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* gnu: r-glmnet: Update to 4.0-2.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/statistics.scm (r-glmnet): Update to 4.0-2. [propagated-inputs]: Add r-survival.
* gnu: r-rmarkdown: Update to 2.3.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/statistics.scm (r-rmarkdown): Update to 2.3.
* gnu: r-backports: Update to 1.1.8.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/statistics.scm (r-backports): Update to 1.1.8.
* gnu: r-ggplot2: Update to 3.3.2.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.2.
* gnu: r-isoband: Update to 0.2.2.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-isoband): Update to 0.2.2. [propagated-inputs]: Remove r-rcpp.
* gnu: r-zvcv: Update to 2.1.0.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-zvcv): Update to 2.1.0. [propagated-inputs]: Remove r-partitions; add r-bh, r-dplyr, r-magrittr, and r-rlinsolve.
* gnu: r-umap: Update to 0.2.6.0.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-umap): Update to 0.2.6.0.
* gnu: r-ldheatmap: Update to 0.99-8.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-ldheatmap): Update to 0.99-8.
* gnu: r-nonnest2: Update to 0.5-4.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-nonnest2): Update to 0.5-4.
* gnu: r-rcppgsl: Update to 0.3.8.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.8. [native-inputs]: Remove r-knitr.
* gnu: r-ggeffects: Update to 0.15.0.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-ggeffects): Update to 0.15.0.
* gnu: r-bayestestr: Update to 0.7.0.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-bayestestr): Update to 0.7.0.
* gnu: r-rstatix: Update to 0.6.0.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-rstatix): Update to 0.6.0. [propagated-inputs]: Add r-generics.
* gnu: r-radiant-data: Update to 1.3.9.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-radiant-data): Update to 1.3.9.
* gnu: r-tinytex: Update to 0.24.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-tinytex): Update to 0.24.
* gnu: r-xfun: Update to 0.15.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-xfun): Update to 0.15.
* gnu: r-calibrate: Update to 1.7.7.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-calibrate): Update to 1.7.7.
* gnu: r-htmltable: Update to 2.0.0.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-htmltable): Update to 2.0.0. [native-inputs]: Add r-knitr.
* gnu: r-htmltools: Update to 0.5.0.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/cran.scm (r-htmltools): Update to 0.5.0. [propagated-inputs]: Remove r-rcpp; add r-base64enc.
* gnu: r-v8: Update to 3.2.0.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-v8): Update to 3.2.0.
* gnu: r-hdf5array: Update to 1.16.1.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.16.1.
* gnu: r-rhdf5: Update to 2.32.1.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.1.
* gnu: r-biomart: Update to 2.44.1.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.1.
* gnu: r-genomeinfodb: Update to 1.24.2.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.2.
* gnu: r-gdsfmt: Update to 1.24.1.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.24.1.
* gnu: r-cicero: Update to 1.6.1.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.1. [propagated-inputs]: Add r-stringi.
* gnu: r-cytoml: Update to 2.0.5.Ricardo Wurmus2020-06-22
| | | | | * gnu/packages/bioconductor.scm (r-cytoml): Update to 2.0.5. [propagated-inputs]: Add r-xml2.
* gnu: r-wiggleplotr: Update to 1.12.1.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.12.1.
* gnu: r-regioner: Update to 1.20.1.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/bioconductor.scm (r-regioner): Update to 1.20.1.
* gnu: Add r-rlinsolve.Ricardo Wurmus2020-06-22
| | | | * gnu/packages/cran.scm (r-rlinsolve): New variable.
* gnu: cuirass: Update to 0.0.1-33-61cc56f6.Mathieu Othacehe2020-06-22
| | | | * gnu/packages/ci.scm (cuirass): Update to 0.0.1-33-61cc56f6.
* gnu: xl2tpd: Fix typo.Mathieu Othacehe2020-06-22
| | | | * gnu/packages/vpn.scm (xl2tpd)[arguments]: Turn "-DPPD" into "-DPPPD".
* gnu: express: Update to 1.5.3.Ricardo Wurmus2020-06-22
| | | | | | * gnu/packages/bioinformatics.scm (express): Update to 1.5.3. [source]: Fetch from Github. [arguments]: Add phase "remove-update-check".
* gnu: youtube-dl: Update to 2020.06.16.Tobias Geerinckx-Rice2020-06-22
| | | | * gnu/packages/video.scm (youtube-dl): Update to 2020.06.16.
* gnu: vmpk: Update home page.Tobias Geerinckx-Rice2020-06-22
| | | | gnu/packages/music.scm (vmpk)[home-page]: Update TLD and use HTTPS.
* gnu: bison-3.6: Don't change the name of the package.Jakub Kądziołka2020-06-22
| | | | | | This is a follow-up to commit 512d23c65d82bb874ca1fb3c12095b1cec8bbfca. * gnu/packages/bison (bison-3.6)[name]: Remove the overridden value.
* gnu: linux-libre@4.14: Update to 4.14.185.Mark H Weaver2020-06-21
| | | | | * gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.185. (linux-libre-4.14-pristine-source): Update hash.
* gnu: linux-libre@4.9: Update to 4.9.228.Mark H Weaver2020-06-21
| | | | | * gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.228. (linux-libre-4.9-pristine-source): Update hash.
* gnu: linux-libre@4.4: Update to 4.4.228.Mark H Weaver2020-06-21
| | | | | * gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.228. (linux-libre-4.4-pristine-source): Update hash.
* gnu: Add r-boruta.Peter Lo2020-06-21
| | | | | | * gnu/packages/statistics.scm (r-boruta): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: xmoto: Update to 0.6.1.Nicolas Goaziou2020-06-22
| | | | | | * gnu/packages/games.scm (xmoto): Update to 0.6.1. [arguments]: Remove phase installing man pages, now properly handled by the installation script.
* gnu: emacs-relint: Update to 1.18.Nicolas Goaziou2020-06-21
| | | | * gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.18.
* gnu: guile: Add 3.0.3.Ludovic Courtès2020-06-21
| | | | * gnu/packages/guile.scm (guile-3.0.3): New variable.
* gnu: Add seahorse-adventures.Nicolas Goaziou2020-06-21
| | | | * gnu/packages/games.scm (seahorse-adventures): New variable.
* gnu: Add font-mplus-testflight.Julien Lepiller2020-06-21
| | | | * gnu/packages/fonts.scm (font-mplus-testflight): New variable.
* gnu: k3b: Update to 20.04.2.Timotej Lazar2020-06-21
| | | | | | * gnu/packages/kde-multimedia.scm (k3b): Update to 20.04.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: k3b: Note the runtime dependency on udisks-service.Timotej Lazar2020-06-21
| | | | | | | * gnu/packages/kde-multimedia.scm (k3b)[description]: Note that udisks-service should be enabled. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: k3b: Add inputs for libraries loaded at runtime.Timotej Lazar2020-06-21
| | | | | | | | | | | Patch the source to load these from absolute paths. Actual loading is done by the Qt library, so we cannot use k3b’s runpath. * gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add libcdio-paranoia and libdvdcss. [arguments]<#:phases>[set-absolute-library-paths]: New phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: k3b: Add inputs for external programs.Timotej Lazar2020-06-21
| | | | | | | | | * gnu/packages/kde-multimedia.scm (k3b)[inputs]: Add cdrdao, dvd+rw-tools, libburn and sox. [arguments]<#:phases>[wrap-path]: New phase to wrap the binary with paths to the above. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add cdrdao.Timotej Lazar2020-06-21
| | | | | | * gnu/packages/cdrom.scm (cdrdao): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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