* gnu: r-diversitree: Update to 0.9-14.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/cran.scm (r-diversitree): Update to 0.9-14.
* gnu: r-seurat: Update to 3.2.1.Ricardo Wurmus2020-09-14
| | | | | * gnu/packages/cran.scm (r-seurat): Update to 3.2.1. [propagated-inputs]: Remove r-ape; add r-matrixstats.
* gnu: r-rfast: Update to 2.0.1.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/cran.scm (r-rfast): Update to 2.0.1.
* gnu: r-scatterpie: Update to 0.1.5.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/cran.scm (r-scatterpie): Update to 0.1.5.
* gnu: r-forecast: Update to 8.13.Ricardo Wurmus2020-09-14
| | | | * gnu/packages/cran.scm (r-forecast): Update to 8.13.
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