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* Merge branch 'master' into core-updatesMark H Weaver2016-10-27
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| * gnu: Add r-mutationalpatterns.Roel Janssen2016-10-27
| | | | | | | | * gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
| * gnu: jasper: Updat eto 1.900.16.Efraim Flashner2016-10-27
| | | | | | | | * gnu/packages/image.scm (japer): Update to 1.900.16.
| * gnu: windowmaker: Add support for more image formats.Kei Kebreau2016-10-27
| | | | | | | | | | * gnu/packages/gnustep.scm (windowmaker)[inputs]: Add giflib, libpng, and libtiff.
| * gnu: r: Use uname from GuixRoel Janssen2016-10-27
| | | | | | | | * gnu/packages/statistics.scm (r): Use uname from Guix.
| * gnu: python-urllib3: Update to 1.18.1.Marius Bakke2016-10-27
| | | | | | | | | | * gnu/packages/python.scm (python-urllib3): Update to 1.18.1. [home-page]: Use https URL.
| * tests: Test installation with a RAID root partition.Ludovic Courtès2016-10-27
| | | | | | | | | | * gnu/tests/install.scm (%raid-root-os, %raid-root-os-source) (%raid-root-installation-script, %test-raid-root-os): New variables.
| * file-systems: 'disk-partitions' detected partitions from mapped devices.Ludovic Courtès2016-10-27
| | | | | | | | | | | | | | | | | | | | Previously, partitions of mdadm- or cryptsetup-produced block devices would not be returned by 'disk-partitions'. * gnu/build/file-systems.scm (disk-partitions)[last-character]: New procedure. [partition?]: Add 'name' parameter and rewrite. Adjust caller. * gnu/build/file-systems.scm (ENOENT-safe): Silently ignore ENOMEDIUM.
| * tests: Add #:memory-size parameter for the command to run the installed OS.Ludovic Courtès2016-10-27
| | | | | | | | | | * gnu/tests/install.scm (qemu-command/writable-image): Add #:memory-size parameter and honor it.
| * mapped-devices: Use 'mdadm-static' in 'raid-device-mapping'.Ludovic Courtès2016-10-27
| | | | | | | | | | * gnu/system/mapped-devices.scm (open-raid-device, close-raid-device): Use MDADM-STATIC instead of MDADM. Use 'file-append'.
| * gnu: Add mdadm-static.Ludovic Courtès2016-10-27
| | | | | | | | * gnu/packages/linux.scm (mdadm-static): New variable.
| * gnu: libmikmod: Update to 3.3.10.Efraim Flashner2016-10-27
| | | | | | | | * gnu/packages/sdl.scm (libmikmod): Update to 3.3.10.
| * gnu: sdl2: Update to 2.0.5.Efraim Flashner2016-10-27
| | | | | | | | * gnu/packages/sdl.scm (sdl2): Update to 2.0.5.
| * gnu: Use 'https' for libsdl urls.Efraim Flashner2016-10-27
| | | | | | | | | | | | * gnu/packages/sdl.scm (sdl, sdl2, sdl-image, sdl-mixer, sdl-net) (sdl-ttf, sdl2-image, sdl2-ttf)[source]: Use https. [home-page]: Use https.
| * gnu: mcelog: Update to 144.Tobias Geerinckx-Rice2016-10-27
| | | | | | | | * gnu/packages/linux.scm (mcelog): Update to 144.
| * gnu: btrfs-progs: Update to 4.8.2.Tobias Geerinckx-Rice2016-10-27
| | | | | | | | * gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
| * gnu: gnupg: Add support for pcsc-lite.Mike Gerwitz2016-10-27
| | | | | | | | | | | | | | | | * gnu/packages/gnupg.scm (gnupg)[inputs]: Add pcsc-lite. [arguments]: Rename phase 'patch-config-files' to 'patch-paths'. Patch `scd/scdaemon.c' with absolute path of libpcsclite.so. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: Add pcsc-lite.Mike Gerwitz2016-10-27
| | | | | | | | | | | | * gnu/packages/security-token.scm (pcsc-lite): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
| * gnu: Add dbacl.ng02016-10-27
| | | | | | | | | | | | * gnu/packages/textutils.scm (dbacl): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: valgrind: Use 'modify-phases' syntax.Efraim Flashner2016-10-27
| | | | | | | | | | * gnu/packages/valgrind.scm (valgrind)[arguments]: Use 'modify-phases' syntax.
| * gnu: valgrind: Update to 3.12.0.Efraim Flashner2016-10-27
| | | | | | | | * gnu/packages/valgrind.scm (valgrind): Update to 3.12.0.
| * gnu: python-pathlib2: Add comment.Hartmut Goebel2016-10-27
| | | | | | | | | | | | As suggested by Efraim Flashner. * gnu/packages/python.scm (python-pathlib2): Add comment.
| * gnu: shotwell: Update to 0.25.0.Leo Famulari2016-10-26
| | | | | | | | | | * gnu/packages/gnome.scm (shotwell): Update to 0.25.0. [inputs]: Add gcr.
| * gnu: vdirsyncer: Update to 0.14.0.Leo Famulari2016-10-26
| | | | | | | | * gnu/packages/dav.scm (vdirsyncer): Update to 0.14.0.
| * tests: Test installation with store on a separate partition.Ludovic Courtès2016-10-27
| | | | | | | | | | | | | | | | This is a followup to 0f65f54ebd76324653fd5506a7dab42ee44d9255. * gnu/tests/install.scm (%separate-store-os, %separate-store-os-source) (%separate-store-installation-script, %test-separate-store-os): New variables.
| * tests: Use #:fallback? #t when building system tests.Ludovic Courtès2016-10-27
| | | | | | | | | | * build-aux/run-system-tests.scm (run-system-tests): Pass #:fallback? #t to 'set-build-options*'.
| * tests: Adjust pypi test to recent importer change.Ludovic Courtès2016-10-27
| | | | | | | | | | | | | | | | This is a followup to b5c347ad3d83ee580c111bd14c80b469b0dcb294. * tests/pypi.scm ("pypi->guix-package"): Expect 'propagated-inputs', not 'inputs'. ("pypi->guix-package, wheels"): Likewise.
| * tests: Skip 'pivot-root' test on Linux > 4.7.5.Ludovic Courtès2016-10-27
| | | | | | | | | | * tests/syscalls.scm ("pivot-root"): Skip when 'uname' returns a 'utsname:release' > 4.7.5.
* | gnu: python-parse: Use 'modify-phases' syntax.Efraim Flashner2016-10-27
| | | | | | | | | | * gnu/packages/python.scm (python-parse)[arguments]: Use 'modify-phases' syntax.
* | gnu: python-parse: Fix failing test.Efraim Flashner2016-10-27
| | | | | | | | | | | | * gnu/packages/python.scm (python-parse)[origin]: Add patch. * gnu/packages/patches/python-parse-too-many-fields.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
* | gnu: python-pytest-django: Add missing test input.Efraim Flashner2016-10-27
| | | | | | | | | | * gnu/packages/django.scm (python-pytest-django)[native-inputs]: Add python-django.
* | gnu: python-django-filter: Add inputs for tests.Efraim Flashner2016-10-27
| | | | | | | | | | * gnu/packages/django.scm (python-django-filter)[native-inputs]: Add python-django, python-mock.
* | gnu: python-wtforms: Skip optional tests.Efraim Flashner2016-10-27
| | | | | | | | | | * gnu/packages/python.scm (python-wtforms)[arguments]: Add a phase preventing tests from failing when optional tests aren't run.
* | gnu: lightning: Add missing input.Efraim Flashner2016-10-27
| | | | | | | | * gnu/packages/assembly.scm (lightning)[native-inputs]: Add zlib.
* | gnu: gxmessage: Add missing input.Efraim Flashner2016-10-27
| | | | | | | | * gnu/packages/gxmessage.scm (gxmessage)[native-inputs]: Add gtk+3-bin.
* | gnu: btrfs-progs: Update to 4.8.2.Leo Famulari2016-10-27
| | | | | | | | * gnu/packages/linux.scm (btrfs-progs): Update to 4.8.2.
* | gnu: blender: Update to 2.78a.Leo Famulari2016-10-27
| | | | | | | | * gnu/packages/graphics.scm (blender): Update to 2.78a.
* | gnu: python-s3transfer: Run the tests.Leo Famulari2016-10-26
| | | | | | | | | | | | * gnu/packages/python.scm (python-s3transfer, python2-s3transfer)[arguments]: Use python-nose to run the tests. [native-inputs]: Add python-mock and python-nose.
* | Merge branch 'master' into core-updatesLeo Famulari2016-10-26
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| * gnu: Add lci.ng02016-10-26
| | | | | | | | | | | | | | * gnu/packages/lolcode.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| * gnu: Add autossh.Christopher Allan Webber2016-10-26
| | | | | | | | * gnu/packages/ssh.scm (autossh): New variable.
| * gnu: r: Update to 3.3.1.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r): Update to 3.3.1.
| * gnu: r-matrixstats: Update to 0.51.0.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-matrixstats): Update to 0.51.0.
| * gnu: r-r-utils: Update to 2.4.0.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-r-utils): Update to 2.4.0.
| * gnu: r-irlba: Update to 2.1.2.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-irlba): Update to 2.1.2.
| * gnu: r-codetools: Update to 0.2-15.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-codetools): Update to 0.2-15.
| * gnu: r-snow: Update to 0.4-2.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-snow): Update to 0.4-2.
| * gnu: r-backports: Update to 1.0.4.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-backports): Update to 1.0.4.
| * gnu: r-foreign: Update to 0.8-67.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-foreign): Update to 0.8-67.
| * gnu: r-cluster: Update to 2.0.5.Ricardo Wurmus2016-10-26
| | | | | | | | * gnu/packages/statistics.scm (r-cluster): Update to 2.0.5.
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