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* gnu: Remove "r-repository" property.Ricardo Wurmus2016-03-24
| | | | | | * gnu/packages/bioinformatics.scm (r-biocgenerics, r-s4vectors, r-iranges, r-genomeinfodb, r-xvector, r-genomicranges)[properties]: Remove "r-repository" property.
* gnu: pari-gp: Syntactic changes.Andreas Enge2016-03-24
| | | | * gnu/packages/algebra.scm (pari-gp)[arguments]: Use modify-phases syntax.
* services: xorg: Fix ~/.xsession handling.Ludovic Courtès2016-03-24
| | | | | | | Fixes a regression introduced in c510cbb4ecb270ca3edf282c6769aa2bfb144822. * gnu/services/xorg.scm (xinitrc)[builder]: Add missing 'apply' when XSESSION-FILE exists.
* gnu: modem-manager: Update to 1.4.14.Efraim Flashner2016-03-24
| | | | * gnu/packages/freedesktop.scm (modem-manager): Update to 1.4.14.
* gnu: webkitgtk: Update to 2.12.0.Mark H Weaver2016-03-23
| | | | * gnu/packages/webkit.scm (webkitgtk): Update to 2.12.0.
* gnu: shepherd: Update to 0.3.1.Ludovic Courtès2016-03-23
| | | | * gnu/packages/admin.scm (shepherd): Update to 0.3.1.
* guix build: '--with-source' correctly matches versioned file names.Ludovic Courtès2016-03-23
| | | | | | | | * guix/scripts/build.scm: Use the right 'package-name->name+version' procedure. Fixes a regression introduced in 1b846da8c372bee78851439fd9e72b2499115e5a. * tests/scripts-build.scm ("options->transformation, with-source, with version"): New test.
* gnu: libressl: Update to 2.3.3.Nils Gillmann2016-03-23
| | | | | | * gnu/packages/tls.scm (libressl): Update to 2.3.3. Signed-off-by: Leo Famulari <leo@famulari.name>
* emacs: Use space to separate package name and version in heading.Alex Kost2016-03-23
| | | | | | | | Reported by Ludovic Courtès <ludo@gnu.org>. * emacs/guix-ui-package.el (guix-package-name): Check 'spec' property. (guix-package-info-insert-heading): Use "name version" for button label, write name specification to 'spec' property.
* emacs: Fix converting scheme into elisp expression.Alex Kost2016-03-23
| | | | | * emacs/guix-geiser.el (guix-geiser-eval-read): Replace #f/#t with nil/t only when they follow "(" or " ".
* gnu: Add AIDE.Ricardo Wurmus2016-03-23
| | | | * gnu/packages/admin.scm (aide): New variable.
* gnu: icecast: Update to 2.4.3 [fixes CVE-2015-3026].Leo Famulari2016-03-22
| | | | * gnu/packages/xiph.scm (icecast): Update to 2.4.3.
* services: postgresql: Use syslog.Ludovic Courtès2016-03-23
| | | | | | | | | Fixes <http://bugs.gnu.org/23064>. Reported by Danny Milosavljevic <dannym@scratchpost.org>. * gnu/services/databases.scm (%default-postgres-config): Add 'log_destination' line. (postgresql-shepherd-service): Add requirement on 'syslogd'.
* doc: Add "lightweight desktop" OS config example.Ludovic Courtès2016-03-23
| | | | | | | | | | | | * gnu/system/examples/desktop.tmpl (packages): Remove XFCE and RATPOISON. (services): Add 'gnome-desktop-service' and 'xfce-desktop-service'. * gnu/system/examples/lightweight-desktop.tmpl: New file. * Makefile.am (EXAMPLES): Add it. * doc.am (OS_CONFIG_EXAMPLES_TEXI): Add doc/os-config-lightweight-desktop.texi. * gnu/system/install.scm (/etc/configuration-files)[directory]: Add lightweight-desktop.tmpl.
* derivations: Raise an error when a module file is not found.Ludovic Courtès2016-03-23
| | | | | | | | | | | | Suggested by Jookia. * guix/derivations.scm (&file-search-error): New error condition. (search-path*): Raise it when 'search-path' returns #f. * guix/gexp.scm (search-path*): Remove. * guix/ui.scm (call-with-error-handling): Add case for 'file-search-error?'. * tests/derivations.scm ("build-expression->derivation and invalid module name"): New test.
* derivations: Add 'module->source-file-name'.Ludovic Courtès2016-03-23
| | | | | | * guix/derivations.scm (module->source-file-name): New procedure. (%imported-modules): Use it. * guix/gexp.scm (imported-modules): Likewise.
* substitute: Gracefully handle TLS errors.Ludovic Courtès2016-03-23
| | | | | * guix/scripts/substitute.scm (with-networking): Use 'match-lambda*' and add case for 'gnutls-error'.
* import: cran: Accept single URL in addition to single URL.Ricardo Wurmus2016-03-22
| | | | | * guix/import/cran.scm (package->upstream-name): Match single URL in addition to list of URLs.
* gnu: webkitgtk-2.4: Update to 2.4.10 [fixes many security flaws].Mark H Weaver2016-03-22
| | | | | | | | | | | | | | Fixes CVE-2014-1748, CVE-2015-1071, CVE-2015-1076, CVE-2015-1081, CVE-2015-1083, CVE-2015-1120, CVE-2015-1122, CVE-2015-1127, CVE-2015-1153, CVE-2015-1155, CVE-2015-3658, CVE-2015-3659, CVE-2015-3727, CVE-2015-3731, CVE-2015-3741, CVE-2015-3743, CVE-2015-3745, CVE-2015-3747, CVE-2015-3748, CVE-2015-3749, CVE-2015-3752, CVE-2015-5788, CVE-2015-5794, CVE-2015-5801, CVE-2015-5809, CVE-2015-5822, and CVE-2015-5928. * gnu/packages/patches/webkitgtk-2.4-sql-init-string.patch: Delete file. * gnu-system.am (dist_patch_DATA): Remove it. * gnu/packages/webkit.scm (webkitgtk-2.4): Update to 2.4.10. [source]: Remove patch.
* gnu: linux-libre-4.1: Update to 4.1.20.Mark H Weaver2016-03-21
| | | | * gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.20.
* Merge branch 'security-updates'Ludovic Courtès2016-03-22
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| * Merge branch 'master' into security-updatesMark H Weaver2016-03-15
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| * \ Merge branch 'master' into security-updatesMark H Weaver2016-03-12
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| * | | gnu: dbus: Incorporate "dbus-helper-search-path.patch".Ludovic Courtès2016-03-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/glib.scm (dbus)[source]: Apply "dbus-helper-search-path.patch". (dbus/activation): Remove. * gnu/services/dbus.scm (<dbus-configuration>)[dbus]: Default to DBUS. (dbus-service): Likewise.
| * | | gnu: eudev: Add dependency on blkid.Ludovic Courtès2016-03-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/linux.scm (eudev)[inputs]: Add UTIL-LINUX. (eudev-with-blkid): Remove. * gnu/services/base.scm (udev-service): Use EUDEV instead of EUDEV-WITH-BLKID. * gnu/system.scm (%base-packages): Likewise.
| * | | gnu: graphite2: Update to 1.3.6.Ludovic Courtès2016-03-09
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/fontutils.scm (graphite2)[replacement]: Remove. [version, source]: Update to 1.3.6. (graphite2-1.3.6): Remove.
| * | | gnu: openssl: Update to 1.0.2g.Ludovic Courtès2016-03-09
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/tls.scm (openssl)[replacement]: Remove. [version, source]: Bump to 1.0.2g. Use "openssl-c-rehash-in.patch" instead of "openssl-c-rehash.patch". (openssl-1.0.2g): Remove. * gnu-system.am (dist_patch_DATA): Remove "openssl-c-rehash.patch".
| * | | gnu: perl: Incorporate patch for CVE-2016-2381.Ludovic Courtès2016-03-09
| | | | | | | | | | | | | | | | | | | | | | | | * gnu/packages/perl.scm (perl)[source]: Add "perl-CVE-2016-2381.patch". [replacement]: Remove. (perl-fixed): Remove.
* | | | gnu: chicken: Build with GCC 4.8.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/scheme.scm (chicken)[native-inputs]: Add GCC 4.8.
* | | | gnu: chicken: Disable port tests.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/scheme.scm (chicken)[arguments]: Do not run port tests.
* | | | gnu: chicken: Use "modify-phases" syntax.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | | | | | * gnu/packages/scheme.scm (chicken)[arguments]: Use "modify-phases" syntax.
* | | | gnu: chicken: Update to 4.10.0.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/scheme.scm (chicken): Update to 4.10.0.
* | | | gnu: mutt: Enable header caching.Leo Famulari2016-03-21
| | | | | | | | | | | | | | | | | | | | * gnu/packages/mail.scm (mutt)[inputs]: Add gdbm. [arguments]: Pass --enable-hcache to #:configure-flags.
* | | | gnu: gmtp: Update to 1.3.10.Efraim Flashner2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/libusb.scm (gmtp): Update to 1.3.10.
* | | | gnu: artanis: Update to 0.1.2.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | | | | | * gnu/packages/guile.scm (artanis): Update to 0.1.2. [arguments]: Set DESTDIR.
* | | | gnu: Add r-doparallel.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-doparallel): New variable.
* | | | gnu: Add r-foreach.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-foreach): New variable.
* | | | gnu: Add r-codetools.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-codetools): New variable.
* | | | gnu: Add r-iterators.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/statistics.scm (r-iterators): New variable.
* | | | gnu: Add ustr.Ricardo Wurmus2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/textutils.scm (ustr): New variable.
* | | | gnu: ddrescue: Update to 1.21.Efraim Flashner2016-03-21
| | | | | | | | | | | | | | | | * gnu/packages/disk.scm (ddrescue): Update to 1.21.
* | | | build: Rewrite comments for man pages.Mathieu Lirzin2016-03-20
| | | | | | | | | | | | | | | | | | | | * doc.am <Man pages>: Rewrite comments to describe the build process and the meaning of the noticeable idiosyncrasies in a more general way.
* | | | build: Build man pages in $(srcdir).Mathieu Lirzin2016-03-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Before that the doc/guix.1 rule was always triggered when doing a VPATH build from a tarball. * doc.am (sub_commands_mans, dist_man1_MANS): man pages are now generated in $(srcdir) like the info manual. (doc/guix.1, doc/guix-%.1): Prepend $(srcdir) to target name. [BUILD_DAEMON] (doc/guix-daemon.1): Likewise.
* | | | build: Make 'guix' man page depend on scripts/guix.in.Mathieu Lirzin2016-03-20
| | | | | | | | | | | | | | | | * doc.am (doc/guix.1): Add scripts/guix.in prerequisite.
* | | | Revert "build: Do not remake doc/guix.1."Mathieu Lirzin2016-03-20
| | | | | | | | | | | | | | | | This reverts commit 97966e6d65bd3d450f12c7bb41af5f9eafd35a60.
* | | | gnu: udisks: Enforce non-reference of the "doc" output.Ludovic Courtès2016-03-20
| | | | | | | | | | | | | | | | | | | | * gnu/packages/freedesktop.scm (udisks)[arguments]: Add #:disallowed-references.
* | | | build-system/gnu: Add #:disallowed-references.Ludovic Courtès2016-03-20
| | | | | | | | | | | | | | | | | | | | | | | | * guix/build-system/gnu.scm (gnu-build): Add #:disallowed-references and honor it. (gnu-cross-build): Likewise.
* | | | gexp: Add #:disallowed-references.Ludovic Courtès2016-03-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * guix/gexp.scm (gexp->derivation): Add #:disallowed-references and honor it. * tests/gexp.scm ("gexp->derivation #:disallowed-references, allowed") ("gexp->derivation #:disallowed-references"): New tests. * doc/guix.texi (G-Expressions): Adjust accordingly.
* | | | derivations: Add #:disallowed-references.Ludovic Courtès2016-03-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * guix/derivations.scm (derivation): Add #:disallowed-references. [user+system-env-vars]: Honor it. (build-expression->derivation): Likewise. * tests/derivations.scm ("derivation #:disallowed-references, ok") ("derivation #:disallowed-references, not ok"): New tests. * doc/guix.texi (Derivations): Adjust accordingly.
* | | | system: Make sure fonts are searched for in the system profile.Ludovic Courtès2016-03-20
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | This fixes a bug whereby fonts in /run/current-system/profile would be invisible to Fontconfig. * gnu/packages/fontutils.scm (fontconfig): Add comment about system profile not being searched. * gnu/system/shadow.scm (default-skeletons)[fonts.conf-content, fonts.conf]: New variable. Add FONTS.CONF to the skeletons.