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* gnu: python-cffi: Fix test failure on i686.Marius Bakke2018-11-11
| | | | | | * gnu/packages/patches/python-cffi-x87-stack-clean.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/libffi.scm (python-cffi)[source](patches): Add it.
* gnu: python-yapf: Update to 0.24.0.Efraim Flashner2018-11-11
| | | | * gnu/packages/python.scm (python-yapf): Update to 0.24.0.
* gnu: python-rq: Update to 0.12.0.Efraim Flashner2018-11-11
| | | | * gnu/packages/databases.scm (python-rq): Update to 0.12.0.
* gnu: python-pyclipper: Enable tests.Efraim Flashner2018-11-11
| | | | | | * gnu/packages/python.scm (python-pyclipper)[arguments]: Enable tests. [native-inputs]: Add python-pytest, python-pytest-runner, python-unittest2.
* gnu: python-pyclipper: Update to 1.1.0post1.Efraim Flashner2018-11-11
| | | | | | | | * gnu/packages/python.scm (python-pyclipper): Update to 1.1.0post1. [source]: Add snippet to remove cythonized source files. [arguments]: Add custom phase to generate cythonized files. [native-inputs]: Add python-cython. [description]: Update clipper library version.
* gnu: python-paste: Update to 3.0.4.Efraim Flashner2018-11-11
| | | | | | | | | * gnu/packages/python-web.scm (python-paste): Update to 3.0.4. [source]: Remove patch, add snippet to remove one test. [native-inputs]: Add python-pytest, python-pytest-runner. * gnu/packages/patches/python-paste-remove-website-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: python-networkx2: Remove variable.Efraim Flashner2018-11-11
| | | | | | | * gnu/packages/python.scm (python-networkx2): Remove variable. * gnu/packages/patches/python-networkx2-reproducible-build.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
* gnu: python-alembic: Update to 1.0.2.Efraim Flashner2018-11-11
| | | | | * gnu/packages/databases.scm (python-alembic, python2-alembic): Update to 1.0.2.
* gnu: bitshuffle: Don't use '-march=native'.Efraim Flashner2018-11-11
| | | | | * gnu/packages/compression.scm (bitshuffle)[arguments]: Add custom phase to substitute out the '-march=native' compilation flag.
* gnu: bitshuffle: Update to 0.3.5.Efraim Flashner2018-11-11
| | | | | * gnu/packages/compression.scm (bitshuffle): Update to 0.3.5. [source]: Add snippet to remove cythonized source files.
* gnu: tvtime: Fix building with glibc@2.28.Efraim Flashner2018-11-11
| | | | | * gnu/packages/tvtime.scm (tvtime)[arguments]: Add custom phase to add missing import.
* gnu: nfs-utils: Fix building with glibc@2.28.Efraim Flashner2018-11-10
| | | | | * gnu/packages/nfs.scm (nfs-utils)[arguments]: Add custom phase to fix building with glibc@2.28.
* gnu: perl-autovivification: Update to 0.18.Efraim Flashner2018-11-10
| | | | * gnu/packages/perl.scm (perl-autovivification): Update to 0.18.
* gnu: idutils: Fix building with glibc@2.28.Efraim Flashner2018-11-10
| | | | | * gnu/packages/idutils.scm (idutils)[source]: Add snippet to patch bundled gnulib for glibc@2.28.
* gnu: sharutils: Remove false comment.Efraim Flashner2018-11-10
| | | | | | | This is a follow-up to b50d58b3445a85bf4395e2b767da10c2e3438902. * gnu/packages/compression.scm (sharutils)[source]: This snippet is, in fact, a snippet.
* gnu: lbzip2: Remove false comment.Efraim Flashner2018-11-10
| | | | | | | This is a follow-up to f268b744b84734b374a15feae1f02b9f2c4085c7. * gnu/packages/compression.scm (lbzip2)[source]: This snippet is, in fact, a snippet.
* gnu: lbzip2: Fix building with glibc@2.28.Efraim Flashner2018-11-10
| | | | | * gnu/packages/compression.scm (lbzip2)[source]: Add snippet to patch bundled gnulib for glibc@2.28.
* gnu: dvd+rw-tools: Use invoke.Efraim Flashner2018-11-10
| | | | * gnu/packages/cdrom.scm (dvd+rw-tools): Use 'invoke'.
* gnu: dvd+rw-tools: Fix building with glibc@2.28.Efraim Flashner2018-11-10
| | | | | * gnu/packages/cdrom.scm (dvd+rw-tools)[arguments]: Add custom phase to add missing import.
* gnu: f2fs-tools: Update to 1.11.0.Efraim Flashner2018-11-10
| | | | * gnu/packages/linux.scm (f2fs-tools): Update to 1.11.0.
* Merge branch 'master' into core-updatesMarius Bakke2018-11-09
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| * gnu: r-with-tests: Update to 3.5.1.Ricardo Wurmus2018-11-09
| | | | | | | | * gnu/packages/statistics.scm (r-with-tests): Update to 3.5.1.
| * gnu: r-with-tests: Use INVOKE.Ricardo Wurmus2018-11-09
| | | | | | | | | | * gnu/packages/statistics.scm (r-with-tests)[arguments]: Use INVOKE and return #T unconditionally.
| * gnu: Add emacs-gtk-look.Pierre Neidhardt2018-11-09
| | | | | | | | * gnu/packages/emacs.scm (emacs-gtk-look): New variable.
| * gnu: Add xmlrpc-c.Pierre Neidhardt2018-11-09
| | | | | | | | * gnu/packages/xml.scm (xmlrpc-c): New variable.
| * gnu: guile-newt: Update to revision 1.Mathieu Othacehe2018-11-09
| | | | | | | | * gnu/packages/guile.scm (guile-newt): Update to revision 1.
| * gnu: powertabeditor: Fetch sources from git.Ricardo Wurmus2018-11-09
| | | | | | | | * gnu/packages/music.scm (powertabeditor)[source]: Fetch from git.
| * gnu: powertabeditor: Use INVOKE.Ricardo Wurmus2018-11-09
| | | | | | | | | | * gnu/packages/music.scm (powertabeditor)[arguments]: Use INVOKE and return #T unconditionally.
| * gnu: wxmaxima: Update to 18.10.1.Kei Kebreau2018-11-09
| | | | | | | | | | | | | | | | * gnu/packages/maths.scm (wxmaxima): Update to 18.10.1. [source]: Update URL and remove patch. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
| * gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].Leo Famulari2018-11-08
| | | | | | | | * gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
| * gnu: Add emacs-clang-format.Pierre Neidhardt2018-11-08
| | | | | | | | * gnu/packages/emacs.scm (emacs-clang-format): New variable.
| * gnu: kodi: Update to 18.0b5.Efraim Flashner2018-11-08
| | | | | | | | | | | | | | | | | | * gnu/packages/kodi.scm (kodi): Update to 18.0b5. [source]: Update snippet. [inputs]: Add flatbuffers, fstrcmp. (crossguid): Update to commit fef89a4174a7bf8cd99fa9154864ce9e8e3bf989. (libdvdnav/kodi, libdvdread/kodi): Update to 6.0.0-Leia-Alpha-3. (libdvdcss/kodi): Update to 1.4.2-Leia-Beta-5.
| * gnu: Add fstrcmp.Efraim Flashner2018-11-08
| | | | | | | | * gnu/packages/kodi.scm (fstrcmp): New variable.
| * doc: Add index entries.Laura Lazzati2018-11-08
| | | | | | | | | | | | * doc/guix.texi: Added various cindex tags to assist readers. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * services: elogind: Fix spelling errors of left value fields in elogind ↵Stefan Stefanović2018-11-08
| | | | | | | | | | | | | | | | | | | | config file. * gnu/services/desktop.scm (elogind-configuration-file)[ini-file]: Fix spelling of left value fields: InhibitDelayMaxSecs, HoldoffTimeoutSecs, IdleActionSeconds, RemoveIpc. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: python-ilinkedlist: Update to 0.3.1.Luther Thompson2018-11-08
| | | | | | | | | | | | * gnu/packages/python.scm (python-ilinkedlist): Update to 0.3.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: Add python-pyelftools.Vagrant Cascadian2018-11-08
| | | | | | | | | | | | | | * gnu/packages/python.scm (python-pyelftools): New public variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| * gnu: libmusicbrainz: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/music.scm (libmusicbrainz)[arguments]: Use INVOKE and return #T unconditionally.
| * gnu: pd: Remove custom autoconf phase.Ricardo Wurmus2018-11-08
| | | | | | | | * gnu/packages/music.scm (pd)[arguments]: Remove custom autoconf phase.
| * gnu: cmus: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | | | | | * gnu/packages/music.scm (cmus)[source]: Fetch from git.
| * gnu: cmus: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/music.scm (cmus)[arguments]: Use INVOKE and return #T unconditionally.
| * gnu: pcc: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/c.scm (pcc)[arguments]: Use INVOKE and return #T unconditionally.
| * gnu: pplacer-scripts: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/bioinformatics.scm (pplacer-scripts)[arguments]: Use INVOKE and return #T unconditionally.
| * gnu: roary: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return #T unconditionally.
| * gnu: seek: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
| * gnu: sailfish: Use INVOKE.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use INVOKE instead of SYSTEM*.
| * gnu: vsearch: Update to 2.9.1.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/bioinformatics.scm (vsearch): Update to 2.9.1. * gnu/packages/patches/vsearch-unbundle-cityhash.patch: Update.
| * gnu: sra-tools: Update to 2.9.3.Ricardo Wurmus2018-11-08
| | | | | | | | | | * gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.3. [arguments]: Remove build phase patch-away-glibc-conflict.
| * gnu: plink-ng: Fetch sources from git.Ricardo Wurmus2018-11-08
| | | | | | | | * gnu/packages/bioinformatics.scm (plink-ng)[source]: Fetch from git.
| * gnu: ncbi-vdb: Update to 2.9.3.Ricardo Wurmus2018-11-08
| | | | | | | | * gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.3.
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