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* gnu: Add r-bsgenome-dmelanogaster-ucsc-dm6.Ricardo Wurmus2018-05-15
| | | | * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6): New variable.
* gnu: Add guile-simple-zmq.Rouby Pierre-Antoine2018-05-15
| | | | | | * gnu/package/guile.scm (guile-simple-zmq): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gexp: Disable deprecation warnings for 'imported-modules'.Ludovic Courtès2018-05-15
| | | | | | | | | | | | Fixes <https://bugs.gnu.org/31450>. Reported by Martin Castillo <castilma@uni-bremen.de>. * guix/gexp.scm (gexp->derivation): Pass #:deprecation-warnings to 'imported-modules'. (imported-files): Add #:deprecation-warnings and pass #:env-vars to 'gexp->derivation'. (imported-modules): Add #:deprecation-warnings and pass it to 'imported-files'.
* pack: Link top-level entries of wrapped packages.Ludovic Courtès2018-05-14
| | | | | | | | | | | | Previously things like: guix pack -R guile guile-json would lead to a profile without Guile-JSON, and to an 'etc/profile' that does not define 'GUILE_LOAD_PATH'. * guix/scripts/pack.scm (wrapped-package)[build]: Link top-level entries of PACKAGE into OUTPUT.
* gnu: opencv: Ignore CVEs.Björn Höfling2018-05-14
| | | | | | | * gnu/packages/image-processing.scm (opencv)[properties]: Add a lint-hidden-cve property and add three CVEs to be ignored. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* doc: Update documentation of guix lintBjörn Höfling2018-05-14
| | | | | | | * doc/guix.texi (Invoking guix lint): Add cpe-version to example. (Invoking guix lint): Add example for lint-hidden-cve. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-orgalist.Nicolas Goaziou2018-05-14
| | | | * gnu/packages/emacs.scm (emacs-orgalist): New variable.
* gnu: services: Fix wesnothd-configuration? symbol export.Arun Isaac2018-05-14
| | | | | * gnu/services/games.scm: Export wesnothd-configuration?, not the non-existent wesnoth-configuration?.
* gnu: Add pass-rotate.Arun Isaac2018-05-14
| | | | * gnu/packages/password-utils.scm (pass-rotate): New variable.
* gnu: guile-dbi: Fix RPATH and dependencies.Arun Isaac2018-05-14
| | | | | | | | | | | Prior to this change, libguile-dbi.so was unable to find libguile-dbd-sqlite3.so. * gnu/packages/guile.scm (guile-dbi-bootstrap): New variable. (guile-dbd-sqlite3)[propagated-inputs]: Remove guile-dbi. [native-inputs]: Add guile-dbi-bootstrap. (guile-dbi)[inputs]: Add guile-dbd-sqlite3. [arguments]: Set RPATH using #:make-flags.
* gnu: mupdf: Update to 1.13.0.Efraim Flashner2018-05-14
| | | | | | | | | | * gnu/packages/pdf.scm (mupdf): Update to 1.13.0. [source]: Remove patches. * gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch, gnu/packages/patches/mupdf-CVE-2017-17858.patch, gnu/packages/patches/mupdf-CVE-2018-6544.patch, gnu/packages/patches/mupdf-CVE-2018-1000051.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
* gnu: Add emacs-dts-mode.Mathieu Othacehe2018-05-14
| | | | * gnu/packages/emacs.scm (emacs-dts-mode): New variable.
* gnu: Add ghc-containers.Tonton2018-05-13
| | | | | | * gnu/packages/haskell.scm (ghc-containers): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-array.Tonton2018-05-13
| | | | | | * gnu/packages/haskell.scm (ghc-array): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-quickcheck-2.9.Tonton2018-05-13
| | | | | | * gnu/packages/haskell-check.scm (ghc-quickcheck-2.9): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: robocut: Remove unnecessary dependency on qttools.Ludovic Courtès2018-05-13
| | | | | | | Reported by Efraim Flashner. * gnu/packages/printers.scm (robocut)[native-inputs]: Replace QTTOOLS with QTBASE, which is where 'qmake' lives.
* build: 'test-env' does not 'guix download' non-existent files.Ludovic Courtès2018-05-13
| | | | | | | Reported by uniq10. * build-aux/test-env.in: Check whether FILE exists before invoking 'guix download'.
* gnu: speedtest-cli: Update to 2.0.0.Efraim Flashner2018-05-13
| | | | * gnu/packages/networking.scm (speedtest-cli): Update to 2.0.0.
* gnu: myrepos: Fix CVE-2018-7032.Efraim Flashner2018-05-13
| | | | | | * gnu/packages/version-control.scm (myrepos)[source]: Add patch. * gnu/packages/patches/myrepos-CVE-2018-7032.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
* gnu: viewnior: Update to 1.7.Efraim Flashner2018-05-13
| | | | | | | | | | | * gnu/packages/image-viewers.scm (viewnior): Update to 1.7. [source]: Update source uri. [build-system]: Switch to meson-build-system. [arguments]: Remove custom 'autogen and 'skip-gtk-update-icon-cache phases, add 'patch-source phase. Skip tests. [native-inputs]: Remove automake, autoconf, intltool, gnome-common, libtool, which, add gettext-minimal. [home-page]: Update home-page.
* gnu: ImageMagick: Update to 6.9.9-43.Leo Famulari2018-05-13
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-43.
* gnu: Add Robocut.Ludovic Courtès2018-05-13
| | | | | * gnu/packages/printers.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* packages: 'find-packages-by-name' properly honors version prefixes.Ludovic Courtès2018-05-13
| | | | | | | | Fixes <https://bugs.gnu.org/28446>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages.scm (find-packages-by-name): Use 'version-prefix?' instead of 'string-prefix?'.
* utils: Add 'version-prefix?'.Ludovic Courtès2018-05-13
| | | | | * guix/utils.scm (version-prefix?): New procedure. * tests/utils.scm ("version-prefix?"): New test.
* gnu: hypre: Add missing dependency on Perl.Ludovic Courtès2018-05-13
| | | | | | | Previously the test suite would fail to run 'ppmquant', though it would silently ignore it. * gnu/packages/maths.scm (hypre)[native-inputs]: Add PERL.
* gnu: Go 1.10: Update to 1.10.2.Leo Famulari2018-05-12
| | | | * gnu/packages/golang.scm (go-1.10): Update to 1.10.2.
* gnu: Go 1.9: Update to 1.9.6.Leo Famulari2018-05-12
| | | | * gnu/packages/golang.scm (go-1.9): Update to 1.9.6.
* gnu: make-u-boot-package: Install "u-boot".Danny Milosavljevic2018-05-12
| | | | * gnu/packages/bootloaders.scm (make-u-boot-package): Install "u-boot".
* gnu: Add u-boot-cubieboard.Danny Milosavljevic2018-05-12
| | | | * gnu/packages/bootloaders.scm (u-boot-cubieboard): New variable.
* gnu: gst-plugins-ugly: Remove libmad from the build environment.Leo Famulari2018-05-12
| | | | | | Libmad is not used by gst-plugins-ugly since 1.12.0. * gnu/packages/gstreamer.scm (gst-plugins-ugly)[inputs]: Remove libmad.
* gnu: MPD: Remove unecessary dependency on libmad.Leo Famulari2018-05-12
| | | | | | MPD already depends on FFmpeg, which uses LAME for MP3 decoding. gnu/packages/mpd.scm (mpd)[inputs]: Remove LIBMAD.
* gnu: libreoffice: Update to 5.4.7.1.Leo Famulari2018-05-12
| | | | * gnu/packages/libreoffice.scm (libreoffice): Update to 5.4.7.1.
* gnu: wine-staging: Update to 3.8.Rutger Helling2018-05-12
| | | | * gnu/packages/wine.scm (wine-staging): Update to 3.8.
* gnu: wine-staging-patchset-data: Update to 3.8.Rutger Helling2018-05-12
| | | | * gnu/packages/wine.scm (wine-staging-patchset-data): Update to 3.8.
* gnu: gnome-disk-utility: Update to 3.28.2.Rutger Helling2018-05-12
| | | | * gnu/packages/gnome.scm (gnome-disk-utility): Update to 3.28.2.
* gnu: xpra: Update to 2.3.Rutger Helling2018-05-12
| | | | * gnu/packages/xorg.scm (xpra): Update to 2.3.
* hydra: Switch back to "-" instead of "@" in package job names.Ludovic Courtès2018-05-12
| | | | | | | | Fixes a regression introduced in ede121de426f9c56820852888a0b370f0ccbce49. Reported by Mark H Weaver <mhw@netris.org>. * build-aux/hydra/gnu-system.scm (job-name): Pass "-" as the second argument to 'package-full-name'.
* gnu: u-boot-versatilepb: Remove package.Danny Milosavljevic2018-05-12
| | | | * gnu/packages/bootloaders.scm (u-boot-versatilepb): Delete variable.
* gnu: u-boot-pine64-plus: Use bundled dtc.Danny Milosavljevic2018-05-12
| | | | | * gnu/packages/bootloaders.scm (u-boot-pine64-plus)[arguments]<#:phases> [set-environment]: Use bundled dtc.
* gnu: make-u-boot-package: Print errors to (current-error-port).Danny Milosavljevic2018-05-12
| | | | | * gnu/packages/bootloaders.scm (make-u-boot-package): Print errors to (current-error-port).
* gnu: make-u-boot-package: Sort printed configurations.Danny Milosavljevic2018-05-12
| | | | | * gnu/packages/bootloaders.scm (make-u-boot-package): Sort printed configurations.
* gnu: u-boot: Add our dtc.Danny Milosavljevic2018-05-12
| | | | * gnu/packages/bootloaders.scm (u-boot)[native-inputs]: Add dtc.
* gnu: u-boot: Update to 2018.05.Vagrant Cascadian2018-05-12
| | | | | | * gnu/packages/bootloaders.scm (u-boot): Update to 2018.05. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: linux-libre: Update to 4.16.8.Mark H Weaver2018-05-12
| | | | | * gnu/packages/linux.scm (%linux-libre-version): Update to 4.16.8. (%linux-libre-hash): Update hash.
* gnu: linux-libre@4.14: Update to 4.14.40.Mark H Weaver2018-05-12
| | | | | * gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.40. (%linux-libre-4.14-hash): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.99.Mark H Weaver2018-05-12
| | | | * gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.99.
* bootloader: extlinux: Fix menu support with u-boot.Vagrant Cascadian2018-05-12
| | | | | | | * gnu/bootloader/extlinux.scm (extlinux-configuration-file): Set MENU TITLE in generated extlinux.conf. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
* gnu: diamond: Update to 0.9.22.Ben Woodcroft2018-05-12
| | | | * gnu/packages/bioinformatics.scm (diamond): Update to 0.9.22.
* gnu: diffoscope: Update to 94.Ludovic Courtès2018-05-11
| | | | * gnu/packages/package-management.scm (diffoscope): Update to 94.
* gnu: eog-plugins: Update to 3.26.2.Ludovic Courtès2018-05-11
| | | | * gnu/packages/gnome.scm (eog-plugins): Update to 3.26.2.
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