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* gnu: fping: Update to 4.1.Tobias Geerinckx-Rice2018-09-24
| | | | * gnu/packages/networking.scm (fping): Update to 4.1.
* vm: Use "cache=loose" for all 9p mounts.Ludovic Courtès2018-09-23
| | | | | | | | This significantly improves read throughput when running things like "guix hash -r ...". * gnu/system/vm.scm (%linux-vm-file-systems): Add 'flags' for "store". Add "cache=loose" to every file system.
* vm: Disable deduplication for 'guix system vm-image'.Ludovic Courtès2018-09-23
| | | | | * gnu/system/vm.scm (qemu-image): Pass #:deduplicate? #f to 'root-partition-initializer'.
* database: Register each store item only once.Ludovic Courtès2018-09-23
| | | | | | | | | Fixes <https://bugs.gnu.org/32600>. Reported by Leo Famulari. * guix/store/database.scm (register-items): Check whether TO-REGISTER is in DB by calling 'path-id', and skip the reset-timestamps, registration, and deduplication phases when it is.
* database: 'register-items' shows a progress bar.Ludovic Courtès2018-09-23
| | | | | | * guix/store/database.scm (register-items): Add #:log-port. Use 'progress-reporter/bar' to show a progress report. (register-path): Pass #:log-port to 'register-items'.
* store-copy: Display a progress bar when copying store items.Ludovic Courtès2018-09-23
| | | | | * guix/build/store-copy.scm (populate-store): Add #:log-port parameter. Use 'progress-reporter/bar' to report progress.
* serialization: Remove redundancy in 'write-file'.Ludovic Courtès2018-09-23
| | | | * guix/serialization.scm (write-file): Remove redundant 'member' call.
* system: Mention '--skip-checks' in initrd diagnostics.Ludovic Courtès2018-09-23
| | | | | * gnu/system/mapped-devices.scm (check-device-initrd-modules): Add note about '--skip-checks'.
* gnu: Add emacs-synosaurus.Pierre Neidhardt2018-09-23
| | | | * gnu/packages/emacs.scm (emacs-synosaurus): New variable.
* gnu: xpra: Update to 2.3.4.Rutger Helling2018-09-23
| | | | * gnu/packages/xorg.scm (xpra): Update to 2.3.4.
* gnu: eolie: Use webkitgtk-2.22.Mark H Weaver2018-09-23
| | | | | | | * gnu/packages/gnome.scm (eolie)[native-inputs]: Add gcc-7:lib. [inputs]: Replace webkitgtk with webkitgtk-2.22. [arguments]: Add "gcc:lib" to the list of libraries to add to LD_LIBRARY_PATH. Use invoke.
* gnu: epiphany: Use webkitgtk-2.22.Mark H Weaver2018-09-23
| | | | | * gnu/packages/gnome.scm (epiphany)[native-inputs]: Add gcc-7. [inputs]: Replace webkitgtk with webkitgtk-2.22.
* gnu: webkitgtk: Add version 2.22.2.Mark H Weaver2018-09-23
| | | | * gnu/packages/webkit.scm (webkitgtk-2.22): New variable.
* gnu: Add Go 1.11.Katherine Cox-Buday2018-09-22
| | | | | | * gnu/packages/golang.scm (go-1.11): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: icecat: Add fixes from upstream mozilla-esr60 [security fixes].Mark H Weaver2018-09-22
| | | | | | | | | | | | Includes fixes for CVE-2018-12383 and CVE-2018-12385. * gnu/packages/patches/icecat-CVE-2018-12383.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to apply cleanly to IceCat 60. * gnu/packages/gnuzilla.scm (mozilla-patch): Update to fetch from mozilla-esr60. (icecat): Add selected changesets from upstream mozilla-esr60.
* Revert 'gnu: rust: Remove unused "ar" setting.'.Danny Milosavljevic2018-09-22
| | | | | | | Some versions of Rust do need it and others complain about it. For now, revert the removal entirely. This reverts commit ec944a1de97c8a523d6e1089b8c4430424297f93.
* gnu: hmmer: Update to 3.2.1.Ben Woodcroft2018-09-22
| | | | | | | | | * gnu/packages/bioinformatics.scm (hmmer): Update to 3.2.1. [origin]: Remove patch. [license]: Change to BSD-3. [supported-systems]: New field. * gnu/packages/patches/hmmer-remove-cpu-specificity.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: snap: Update to 4.2.1.4.Nicolas Goaziou2018-09-21
| | | | * gnu/packages/education.scm (snap): Update to 4.2.1.4.
* gnu: emacs-org: Update to 9.1.14.Nicolas Goaziou2018-09-21
| | | | * gnu/packages/emacs.scm (emacs-org): Update to 9.1.14.
* gnu: workrave: Update to 1.10.21.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/gnome.scm (workrave): Update to 1.10.21. [source]: Use GIT-FILE-NAME.
* gnu: emacs-password-store: Update to 1.7.3.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/emacs.scm (emacs-password-store): Update to 1.7.3.
* gnu: filezilla: Update to 3.37.1.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/ftp.scm (filezilla): Update to 3.37.1.
* gnu: wxwidgets: Update to 3.0.4.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.0.4.
* gnu: python-pyparsing: Update to 2.2.1.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/python.scm (python-pyparsing): Update to 2.2.1. [source]: Use PYPI-URI.
* gnu: rust: Remove unused "ar" setting.Danny Milosavljevic2018-09-21
| | | | | * gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove unused "ar" setting.
* doc: Add section about inferiors.Ludovic Courtès2018-09-21
| | | | | * doc/guix.texi (Inferiors): New node. (Channels): Add xref to "Inferiors".
* inferior: Add 'inferior-for-channels'.Ludovic Courtès2018-09-21
| | | | | * guix/inferior.scm (%inferior-cache-directory): New variable. (inferior-for-channels): New procedure.
* channels: Add 'channel-instances->derivation'.Ludovic Courtès2018-09-21
| | | | | | * guix/channels.scm (channel-instances->derivation): New procedure. (latest-channel-derivation): Use it. (channel-instance-derivations): Make private.
* profiles: 'packages->manifest' now accepts inferior packages.Ludovic Courtès2018-09-21
| | | | | | | | | * guix/profiles.scm (packages->manifest)[inferiors-loaded?]: New variable. [inferior->entry]: New procedure. Accept inferior packages when INFERIORS-LOADED? is true. * tests/guix-package.sh: Add test using a manifest with an inferior. * tests/inferior.scm ("packages->manifest"): New test.
* inferior: Add 'inferior-package->manifest-entry'.Ludovic Courtès2018-09-21
| | | | | | * guix/inferior.scm (inferior-package->manifest-entry): New procedure. * tests/inferior.scm (manifest-entry->list): New procedure. ("inferior-package->manifest-entry"): New test.
* inferior: Add 'inferior-package-search-paths' & co.Ludovic Courtès2018-09-21
| | | | | | | | * guix/inferior.scm (%inferior-package-search-paths) (inferior-package-native-search-paths) (inferior-package-search-paths) (inferior-package-transitive-native-search-paths): New procedures. * tests/inferior.scm ("inferior-package-search-paths"): New test.
* inferior: Add 'inferior-package-inputs' & co.Ludovic Courtès2018-09-21
| | | | | | | | | | | * guix/inferior.scm (open-inferior): Use (ice-9 match). (inferior-package-input-field, inferior-package-inputs): (inferior-package-native-inputs) (inferior-package-propagated-inputs) (inferior-package-transitive-propagated-inputs): New procedures. * tests/inferior.scm ("inferior-package-inputs"): New test. inputs fixlet
* inferior: Add 'lookup-inferior-packages'.Ludovic Courtès2018-09-21
| | | | | | | | | | | * guix/inferior.scm (<inferior>)[packages, table]: New fields. (open-inferior): Initialize these new fields. (inferior-packages): Rename to... (%inferior-packages): ... this. (inferior-packages): New procedure; force the promise. (%inferior-package-table, lookup-inferior-packages): New procedures. * tests/inferior.scm ("lookup-inferior-packages") ("lookup-inferior-packages and eq?-ness"): New tests.
* inferior: Add 'inferior-package-derivation'.Ludovic Courtès2018-09-21
| | | | | | | | | * guix/inferior.scm (read-inferior-response) (send-inferior-request): New procedures. (inferior-eval): Rewrite in terms of these. (proxy, inferior-package-derivation, inferior-package->derivation) (package-compiler): New procedures. * tests/inferior.scm ("inferior-package-derivation"): New test.
* gnu: Add r-pore.pimi2018-09-21
| | | | | | * gnu/packages/bioinformatics.scm (r-pore): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: hdf5-parallel-openmpi: Really enable parallel build.Paul Garlick2018-09-21
| | | | | | | | | | | This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set in the file H5pubconf.h. * gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add the "--enable-parallel" flag to the list of configure flags. Remove the incompatible "--enable-cxx" flag. Add 'mpi-setup' phase. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu: hdf5: Allow for absence of utility script.Paul Garlick2018-09-21
| | | | | | | * gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split' phase to check for existence of h5fc script. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: rust: Remove unused "localstatedir" setting.Danny Milosavljevic2018-09-21
| | | | | * gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[configure]: Remove unused "localstatedir" setting.
* gnu: libfilezilla: Update to 0.13.2.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/ftp.scm (libfilezilla): Update to 0.13.2. [source]: Use HTTPS.
* gnu: python-pyparsing: Update home page.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/python.scm (python-pyparsing)[home-page]: Update.
* gnu: emacs-mu4e-conversation: Fix typo in description.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/emacs.scm (emacs-mu4e-conversation)[description]: Fix 'correspondant' typo.
* gnu: kodi: Use INVOKE.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/kodi.scm (kodi)[arguments]: Substitute INVOKE for SYSTEM*.
* gnu: crossguid: Use INVOKE.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/kodi.scm (crossguid)[arguments]: Substitute INVOKE for SYSTEM*.
* gnu: icecat: Update to 60.2.0-gnu1 (pre-release).Mark H Weaver2018-09-21
| | | | | | | | | | | | | | | | * gnu/packages/gnuzilla.scm (icecat): Update to 60.2.0-gnu1. [source]: Download pre-release from alpha.gnu.org. Remove obsolete patches. Comment out the code to delete the bundled copies of libevent, cairo, harfbuzz, and graphite2. [inputs]: Use the latest ffmpeg. Comment out libevent, cairo, harfbuzz, and graphite2. [native-inputs]: Add rust and cargo. [arguments]: Remove --enable-gio and --disable-gnomeui. Add --disable-stylo. Comment out --with-system-{libevent,harfbuzz,graphite2}, --enable-system-cairo. Import %cargo-build-system-modules. Add 'patch-cargo-checksums' phase. * gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch, gnu/packages/patches/icecat-bug-1413868-pt1.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: libvpx: Add upstream security fix.Mark H Weaver2018-09-21
| | | | | | * gnu/packages/patches/libvpx-use-after-free-in-postproc.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/video.scm (libvpx)[source]: Add patch.
* gnu: python-paramiko: Update to 2.4.2 [security fixes].Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/python-crypto.scm (python-paramiko): Update to 2.4.2.
* gnu: python-paramiko: Use HTTPS home page.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/python-crypto.scm (python-paramiko)[home-page]: Use HTTPS.
* gnu: python-rencode: Update to 1.0.5.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/python.scm (python-rencode): Update to 1.0.5. [arguments]: Add a 'delete-bogus-test' phase.
* gnu: python-hdf4: Use INVOKE.Tobias Geerinckx-Rice2018-09-21
| | | | | * gnu/packages/python.scm (python-hdf4)[arguments]: Substitute INVOKE for SYSTEM*.
* gnu: s6: Update to 2.7.2.1.Tobias Geerinckx-Rice2018-09-21
| | | | * gnu/packages/skarnet.scm (s6): Update to 2.7.2.1.
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