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* union: Allow callers to choose the collision resolution policy.Ludovic Courtès2018-04-08
| | | | | | | * guix/build/union.scm (warn-about-collision): New procedure. (union-build): Add #:resolve-collision. [resolve-collisions]: Call it. * tests/union.scm ("union-build collision first & last"): New test.
* modules: Report the search path in &missing-dependency-error.Ludovic Courtès2018-04-08
| | | | | * guix/modules.scm (&missing-dependency-error)[search-path]: New field. (source-module-dependencies): Initialize the 'search-path' field.
* tests: Skip 'pivot-root' test on Ubuntu's 4.4 kernels.Ludovic Courtès2018-04-08
| | | | | | | | Fixes <https://bugs.gnu.org/25476>. Reported by Paul Garlick <pgarlick@tourbillion-technology.com> and Maria Sidorova <hydromasha@gmail.com>. * tests/syscalls.scm ("pivot-root"): Skip on known-bad Ubuntu kernels.
* gnu: grammalecte: Fix build.Nicolas Goaziou2018-04-08
| | | | | * gnu/packages/dictionaries.scm (grammalecte)[arguments]: Add phase to fix build script.
* gnu: grammalecte: Update to 0.6.3.1.Nicolas Goaziou2018-04-08
| | | | * gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.3.1.
* gnu: Add emacs-evil-anzu.Sohom Bhattacharjee2018-04-07
| | | | | | * gnu/packages/emacs.scm (emacs-evil-anzu): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
* gnu: git: Fix checksum patch in 'patch-tests'.YOANN P2018-04-06
| | | | | | | | * gnu/packages/version-control.scm (git)[arguments]: In 'patch-tests' phase, use %store-directory instead of '/gnu' to prevent tests failure in case a custom store path is used. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: miniupnpc: Update to 2.0.20180406.Marius Bakke2018-04-06
| | | | * gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20180406.
* gnu: talloc: Update to 2.1.13.Marius Bakke2018-04-06
| | | | * gnu/packages/samba.scm (talloc): Update to 2.1.13.
* gnu: strace: Update to 4.22.Marius Bakke2018-04-06
| | | | | * gnu/packages/linux.scm (strace): Update to 4.22. [source](uri): Download from home page.
* gnu: ldc, bap: Build with Clang 3.8.Marius Bakke2018-04-06
| | | | | | | * gnu/packages/ldc.scm (ldc-bootstrap, ldc): Change LLVM and CLANG to LLVM-3.8 and CLANG-3.8. * gnu/packages/ocaml.scm (bap)[native-inputs]: Change CLANG to CLANG-3.8. [propagated-inputs, inputs]: Change LLVM to LLVM-3.8.
* gnu: llvm, clang: Update to 6.0.0.Marius Bakke2018-04-06
| | | | | | | | | | | | | * gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 6.0.0. (clang-from-llvm)(patches): Set to empty list. [arguments]: Adjust substitutions depending on major version. (llvm-3.8, clang-runtime-3.8, clang-3.8): New public variables. (clang-3.7, clang-3.6, clang-3.5)(patches): Add 'clang-3.5-libc-search-path.patch'. (clang-3.9.1)(patches): Add 'clang-3.8-libc-search-path.patch'. * gnu/packages/patches/clang-6.0-libc-search-path.patch: New file. * gnu/packages/patches/clang-libc-search-path.patch: Rename to ... * gnu/packages/patches/clang-3.5-libc-search-path.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu: sambamba: Update to 0.6.7-10-g223fa20.Ricardo Wurmus2018-04-06
| | | | | | | | * gnu/packages/bioinformatics.scm (sambamba)[source]: Fetch from git. [arguments]: Disable parallel build; rename build phase "place-biod" to "place-biod-and-undead"; add build phase "fix-ldc-version"; adjust phase "unbundle-prerequisites". [native-inputs]: Add python2-minimal; update biod sources; add undead sources.
* gnu: htslib-for-sambamba: Fix build.Ricardo Wurmus2018-04-06
| | | | | * gnu/packages/bioinformatics.scm (htslib-for-sambamba)[arguments]: Do not inherit htslib arguments.
* gnu: certbot: Update to 0.23.0.Leo Famulari2018-04-05
| | | | * gnu/packages/tls.scm (certbot, python-acme): Update to 0.23.0.
* gnu: Add java-native-access-platform.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-native-access-platform): New variable.
* gnu: Add java-native-access.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-native-access): New variable.
* gnu: Add java-jakarta-oro.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-jakarta-oro): New variable.
* gnu: Add java-commons-vfs.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-commons-vfs): New variable.
* gnu: Add java-commons-httpclient.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-commons-httpclient): New variable.
* gnu: Add java-commons-bsf.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-commons-bsf): New variable.
* gnu: Update java-commons-cli to 1.4.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-commons-cli): Update to 1.4.
* gnu: Add java-jline-2.Julien Lepiller2018-04-05
| | | | * gnu/packages/java.scm (java-jline-2): New variable.
* gnu: openssh: Update to 7.7p1.Leo Famulari2018-04-05
| | | | | * gnu/packages/ssh.scm (openssh): Update to 7.7p1. [arguments]: Set the test suite's working directory in #:make-flags.
* gnu: tiled: Update to 1.1.4.David Thompson2018-04-05
| | | | * gnu/packages/game-development.scm (tiled): Update to 1.1.4.
* gnu: Add subdl.Pierre Neidhardt2018-04-05
| | | | | | * gnu/packages/video.scm (subdl): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: iptables: Remove trailing newline from description.Tobias Geerinckx-Rice2018-04-05
| | | | | | ...introduced in be5dc5fb18a4b72977748c5f077062be4e8accbc. * gnu/packages/linux.scm (iptables)[description]: Remove trailing newline.
* gnu: perl-db-file: Update to 1.841.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/databases.scm (perl-db-file): Update to 1.841.
* gnu: licensecheck: Update to 3.0.34.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/license.scm (licensecheck): Update to 3.0.34.
* gnu: cppcheck: Update to 1.83.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/check.scm (cppcheck): Update to 1.83.
* gnu: gama: Update to 1.22.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/gps.scm (gama): Update to 1.22.
* gnu: lmdb: Update to 0.9.22.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/databases.scm (lmdb): Update to 0.9.22.
* gnu: getmail: Update to 5.6.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/mail.scm (getmail): Update to 5.6.
* gnu: jpegoptim: Use HTTPS home page.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/image.scm (jpegoptim)[home-page]: Use HTTPS.
* gnu: jpegoptim: Update to 1.4.5.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/image.scm (jpegoptim): Update to 1.4.5.
* gnu: debootstrap: Update to 1.0.95.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/debian.scm (debootstrap): Update to 1.0.95.
* gnu: czmq: Update to 4.1.1.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/networking.scm (czmq): Update to 4.1.1.
* gnu: musescore: Update to 2.2.1.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/music.scm (musescore): Update to 2.2.1.
* gnu: mate-themes: Update to 3.22.16.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/mate.scm (mate-themes): Update to 3.22.16.
* gnu: asymptote: Update to 2.42.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/plotutils.scm (asymptote): Update to 2.42.
* gnu: Use HTTPS for statnet.org home pages.Tobias Geerinckx-Rice2018-04-05
| | | | | * gnu/packages/cran.scm (r-network, r-statnet-common, r-sna)[home-page]: Use HTTPS and canonical domain name.
* gnu: r-network: Update to 1.13.0.1.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/cran.scm (r-network): Update to 1.13.0.1.
* gnu: r-lmtest: Update to 0.9-36.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/cran.scm (r-lmtest): Update to 0.9-36.
* gnu: r-broom: Update to 0.4.4.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/cran.scm (r-broom): Update to 0.4.4.
* gnu: r-ggthemes: Update to 3.4.2.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.2.
* gnu: r-caret: Update to 6.0-79.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/statistics.scm (r-caret): Update to 6.0-79.
* gnu: r-viridis: Update to 0.5.1.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/statistics.scm (r-viridis): Update to 0.5.1.
* gnu: r-matrix: Update to 1.2-13.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/statistics.scm (r-matrix): Update to 1.2-13.
* gnu: r-cluster: Update to 2.0.7.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/statistics.scm (r-cluster): Update to 2.0.7.
* gnu: r-glmnet: Update to 2.0-16.Tobias Geerinckx-Rice2018-04-05
| | | | * gnu/packages/statistics.scm (r-glmnet): Update to 2.0-16.
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