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* gnu: Add java-plexus-cli.Julien Lepiller2018-06-16
| | | | * gnu/packages/java.scm (java-plexus-cli): New variable.
* gnu: Add java-eclipse-jetty-webapp-9.2.Julien Lepiller2018-06-16
| | | | * gnu/packages/web.scm (java-eclipse-jetty-webapp-9.2): New variable.
* gnu: Add java-eclipse-jetty-webapp.Julien Lepiller2018-06-16
| | | | * gnu/packages/web.scm (java-eclipse-jetty-webapp): New variable.
* gnu. Add java-eclipse-jetty-xml-9.2.Julien Lepiller2018-06-16
| | | | * gnu/packages/web.scm (java-eclipse-jetty-xml-9.2): New variable.
* gnu: Add java-eclipse-jetty-xml.Julien Lepiller2018-06-16
| | | | * gnu/packages/web.scm (java-eclipse-jetty-xml): New variable.
* gnu: java-eclipse-jetty-security-9.2: Ignore test error.Julien Lepiller2018-06-16
| | | | | * gnu/packages/web.scm (java-eclipse-jetty-security-9.2)[arguments]: Ignore one failing test.
* gnu: pigx-chipseq: Update to 0.0.16.Ricardo Wurmus2018-06-16
| | | | * gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.16.
* gnu: BIND: Fix CVE-2018-5738.Leo Famulari2018-06-15
| | | | | | * gnu/packages/patches/bind-CVE-2018-5738.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dns.scm (isc-bind)[source]: Use it.
* gnu: grub: Fix build on i686.Mark H Weaver2018-06-15
| | | | | | | | | Fixes <https://bugs.gnu.org/31380>. * gnu/packages/bootloaders.scm (grub)[native-inputs]: Add "ld-wrapper" and "binutils". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* system: Add os-with-u-boot.Danny Milosavljevic2018-06-15
| | | | | | | * gnu/system/install.scm (os-with-u-boot): New procedure. * gnu/packages/bootloaders.scm (make-u-boot-package): Export. * doc/guix.texi (Building the Installation Image for ARM Boards): New subsection.
* gnu: Add shadowsocks.fis2018-06-15
| | | | | | * gnu/packages/networking.scm (shadowsocks): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* hydra: Make sure we add an absolute file name to the load path.Ludovic Courtès2018-06-15
| | | | | | | | | | | | | | | | | | Previously, under Cuirass, we'd add "build-aux/cuirass/../hydra/../..". But then, commit c45477d2a1a651485feede20fe0f3d15aec48b39 added this in (gnu system vm): (local-file (search-path %load-path "guix/store/schema.sql")) Since 'search-path' would not return an absolute file name, 'local-file' would try to resolve that relative to "gnu/system", leading to: ERROR: In procedure force: In procedure canonicalize-path: No such file or directory: "/gnu/store/…-guix-ce573b1/gnu/system/build-aux/cuirass/../hydra/../../guix/store/schema.sql * build-aux/hydra/gnu-system.scm <top level>: Canonicalize DIR before adding it to %LOAD-PATH.
* offload: Fix error message in 'guix offload test'.Ludovic Courtès2018-06-15
| | | | | | | | Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com> in <https://bugs.gnu.org/31824>. * guix/scripts/offload.scm (assert-node-has-guix): Fix typo in failure message; add missing argument.
* gnu: cpuid: Update to 20180519.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/linux.scm (cpuid): Update to 20180519.
* gnu: light: Return #t from phase.Tobias Geerinckx-Rice2018-06-15
| | | | | * gnu/packages/linux.scm (light)[arguments]: End ‘patch-makefile’ phase with #t.
* gnu: light: Update to 1.1.Tobias Geerinckx-Rice2018-06-15
| | | | | * gnu/packages/linux.scm (light): Update to 1.1. [source]: Switch to GIT-FETCH.
* gnu: f2fs-tools: Update to 1.10.0.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/linux.scm (f2fs-tools): Update to 1.10.0.
* gnu: spice-protocol: Update to 0.12.14.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/spice.scm (spice-protocol): Update to 0.12.14.
* gnu: python-pyrfc3339: Update to 1.1.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/time.scm (python-pyrfc3339): Update to 1.1.
* gnu: gource: Update to 0.49.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/version-control.scm (gource): Update to 0.49.
* gnu: perl-xml-libxml-simple: Update to 0.99.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/xml.scm (perl-xml-libxml-simple): Update to 0.99.
* gnu: fcitx-configtool: Update to 0.4.10.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/fcitx.scm (fcitx-configtool): Update to 0.4.10.
* gnu: fcitx: Update to 4.2.9.6.Tobias Geerinckx-Rice2018-06-15
| | | | | * gnu/packages/fcitx.scm (fcitx): Update to 4.2.9.6. [native-inputs]: Add extra-cmake-modules.
* gnu: fcitx: Use HTTPS home page.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/fcitx.scm (fcitx)[home-page]: Use HTTPS.
* gnu: perl-xml-xpath: Update to 1.42.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/xml.scm (perl-xml-xpath): Update to 1.42.
* gnu: perl-xml-xpath: Propagate inputs.Tobias Geerinckx-Rice2018-06-15
| | | | | * gnu/packages/xml.scm (perl-xml-xpath)[inputs]: Rename this... [propagated-inputs]: ...to this.
* gnu: perl-xml-atom: Propagate inputs.Tobias Geerinckx-Rice2018-06-15
| | | | | | * gnu/packages/xml.scm (perl-xml-atom)[inputs]: Rename to... [propagated-inputs]: ...this, and... [native-inputs]: ...remove duplicate packages from here.
* gnu: nickle: Update to 2.81.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/nickle.scm (nickle): Update to 2.81.
* gnu: r-cubature: Update to 1.4.Tobias Geerinckx-Rice2018-06-15
| | | | * gnu/packages/cran.scm (r-cubature): Update to 1.4.
* gnu: neofetch: Update to 4.0.2.Rutger Helling2018-06-15
| | | | * gnu/packages/admin.scm (neofetch): Update to 4.0.2.
* gnu: Add r-genomicinteractions.Ricardo Wurmus2018-06-15
| | | | * gnu/packages/bioconductor.scm (r-genomicinteractions): New variable.
* gnu: Add r-interactionset.Ricardo Wurmus2018-06-15
| | | | * gnu/packages/bioconductor.scm (r-interactionset): New variable.
* gnu: innoextract: Update to 1.7.Rutger Helling2018-06-15
| | | | * gnu/packages/compression.scm (innoextract): Update to 1.7.
* gnu: Add r-riboseqr.Ricardo Wurmus2018-06-15
| | | | * gnu/packages/bioconductor.scm (r-riboseqr): New variable.
* gnu: Add r-riboprofiling.Ricardo Wurmus2018-06-15
| | | | * gnu/packages/bioconductor.scm (r-riboprofiling): New variable.
* gnu: Add r-chipcomp.Ricardo Wurmus2018-06-15
| | | | * gnu/packages/bioconductor.scm (r-chipcomp): New variable.
* gnu: Add r-bsgenome-mmusculus-ucsc-mm9-masked.Ricardo Wurmus2018-06-15
| | | | | * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked): New variable.
* gnu: Add r-bsgenome-hsapiens-ucsc-hg19-masked.Ricardo Wurmus2018-06-15
| | | | | * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): New variable.
* gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked.Ricardo Wurmus2018-06-15
| | | | | * gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked): New variable.
* gnu: Add r-bayseq.Ricardo Wurmus2018-06-15
| | | | * gnu/packages/bioconductor.scm (r-bayseq): New variable.
* gnu: certbot, python-acme: Update to 0.25.1.Leo Famulari2018-06-14
| | | | | | | * gnu/packages/tls.scm (certbot): Update 0.25.1. (python-acme): Update to 0.25.1. [native-inputs]: Add python-pytest. [propagated-inputs]: Add python-requests-toolbelt.
* gnu: Go 1.10: Update to 1.10.3.Leo Famulari2018-06-14
| | | | * gnu/packages/golang.scm (go-1.10): Update to 1.10.3.
* gnu: Go 1.9: Update to 1.9.7.Leo Famulari2018-06-14
| | | | * gnu/packages/golang.scm (go-1.9): Update to 1.9.7.
* linux-initrd: Module check correctly handles hyphen vs. underscore.Ludovic Courtès2018-06-14
| | | | | | | | | | Fixes <https://bugs.gnu.org/31714>. Reported by Vagrant Cascadian <vagrant@debian.org> and Florian Pelz <pelzflorian@pelzflorian.de>. * gnu/system/mapped-devices.scm (check-device-initrd-modules): Pass LINUX-MODULES through 'normalize-module-name'. * gnu/build/linux-modules.scm (normalize-module-name): Export.
* offload: Gracefully handle invalid results from 'machines.scm'.Ludovic Courtès2018-06-14
| | | | | * guix/scripts/offload.scm (build-machines): Check the result of FILE. Ignore it if it's not a list of <build-machine>.
* gnu: emacs-racket-mode: Update and bug fix.Konrad Hinsen2018-06-14
| | | | | | | | | * gnu/packages/emacs.scm (emacs-racket-mode): Update and bug fix. - Update to the current commit - Bug fix: include Racket files in addition to Emacs Lisp files Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add vowpal-wabbit.Fis Trivial2018-06-14
| | | | | | * gnu/packages/machine-learning.scm (vowpal-wabbit): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add lightgbm.Fis Trivial2018-06-14
| | | | | | * gnu/packages/machine-learning.scm (lightgbm): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* self: Add 'guix-daemon' to the result.Ludovic Courtès2018-06-14
| | | | | | * gnu/packages/package-management.scm (guix-daemon): New variable. * guix/self.scm (whole-package): Add #:daemon and honor it. (compiled-guix): Pass #:daemon to 'whole-package'.
* gnu: libressl: Update to 2.7.4 [fixes CVE-2018-{0495,0732}].Gábor Boskovits2018-06-14
| | | | | | * gnu/packages/tls.scm (libressl): Update to 2.7.4. Signed-off-by: Leo Famulari <leo@famulari.name>
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