| Commit message (Collapse) | Author | Age |
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* gnu/packages/java.scm (icedtea7): Update to 2.6.3.
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* gnu/packages/java.scm (icedtea6): Update to 1.13.9.
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* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.48.
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* gnu/packages/parallel.scm (parallel): Update to 20151222.
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* gnu/packages/telephony.scm (sipwitch): Update to 1.9.15.
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* gnu/packages/telephony.scm (ucommon): Update to 7.0.0.
[inputs]: Add gnutls.
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* gnu/packages/admin.scm (isc-dhcp)[arguments]: Disable parallel build.
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Fixes CVE-2015-8000 and CVE-2015-8461.
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3.
[inputs]: Add 'bind-source-tarball'.
[arguments]: Use modify-phases. Add 'replace-bundled-bind' phase.
In 'post-configure' phase, avoid hard-coding version numbers of
bundled bind.
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* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P2.
[source]: Use HTTP URI instead of FTP.
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Previously a wrong-type-arg error would be raised when a file system
with a UUID (bytevector) field was encountered.
* gnu/system.scm (other-file-system-services)[device-mappings]: Check
whether FS's device is a string.
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Fixes <http://bugs.gnu.org/22176>.
Reported by Florian Paul Schmidt <mista.tapas@gmx.net>.
* gnu/system/file-systems.scm (<file-system>)[mount?]: New field.
(file-system->spec): Adjust accordingly.
* gnu/services/base.scm (file-system-dmd-service): Return the empty list
when FILE-SYSTEM has 'mount?' set to false.
(user-processes-service): Select the subset of FILE-SYSTEMS that matches
'file-system-mount?'.
* doc/guix.texi (File Systems): Document it.
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* gnu/services/base.scm (file-system->fstab-entry)
(file-systems->fstab): New procedures.
(fstab-service-type): New variable.
* gnu/services/base.scm (file-system-dmd-service): New procedure, taken
from...
(file-system-service-type): ... here.
* gnu/system.scm (essential-services): Add FSTAB-SERVICE-TYPE instance.
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* guix/build-system/r.scm (bioconductor-uri): New procedure.
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* gnu/packages/music.scm (vmpk): New variable.
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* gnu/packages/music.scm (drumstick): New variable.
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These packages should be updated together.
* gnu/packages/tls.scm (letsencrypt): Update to 0.1.1.
[source]: Use pypi-uri.
* gnu/packages/tls.scm (acme): Update to 0.1.1.
[source]: Use pypi-uri.
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* gnu/packages/video.scm (ffmpeg): Update to 2.8.4.
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* gnu/system/examples/bare-bones.tmpl (file-systems): Change device
label.
* gnu/system/examples/desktop.tmpl (file-systems): Likewise.
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* doc/guix.texi (Preparing for Installation): Point out relationship
between partition labels and the file-system configuration.
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* gnu/packages/patches/grub-CVE-2015-8370.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/grub.scm: Apply patch.
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* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
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* gnu/packages/bioinformatics.scm (r-xvector): New variable.
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* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
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* gnu/packages/bioinformatics.scm (r-iranges): New variable.
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* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
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* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
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* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
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* gnu/packages/statistics.scm (r-gridextra): New variable.
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* gnu/packages/statistics.scm (r-gtable): New variable.
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* gnu/packages/statistics.scm (r-rmarkdown): New variable.
* gnu/packages/haskell.scm: Do not select libxml2 from the xml module to
prevent circular package module imports.
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* gnu/packages/statistics.scm (r-catools): New variable.
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* gnu/packages/statistics.scm (r-bitops): New variable.
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* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
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* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable.
* gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
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* gnu/packages/maths.scm (armadillo): New variable.
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* doc/guix.texi: The CRAN importer no longer extracts information from
the HTML package description but from the package's DESCRIPTION file.
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* guix/import/cran.scm (listify): Remove empty strings from result list.
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* guix/http-client.scm (http-fetch): Add Authorization header to request
when the URI contains userinfo.
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* gnu/packages/version-control.scm (libgit2): New variable.
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* gnu/packages/bioinformatics.scm (mafft): Update to 7.267.
[arguments]: Don't include mafft-homologs manpage.
[inputs]: Add gawk and grep.
[propagated-inputs]: Add coreutils.
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This provides the necessary terminal capability data, which are required
by ncurses-based applications.
* gnu/packages/xdisorg.scm (rxvt-unicode)[native-inputs]: Add ncurses.
[arguments]: Set the destination of the terminfo files.
[native-search-path]: New field. Make them automatically available to
the user.
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* gnu/packages/mail.scm (msmtp): Update to 1.6.3.
[inputs]: Add libsecret.
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* gnu/packages/mail.scm (claws-mail): Update to 3.13.1.
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* gnu/packages/python.scm (python-cython): Update to 0.23.4.
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This version fixes CVE-2015-7551.
* gnu/packages/ruby.scm (ruby): Update to 2.2.4.
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Reported by Leo Famulari.
* guix/scripts/lint.scm (package-name->cpe-name): Add "grub".
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These procedures are now redundant with those in (guix graph) and are no
longer used since commit a51cbecb.
* gnu/packages.scm (vhash-refq, package-dependencies)
(package-direct-dependents, package-transitive-dependents)
(package-covering-dependents): Remove.
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Fixes <http://bugs.gnu.org/22073>.
Reported by Federico Beffa <beffa@ieee.org>.
* guix/profiles.scm (package->manifest-entry): Use
'package-transitive-native-search-paths' when computing
'search-paths' field.
* tests/profiles.scm ("package->manifest-entry, search paths"): New test.
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* guix/packages.scm (package-transitive-native-search-paths): New
procedure.
* tests/packages.scm ("package-transitive-native-search-paths"): New
test.
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* gnu/packages/mail.scm (offlineimap): Update to 6.6.0.
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