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* substitute: Handle closing connections to substitute servers.handle-closing-http-connections-in-process-substitutionChristopher Baines2021-05-20
| | | | | | | | | When reusing a HTTP connection to fetch multiple nars, and the remote server signals that the connection should be closed. * guix/scripts/substitute.scm (process-substitution): Close connections to substitute servers when a Connection: close header is specified in the response.
* guix: Alter http-fetch to return the response.Christopher Baines2021-05-20
| | | | | | | | | | | | Rather than just the port and response-content-length. I'm looking at using the response headers within the substitute script to work out when to close the connection. * guix/http-client.scm (http-fetch): Return the response as the second value, rather than the response-content-length. * guix/build/download-nar.scm (download-nar): Adapt accordingly. * guix/build/download.scm (url-fetch): Adapt accordingly. * guix/scripts/substitute.scm (process-substitution): Adapt accordingly.
* gnu: nyxt: Update to 2.0.0.Pierre Neidhardt2021-05-20
| | | | | | | * gnu/packages/web-browsers.scm (nyxt): Update to 2.0.0. [arguments]: Remove useless set-version phase. [inputs]: Remove unused file-attributes. [description]: Follow upstream updates.
* gnu: sbcl-iolib: Also build iolib/os.Pierre Neidhardt2021-05-20
| | | | | * gnu/packages/lisp-xyz.scm (sbcl-iolib)[arguments]: Add iolib/os to asd-systems.
* scripts: challenge: Fix regression.Mathieu Othacehe2021-05-20
| | | | | | | | | | This is a follow-up of 3cde5231aa78aa5e31b27888cd78ee0b250a7a1c that fixes the challenge test. When dealing with uncompressed NAR, the file size is false. Propagate it to progress-reporter/file as it used to be the case. * guix/scripts/challenge.scm (call-with-nar): Accept false size.
* gnu: r-lme4: Update to 1.1-27.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/statistics.scm (r-lme4): Update to 1.1-27. [propagated-inputs]: Remove r-statmod.
* gnu: r-diptest: Update to 0.76-0.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-diptest): Update to 0.76-0.
* gnu: r-statmod: Update to 1.4.36.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-statmod): Update to 1.4.36.
* gnu: r-viridis: Update to 0.6.1.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-viridis): Update to 0.6.1.
* gnu: r-rmarkdown: Update to 2.8.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 2.8.
* gnu: r-hms: Update to 1.1.0.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-hms): Update to 1.1.0.
* gnu: r-devtools: Update to 2.4.1.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/statistics.scm (r-devtools): Update to 2.4.1. [propagated-inputs]: Remove r-jsonlite.
* gnu: r-dplyr: Update to 1.0.6.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/statistics.scm (r-dplyr): Update to 1.0.6. [propagated-inputs]: Add r-pillar.
* gnu: r-tibble: Update to 3.1.2.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-tibble): Update to 3.1.2.
* gnu: r-stringi: Update to 1.6.2.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-stringi): Update to 1.6.2.
* gnu: r-matrix: Update to 1.3-3.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/statistics.scm (r-matrix): Update to 1.3-3.
* gnu: r-pdftools: Update to 3.0.1.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-pdftools): Update to 3.0.1.
* gnu: r-textshaping: Update to 0.3.4.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-textshaping): Update to 0.3.4.
* gnu: r-seuratobject: Update to 4.0.1.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/cran.scm (r-seuratobject): Update to 4.0.1. [propagated-inputs]: Remove r-sctransform.
* gnu: r-rsample: Update to 0.1.0.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/cran.scm (r-rsample): Update to 0.1.0. [propagated-inputs]: Add r-lifecycle.
* gnu: r-clusterr: Update to 1.2.4.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-clusterr): Update to 1.2.4.
* gnu: r-rfast: Update to 2.0.3.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-rfast): Update to 2.0.3.
* gnu: r-oai: Update to 0.3.2.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/cran.scm (r-oai): Update to 0.3.2. [native-inputs]: Add r-knitr.
* gnu: r-proxyc: Update to 0.2.0.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-proxyc): Update to 0.2.0.
* gnu: r-caret: Update to 6.0-88.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-caret): Update to 6.0-88.
* gnu: r-bio3d: Update to 2.4-2.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/cran.scm (r-bio3d): Update to 2.4-2. [native-inputs]: Add r-knitr.
* gnu: r-terra: Update to 1.2-10.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-terra): Update to 1.2-10.
* gnu: r-systemfonts: Update to 1.0.2.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-systemfonts): Update to 1.0.2.
* gnu: r-ibreakdown: Update to 2.0.1.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-ibreakdown): Update to 2.0.1.
* gnu: r-ggplotify: Update to 0.0.7.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-ggplotify): Update to 0.0.7.
* gnu: r-msigdbr: Update to 7.4.1.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/cran.scm (r-msigdbr): Update to 7.4.1. [propagated-inputs]: Add r-babelgene.
* gnu: r-pegas: Update to 1.0-1.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-pegas): Update to 1.0-1.
* gnu: r-valr: Update to 0.6.3.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-valr): Update to 0.6.3.
* gnu: r-irkernel: Update to 1.2.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-irkernel): Update to 1.2.
* gnu: r-fields: Update to 12.3.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/cran.scm (r-fields): Update to 12.3. [propagated-inputs]: Add r-viridis.
* gnu: r-rnifti: Update to 1.3.1.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-rnifti): Update to 1.3.1.
* gnu: r-softimpute: Update to 1.4-1.Ricardo Wurmus2021-05-20
| | | | | * gnu/packages/cran.scm (r-softimpute): Update to 1.4-1. [native-inputs]: Add r-knitr.
* gnu: r-fmsb: Update to 0.7.1.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-fmsb): Update to 0.7.1.
* gnu: r-ouch: Update to 2.17.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-ouch): Update to 2.17.
* gnu: r-biocmanager: Update to 1.30.15.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-biocmanager): Update to 1.30.15.
* gnu: r-rcppparallel: Update to 5.1.4.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.4.
* gnu: r-performance: Update to 0.7.2.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-performance): Update to 0.7.2.
* gnu: r-sandwich: Update to 3.0-1.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-sandwich): Update to 3.0-1.
* gnu: r-flextable: Update to 0.6.6.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-flextable): Update to 0.6.6.
* gnu: r-sjmisc: Update to 2.8.7.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-sjmisc): Update to 2.8.7.
* gnu: r-sjlabelled: Update to 1.1.8.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.8.
* gnu: r-insight: Update to 0.14.0.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-insight): Update to 0.14.0.
* gnu: r-overlap: Update to 0.3.4.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-overlap): Update to 0.3.4.
* gnu: r-arules: Update to 1.6-8.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-arules): Update to 1.6-8.
* gnu: r-cubature: Update to 2.0.4.2.Ricardo Wurmus2021-05-20
| | | | * gnu/packages/cran.scm (r-cubature): Update to 2.0.4.2.
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