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* gnu: elixir: Enable more tests and remove patch.erlang-and-elixir-changesChristopher Baines2018-06-01
| | | | | | | | | | | | | | | | | Previously, due to issues in the erlang package, many tests would fail, and the package would also nondeterministically fail to build. This is now fixed (by patching occurances of /bin/sh in the erlang package), so all the tests can be run. * gnu/packages/elixir.scm (elixir)[source]: Remove patches. The patch is no longer necessary, as all the tests now pass. [arguments]: Remove the fix-or-disable-tests phase, all the tests now pass. Add a new set-home phase to set the HOME environment variable prior to running the tests, as that was previously done at the start of the fix-or-disable-tests phase. * gnu/packages/patches/elixir-disable-failing-tests.patch: Delete this file, as it is now unused. * gnu/local.mk: Remove now deleted patch.
* gnu: erlang: Patch occurrences of /bin/sh in the source.Christopher Baines2018-06-01
| | | | | | | | | Previously, the elixir package would often fail to build, as running :os:cmd would fail, as /bin/sh doesn't exist when building the elixir package. These changes fix that issue. * gnu/packages/erlang.scm (erlang)[arguments]: Add new patch-/bin/sh phase to replace hardcoded references to /bin/sh with a file in the store.
* gexp: 'compiled-modules' no longer overrides (guix build utils).Ludovic Courtès2018-06-01
| | | | | | | | | | | | | | | | | | | | | Until now 'compiled-modules' would override (guix build utils) with its own. Thus, when asked to build a different (guix build utils), via #:module-path, it would fail badly because a (guix build utils) module was already loaded and possibly incompatible with the new one. This happened when running 'guix pull --branch=core-updates' from current master: in 'core-updates', (guix build utils) exports 'ignore-error?' but in 'master' it does not. Thus, 'guix pull' would fail with: no binding `invoke-error?' in module (guix build utils) builder for `/gnu/store/…-module-import-compiled.drv' failed with exit code 1 cannot build derivation `/gnu/store/…-compute-guix-derivation.drv': 1 dependencies couldn't be built This patch fixes it. * guix/gexp.scm (compiled-modules)[build-utils-hack?]: New variable. [build]: Load MODULES/build/utils.scm when it exists.
* gnu: rust: Add support for building 32-bit packages on 64-bit hosts.Robin Templeton2018-06-01
| | | | | | | | | | * gnu/packages/rust.scm (rust-bootstrap, rust-1.23): Use nix-system->gnu-triplet to determine the system type. (rust-1.19): Use readelf instead of nm in the atomic-lock-free test. (rust-1.23): Disable the cargo_test_env test. Disable parallel execution of tests. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add git-annex.Timothy Sample2018-06-01
| | | | | | * gnu/packages/version-control.scm (git-annex): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-disk-free-space.Timothy Sample2018-06-01
| | | | | | * gnu/packages/haskell.scm (ghc-disk-free-space): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: ghc-psqueues: Allow building with newer versions of QuickCheck.Timothy Sample2018-06-01
| | | | | | | * gnu/packages/haskell.scm (ghc-psqueues)[arguments]: Add configure flag to allow newer versions of QuickCheck. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-safesemaphore.Timothy Sample2018-06-01
| | | | | | * gnu/packages/haskell.scm (ghc-safesemaphore): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-esqueleto.Timothy Sample2018-06-01
| | | | | | * gnu/packages/haskell.scm (ghc-esqueleto): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-ifelse.Timothy Sample2018-06-01
| | | | | | * gnu/packages/haskell.scm (ghc-ifelse): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-feed.Timothy Sample2018-06-01
| | | | | | * gnu/packages/haskell.scm (ghc-feed): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add ghc-bloomfilter.Timothy Sample2018-06-01
| | | | | | * gnu/package/haskell.scm (ghc-bloomfilter): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* services: Add hpcguix-web.Rouby Pierre-Antoine2018-06-01
| | | | | | | | | | | | * gnu/service/web.scm (<hpcguix-web-configuration>): New record-type. (%hpcguix-web-accounts): New variable. (%hpcguix-web-activation,hpcguix-web-shepherd-service, hpcguix-web-service-type): New procedures. * gnu/tests/web.scm (run-hpcguix-web-server-test): New procedure. (%hpcguix-web-specs, %hpcguix-web-os, %test-hpcguix-web): New variable. * doc/guix.texi (Web Services): Add 'hpcguix-web'. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add hpcguix-web.Rouby Pierre-Antoine2018-06-01
| | | | | | * gnu/package/web.scm (hpcguix-web): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* marionette: Add 'wait-for-tcp-port'.Ludovic Courtès2018-06-01
| | | | | | * gnu/build/marionette.scm (wait-for-tcp-port): New procedure. * gnu/tests/dict.scm (run-dicod-test)["connect inside"]: Use it instead of the inline loop.
* gnu: emacs-w3m: Update and allow builds with Emacs 26.Ludovic Courtès2018-06-01
| | | | | | | | | * gnu/packages/emacs.scm (emacs-w3m)[source]: Grab the source from github.com. [native-inputs]: Add TEXINFO. [arguments]: Add 'support-emacs!' phase. In 'patch-exec-paths' phase, make w3m.el and w3m-image.el writable. Remove substitution for 'w3m-image-viewer', which no longer exists.
* gnu: sddm: Fix CMake build.Stefan Stefanović2018-06-01
| | | | | | | | * gnu/packages/display-managers.scm (sddm): Fix CMake build. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/patches/sddm-fix-build-with-qt-5.11-1024.patch: New file. Signed-off-by: Rutger Helling <rhelling@mykolab.com>
* scripts: system: Sort profile generations in reverse order.Mathieu Othacehe2018-06-01
| | | | | | * guix/scripts/system.scm (profile-boot-parameters): Reverse generation-numbers list. This allows old generations to be listed from most recent to oldest in bootloaders configuration files.
* gnu: prosody: Update to 0.10.2 [fixes CVE-2018-10847].Leo Famulari2018-05-31
| | | | * gnu/packages/messaging.scm (prosody): Update to 0.10.2.
* gnu: Add emacs-zotxt.Konrad Hinsen2018-05-31
| | | | | | * gnu/packages/emacs.scm (emacs-zotxt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add emacs-org-caldav.Konrad Hinsen2018-05-31
| | | | | | * gnu/packages/emacs.scm (emacs-org-caldav): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-bigfloat.Konrad Hinsen2018-05-31
| | | | | | | * gnu/packages/python.scm (python-bigfloat, python2-bigfloat): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: bear: Fix python path.Fis Trivial2018-05-31
| | | | | | | * gnu/packages/build-tools.scm (bear) [inputs]: Add python-wrapper. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* records: Make a couple of procedures available at expansion time.Ludovic Courtès2018-05-31
| | | | | * guix/records.scm (current-abi-identifier, abi-check): Wrap in 'eval-when'.
* system: 'read-boot-parameters' provides a more meaningful warning.Ludovic Courtès2018-05-31
| | | | | | | 'system' here was bound to Guile's 'system' procedure. * gnu/system.scm (read-boot-parameters): Fix argument for fallback warning.
* file-systems: Always wait for devices to show up.Ludovic Courtès2018-05-31
| | | | | | | | | | Previously, 'canonicalize-device-spec' would wait for devices when they were specified as a label or UUID, but would not wait when the user passed a "/dev" file name directly. This could cause problems when the /dev node takes a while to show up. * gnu/build/file-systems.scm (canonicalize-device-spec): Add 'resolve' call in the 'string?' case.
* self: Reduce the set of dependencies.Ludovic Courtès2018-05-31
| | | | | | | | By mistake we were adding more dependencies than needed to the Scheme derivations. * guix/self.scm (compiled-guix)[dependencies]: Use 'package-transitive-propagated-inputs', not 'package-transitive-inputs'.
* gnu: r-servr: Update to 0.10.Ricardo Wurmus2018-05-31
| | | | | * gnu/packages/web.scm (r-servr): Update to 0.10. [native-inputs]: Remove r-rcpp.
* gnu: r-seurat: Update to 2.3.1.Ricardo Wurmus2018-05-31
| | | | | * gnu/packages/bioinformatics.scm (r-seurat): Update to 2.3.1. [propagated-inputs]: Remove r-gridextra; add r-reticulate.
* gnu: r-shiny: Update to 1.1.0.Ricardo Wurmus2018-05-31
| | | | | | * gnu/packages/web.scm (r-shiny): Update to 1.1.0. [source]: Fetch from git. [propagated-inputs]: Add r-crayon.
* gnu: r-rjson: Update to 0.2.19.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/web.scm (r-rjson): Update to 0.2.19.
* gnu: r-htmltable: Update to 1.12.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/web.scm (r-htmltable): Update to 1.12.
* gnu: r-directlabels: Update to 2018.05.22.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-directlabels): Update to 2018.05.22.
* gnu: r-ranger: Update to 0.10.0.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-ranger): Update to 0.10.0.
* gnu: r-tclust: Update to 1.4-1.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-tclust): Update to 1.4-1.
* gnu: r-caret: Update to 6.0-80.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-caret): Update to 6.0-80.
* gnu: r-quantreg: Update to 5.36.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-quantreg): Update to 5.36.
* gnu: r-rrcov: Update to 1.4-4.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-rrcov): Update to 1.4-4.
* gnu: r-ggthemes: Update to 3.5.0.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-ggthemes): Update to 3.5.0.
* gnu: r-runit: Update to 0.4.32.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-runit): Update to 0.4.32.
* gnu: r-purrr: Update to 0.2.5.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-purrr): Update to 0.2.5.
* gnu: r-tidyr: Update to 0.8.1.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-tidyr): Update to 0.8.1.
* gnu: r-synchronicity: Update to 1.3.4.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-synchronicity): Update to 1.3.4.
* gnu: r-rngtools: Update to 1.3.1.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.
* gnu: r-pkgmaker: Update to 0.27.Ricardo Wurmus2018-05-31
| | | | | * gnu/packages/statistics.scm (r-pkgmaker): Update to 0.27. [propagated-inputs]: Add r-bibtex, r-magrittr, r-stringi, and r-withr.
* gnu: r-lambda-r: Update to 1.2.3.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-lambda-r): Update to 1.2.3.
* gnu: r-plotrix: Update to 3.7-2.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-plotrix): Update to 3.7-2.
* gnu: r-data-table: Update to 1.11.4.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-data-table): Update to 1.11.4.
* gnu: r-rlang: Update to 0.2.1.Ricardo Wurmus2018-05-31
| | | | * gnu/packages/statistics.scm (r-rlang): Update to 0.2.1.
* gnu: r-knitrbootstrap: Update to 1.0.2.Ricardo Wurmus2018-05-31
| | | | | * gnu/packages/statistics.scm (r-knitrbootstrap): Update to 1.0.2. [propagated-inputs]: Add r-markdown.
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