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* gnu: python2-warpedlmm: Use PYPI-URI.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/bioinformatics.scm (python2-warpedlmm)[source]: Use PYPI-URI.
* gnu: attic: Use PYPI-URI.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/backup.scm (attic)[source]: Use PYPI-URI.
* gnu: graphios: Use PYPI-URI.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/admin.scm (graphios)[source]: Use PYPI-URI.
* gnu: python-sqlalchemy: Use PYPI-URI.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
* gnu: python-pyaudio: Use PYPI-URI.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/audio.scm (python-pyaudio)[source]: Use PYPI-URI.
* gnu: femtolisp: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/scheme.scm (femtolisp)[arguments]: Remove "bootstrap" phase; use INVOKE and return #T unconditionally.
* gnu: linkchecker: Fix most test failures.Christopher Baines2019-01-25
| | | | | | | | | | | | | | | | Add a patch to skip more tests that require the network. Along with some other changes, this gets all but of one of the tests passing. The remaining test is broken due to a problem with the Python package in Guix, which is fixed by [1] which is currently on the core-updates branch. This patch doesn't work on core-updates due to python2-miniboa not being present. 1: d453b0e11d3f001a8160a7d126fdbf40e45d5042 * gnu/packages/python.scm (linkchecker)[source]: Add patch. [native-inputs]: Add more inputs required for the tests. [arguments]: Enable the tests, move the 'check phase after 'install. Test using the installed software, and use py.test.
* gnu: dealii-openmpi: Setup MPI for tests.Eric Bavier2019-01-25
| | | | * gnu/packages/maths.scm (dealii-openmpi)[arguments]: Add 'mpi-setup' phase.
* superlu-dist: Upgrade to 6.1.0.Eric Bavier2019-01-25
| | | | | | | | | | | | | | | * gnu/packages/patches/superlu-dist-awpm-grid.patch: New file. * gnu/packages/maths.scm (superlu-dist)[source]: Upgrade to 6.0.0. Remove extraneous 'use-modules' in snippet. [build-system]: Change to cmake-build-system. [propagated-inputs]: Replace pt-scotch with pt-scotch32 to match integer sizes. Add "parmetis" input, from pt-scotch32. Move lapack to ... [inputs]: ...here. Add openblas and combinatorial-blas. [arguments]: Replace 'configure' phase with #:configure-flags. Add 'set-c++-standard' and 'omp-setup' phases. Remove 'create-install-directories, 'check', and 'install' phases, which are now handled by cmake. * gnu/local.mk (dist_patch_DATA): Add patch.
* scotch: Upgrade to 6.0.6.Eric Bavier2019-01-25
| | | | | | | | | | | | | * gnu/packages/maths.scm (scotch): Upgrade to 6.0.6. [source]: Remove patches that have been fixed upstream. [arguments]: Add 'install-metis' phase. [outputs]: New field. (pt-scotch, pt-scotch32)[arguments]: Add 'mpi-setup' phase. Use 'invoke'. * gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch, gnu/packages/patches/scotch-test-threading.patch: Delete files. * gnu/packages/patches/scotch-integer-declarations.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust as necessary.
* gnu: Add Combinatorial BLAS.Eric Bavier2019-01-25
| | | | | | | * gnu/packages/maths.scm (combinatorial-blas): New variable. * gnu/packages/patches/combinatorial-blas-awpm.patch, gnu/packages/patches/combinatorial-blas-io-fix.patch: New files * gnu/local.mk(dist_patch_DATA): Add them.
* linux-modules: module-soft-dependencies: Remove colon from section names.Danny Milosavljevic2019-01-25
| | | | | | | Follow-up to 1a5f46621b44aa1458ad7acd4eca5fe1d4574f92. * gnu/build/linux-modules.scm (module-soft-dependencies): Remove colon from section names.
* linux-modules: Add module-soft-dependencies.Danny Milosavljevic2019-01-25
| | | | | * gnu/build/linux-modules.scm (not-softdep-whitespace): New variable. (module-soft-dependencies): New procedure.
* gnu: Add stepmania.Nicolas Goaziou2019-01-25
| | | | | * gnu/packages/games.scm (stepmania): * gnu/packages/video.scm (ffmpeg-for-stepmania): New variables.
* gnu: kcoreaddons: Fix broken test.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/kde-frameworks.scm (kcoreaddons)[arguments]: Add build phase "fix-broken-test".
* gnu: infiniband-diags: Remove custom bootstrap phase.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/fabric-management.scm (infiniband-diags)[arguments]: Remove "autotools" phase.
* gnu: gpgme: Update to 1.12.0.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/gnupg.scm (gpgme): Update to 1.12.0.
* gnu: gpgme: Add patch to fix qgpgme tests.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/gnupg.scm (gpgme)[source]: Add upstream patch.
* gnu: pcb-rnd: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/engineering.scm (pcb-rnd)[arguments]: Use INVOKE.
* gnu: proplib: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/embedded.scm (proplib)[arguments]: Use INVOKE.
* gnu: jimtcl: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/embedded.scm (jimtcl)[arguments]: Use INVOKE.
* gnu: greenisland: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/display-managers.scm (greenisland)[arguments]: Use INVOKE in check phase.
* gnu: assword: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/password-utils.scm (assword)[arguments]: Use INVOKE.
* gnu: python-oslosphinx: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/openstack.scm (python-oslosphinx)[arguments]: Use INVOKE.
* gnu: python-reno: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/openstack.scm (python-reno)[arguments]: Use INVOKE. [native-inputs]: Replace "git" with "git-minimal".
* gnu: Add ghc-libmpd.Gabriel Hondet2019-01-25
| | | | | | * gnu/packages/haskell.scm (ghc-libmpd): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* weather: Add '--coverage'.Ludovic Courtès2019-01-25
| | | | | | | | | * guix/scripts/weather.scm (show-help, %options): Add '--coverage'. (package-partition-boundary, package->output-mapping) (substitute-oracle, report-package-coverage-per-system) (report-package-coverage): New procedures. (guix-weather): Honor '--coverage'. * doc/guix.texi (Invoking guix weather): Document it.
* refresh: Better account for private and generated packages.Ludovic Courtès2019-01-25
| | | | | | | | | | | | | | | | | | | Until now, private and generated packages (e.g., those created by 'texlive-union') we missing from the list passed to 'node-back-edges', which would lead to inaccurate dependent counts. Previously we'd get: $ guix refresh -l texlive-fonts-cm Building the following 80 packages would ensure 116 dependent packages are rebuilt: … Now we have: $ Building the following 240 packages would ensure 597 dependent packages are rebuilt: … * guix/scripts/refresh.scm (list-dependents): Call 'package-closure'.
* refresh: Fix format string that would lead '-l' to print incorrect numbers.Ludovic Courtès2019-01-25
| | | | | | | | | | | | | | | | The skip "~*" argument was misplaced, leading the number of dependents to be skipped (instead of the number of covering packages.) Thus, we'd get: $ guix refresh -l ocaml4.02-ppx-deriving@4.1 Building the following package would ensure 1 dependent packages are rebuilt: bap@1.3.0 instead of: Building the following package would ensure 26 dependent packages are rebuilt: bap@1.3.0 * guix/scripts/refresh.scm (list-dependents): Move "~*" in the right place, to skip (length covering) rather than (length dependents).
* weather: Ignore deprecated packages but not hidden packages.Ludovic Courtès2019-01-25
| | | | | * guix/scripts/weather.scm (all-packages): Pass #:select? to 'fold-packages'.
* packages: Add 'package-closure'.Ludovic Courtès2019-01-25
| | | | | * guix/packages.scm (package-closure): New procedure. * tests/packages.scm ("package-closure"): New test.
* gnu: python-pyopenssl: Update to 19.0.0.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/python-crypto.scm (python-pyopenssl): Update to 19.0.0. [arguments]: Use INVOKE.
* gnu: python2-pyqt-4: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/qt.scm (python2-pyqt-4)[arguments]: Use INVOKE.
* gnu: qwt: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/qt.scm (qwt)[arguments]: Use INVOKE.
* gnu: ldb: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/samba.scm (ldb)[arguments]: Use INVOKE.
* gnu: tevent: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/samba.scm (tevent)[arguments]: Use INVOKE.
* gnu: talloc/static: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/samba.scm (talloc/static)[arguments]: Use INVOKE in the build phase.
* gnu: tre: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/regex.scm (tre)[arguments]: Use INVOKE.
* gnu: python-rdflib: Use PYPI-URI.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/rdf.scm (python-rdflib)[source]: Use PYPI-URI. [arguments]: Use INVOKE in commented build phase.
* gnu: ocaml-utop: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/ocaml.scm (ocaml-utop)[arguments]: Use INVOKE.
* gnu: ocaml-zed: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/ocaml.scm (ocaml-zed)[arguments]: Use INVOKE in build phases.
* gnu: ocaml-zarith: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/ocaml.scm (ocaml-zarith)[arguments]: Use INVOKE.
* gnu: camlp4-4.02: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/ocaml.scm (camlp4-4.02)[arguments]: Use INVOKE in build phases.
* gnu: ocaml-4.01: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/ocaml.scm (ocaml-4.01)[arguments]: Use INVOKE in build phases.
* gnu: ocaml-4.02: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/ocaml.scm (ocaml-4.02)[arguments]: Use INVOKE in build phases.
* gnu: tomsfastmath: Use INVOKE.Ricardo Wurmus2019-01-25
| | | | | * gnu/packages/multiprecision.scm (tomsfastmath)[arguments]: Use INVOKE in "check" phase.
* gnu: freetalk: Remove custom bootstrap phase.Ricardo Wurmus2019-01-25
| | | | * gnu/packages/messaging.scm (freetalk)[arguments]: Remove "autogen" phase.
* gnu: perl-net-psyc: Update to 1.3.Ricardo Wurmus2019-01-25
| | | | | | * gnu/packages/messaging.scm (perl-net-psyc): Update to 1.3. [native-inputs]: Add unzip. [arguments]: Use INVOKE in build phase.
* gnu: dino: Update to 0.0-4.8e14ac6.Ricardo Wurmus2019-01-25
| | | | | | * gnu/packages/messaging.scm (dino): Update to 0.0-4.8e14ac6. [arguments]: Use INVOKE in build phases. [inputs]: Add qrencode; replace sqlite with sqlite-with-column-metadata.
* gnu: bitlbee-discord: Do not run autogen.sh in custom autogen phase.Ricardo Wurmus2019-01-25
| | | | | | * gnu/packages/messaging.scm (bitlbee-discord)[arguments]: Rename "autogen" phase to "patch-autogen"; don't invoke "autogen.sh" script as it is invoked in the "bootstrap" phase; return #T from "patch-autogen" phase.
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