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* TODO I'm not sure what the license is for emacs-ob-mongoemacs-ob-mongoChristopher Baines2017-08-22
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* Switch to using the remove-require branchChristopher Baines2017-08-22
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* Auto commitChristopher Baines2017-08-22
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* gnu: r-minimal: Do not compress serialized files.Ricardo Wurmus2017-08-22
| | | | | | | | | * gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase "patch-which" with "do-not-compress-serialized-files". [propagated-inputs]: Move "which" from here... [inputs]: ...to here. Fixes <https://bugs.gnu.org/28157>.
* gnu: Add rmath-standalone.Ricardo Wurmus2017-08-22
| | | | * gnu/packages/statistics.scm (rmath-standalone): New variable.
* gnu: gst-plugins-bad: Build with wayland support.Efraim Flashner2017-08-22
| | | | * gnu/packages/gstreamer.scm (gst-plugins-bad)[inputs]: Add wayland.
* gnu: libraw: Update to 0.18.2.Efraim Flashner2017-08-22
| | | | | * gnu/packages/photo.scm (libraw): Update to 0.18.2. [source, home-page]: Use https.
* gnu: skalibs: Build reproducibly.Z. Ren2017-08-22
| | | | | | * gnu/packages/skarnet.scm (skalibs)[arguments]: Add #:phases. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: libjpeg-turbo: Build reproducibly.Ludovic Courtès2017-08-22
| | | | | | * gnu/packages/image.scm (libjpeg-turbo)[arguments]: Add #:configure-flags. Co-authored-by: Z. Ren <zren@dlut.edu.cn>
* gnu: python-netcdf4: Update to 1.2.9.Thomas Danckaert2017-08-22
| | | | * gnu/packages/python.scm (python-netcdf4): Update to 1.2.9.
* gnu: python-h5py: Update to 2.7.0.Thomas Danckaert2017-08-22
| | | | * gnu/packages/python.scm (python-h5py): Update to 2.7.0.
* gnu: terminology: Update to 1.1.0.Efraim Flashner2017-08-22
| | | | | | * gnu/packages/enlightenment.scm (terminology): Update to 1.1.0. [source]: Remove bundled fonts and references to them. [native-inputs]: Add gettext-minimal.
* gnu: Update emacs-rainbow-mode to 0.13.Oleg Pykhalov2017-08-22
| | | | | | * gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 0.13. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-internetarchive: Update to 1.7.1.Oleg Pykhalov2017-08-22
| | | | | | * gnu/packages/web.scm (python-internetarchive): Update to 1.7.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
* gnu: python-marshmallow: Update to 3.0.0b3.Tobias Geerinckx-Rice2017-08-21
| | | | * gnu/packages/python.scm (python-marshmallow): Update to 3.0.0b3.
* gnu: python-pylast: Update to 1.9.0.Tobias Geerinckx-Rice2017-08-21
| | | | * gnu/packages/python.scm (python-pylast): Update to 1.9.0.
* gnu: lollypop: Update to 0.9.244.Tobias Geerinckx-Rice2017-08-21
| | | | * gnu/packages/gnome.scm (lollypop): Update to 0.9.244.
* gnu: gspell: Update to 1.4.2.Tobias Geerinckx-Rice2017-08-21
| | | | * gnu/packages/gnome.scm (gspell): Update to 1.4.2.
* gnu: imagemagick: Update to 6.9.9-9.Marius Bakke2017-08-21
| | | | * gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-9.
* gnu: feh: Update to 2.19.3.Marius Bakke2017-08-21
| | | | * gnu/packages/image-viewers.scm (feh): Update to 2.19.3.
* gnu: perl-net-dns: Update to 1.12.Tobias Geerinckx-Rice2017-08-21
| | | | * gnu/packages/networking.scm (perl-net-dns): Update to 1.12.
* gnu: zstd: Update to 1.3.1.Tobias Geerinckx-Rice2017-08-21
| | | | * gnu/packages/compression.scm (zstd): Update to 1.3.1.
* gnu: openmpi: Configure without vampirtrace.Dave Love2017-08-21
| | | | | | | | | VT is obsoleted by scorep (not currently packaged) and disabling it reduces the closure considerably. * mpi.scm (openmpi)[arguments]: Configure without vampirtrace. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: openmpi: Modify configuration to reduce closure.Dave Love2017-08-21
| | | | | | | | | | | devel-headers are only for building MCA components, produce a large closure and aren't normally packaged. Only the affinity component of mpi-ext is useful. * gnu/packages/mpi.scm (openmpi)[arguments]: Don't configure --with-devel-headers and --enable-mpi-ext=all. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: openmpi: Remove references to compiler pathnames in "_info" programs.Dave Love2017-08-21
| | | | | | | | | | | | This reduces the closure greatly, but note that the Fortran .mod files are gfortran version-specific, so there should probably be development packages for each incompatible version. (The runtime is supposed to be more-or-less version-independent unless the libgfortran soname changes.) There may still be a case for a separate runtime output. * gnu/packages/mpi.scm (openmpi)[arguments]: Add "remove-absolute" phase. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: valgrind: Add separate "doc" output.Dave Love2017-08-21
| | | | | | | * gnu/packages/valgrind.scm (valgrind)[outputs]: New field. [arguments]: Add 'install-doc' phase. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu: openmpi: Remove "static" output.Dave Love2017-08-21
| | | | | | | | | | --enable-static removes dynamically-loaded MCA components. * gnu/packages/mpi.scm (openmpi)[outputs]: Remove field. [arguments]: Don't configure with --enable-static; remove 'move-static-libraries' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: openmpi: Add separate variant with thread-multiple support.Dave Love2017-08-21
| | | | | | | | * gnu/packages/mpi.scm (openmpi)[arguments]: Remove "--enable-mpi-thread-multiple". (openmpi-thread-multiple): New variable. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
* gnu: z3: Build Python bindings.Theodoros Foradis2017-08-21
| | | | | | | | | | * gnu/packages/maths.scm (z3): Add python bindings. [build-system]: Change to cmake-build-system. [arguments]: Remove "changedir" phase. Add "bootstrap" and "make-test-z3" phases; replace the "check" phase. Add #:configure-flags. Remove #:test-target. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: augeas: Update to 1.8.1. Fixes CVE-2017-7555.Efraim Flashner2017-08-21
| | | | * gnu/packages/augeas.scm (augeas): Update to 1.8.1.
* gnu: gnurl: Update to 7.55.1.ng02017-08-21
| | | | | | * gnu/packages/gnunet.scm (gnurl): Update to 7.55.1. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
* gnu: vifm: Update to 0.9.Efraim Flashner2017-08-20
| | | | | | | * gnu/packages/vim.scm (vifm): Update to 0.9. [source]: Add alternate uri. [arguments]: Remove build timestamp. Add phase to install vim plugins into vim plugin directory. Patch more shebangs.
* gnu: pspp: Update to 1.0.0.Efraim Flashner2017-08-20
| | | | * gnu/packages/statistics.scm (pspp): Update to 1.0.0.
* gnu: bundler: Update to 1.15.4.Tobias Geerinckx-Rice2017-08-20
| | | | * gnu/packages/ruby.scm (bundler): Update to 1.15.4.
* gnu: limnoria: Update to 2017.08.18.Tobias Geerinckx-Rice2017-08-20
| | | | * gnu/packages/irc.scm (limnoria): Update to 2017.08.18.
* guix download: Support retrieving local file without the URI scheme.宋文武2017-08-20
| | | | | | | * guix/scripts/download.scm (guix-download): Treat the URL argument as a local file path when it fails on 'string->uri'. Call 'fetch' with the processed 'uri' instead of the original URL argument. * tests/guix-download.sh: Adjust accordingly.
* gnu: graphicsmagick: Fix CVE-2017-{12935,12936,12937}.Kei Kebreau2017-08-20
| | | | | | | | * gnu/packages/patches/graphicsmagick-CVE-2017-12935.patch, gnu/packages/patches/graphicsmagick-CVE-2017-12936.patch, gnu/packages/patches/graphicsmagick-CVE-2017-12937.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/imagemagick.scm (graphicsmagick)[source]: Use them.
* gnu: r-minimal: Work around failure to embed reference to "which".Ricardo Wurmus2017-08-20
| | | | | | * gnu/packages/statistics.scm (r-minimal)[arguments]: Add phase "patch-which". [native-inputs]: Move "which" from here... [propagated-inputs]: ...to here.
* gnu: powertabeditor: Update to 2.0.0-alpha10.Ricardo Wurmus2017-08-20
| | | | | * gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha10. [arguments]: Remove "set-target-directories" phase; disable additional tests.
* gnu: Add r-annotationfilter.Ricardo Wurmus2017-08-20
| | | | * gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
* gnu: Add gnome-default-applications.Andy Wingo2017-08-20
| | | | | | * gnu/packages/gnome.scm (gnome-default-applications): New public variable. (gnome): Propagate gnome-default-applications so that nautilus is associated with folders, not baobab.
* gnu: gnome: Propagate font-dejavu.Andy Wingo2017-08-20
| | | | | | * gnu/packages/gnome.scm (gnome): Add font-dejavu to propagated inputs, to provide a better default for "Monospace". Otherwise the terminal looks horrible and defaults to Nimbus Mono, a Courier-like face.
* gnu: gobby: Re-add Gobby 0.4.Andy Wingo2017-08-20
| | | | * gnu/packages/gobby.scm (gobby-0.4): New variable.
* gnu: gnome: Propagate more packages.Andy Wingo2017-08-20
| | | | | * gnu/packages/gnome.scm (gnome): Add additional dependencies, inspired by Debian's "gnome-core" package.
* gnu: grub-efi-bootloader: Specialize grub-install invocation.Andy Wingo2017-08-20
| | | | | | | | | | | | | * gnu/bootloader/grub.scm (install-grub-efi): Fix grub-install invocation for EFI systems. * gnu/system/examples/bare-bones.tmpl: Use the newer "bootloader-configuration" syntax. * gnu/system/examples/desktop.tmpl: Use bootloader-configuration sytax. Also, use the same label for the LUKS-mapped device and the root partition. Remove unneeded "title" field for the file-system based on LUKS; as noted in the manual, the "title" field is ignored for mapped devices. * gnu/system/examples/lightweight-desktop.tmpl: Use bootloader-configuration, and use grub-efi-bootloader.
* gnu: gobby: Update to 0.5.0.Arun Isaac2017-08-20
| | | | | | * gnu/packages/gobby.scm (gobby): Update to 0.5.0. [inputs]: Remove libnet6 and obby. Add libinfinity. Sort. [arguments]: Add move-executable phase.
* gnu: Add libinfinity.Arun Isaac2017-08-20
| | | | * gnu/packages/gobby.scm (libinfinity): New variable.
* gnu: icedtea@3: Update to 3.5.1.Leo Famulari2017-08-19
| | | | * gnu/packages/java.scm (icedtea-8): Update to 3.5.1.
* gnu: icedtea@2: Update to 2.6.11 [security fixes].Leo Famulari2017-08-19
| | | | | | | Fixes CVE-2017-{10053,10067,10074,10081,10087,10089,10090,10096,10101,10102, 10107,10108,10109,10110,10111,10115,10116,10118,10135,10074,10176}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.11.
* gnu: libreoffice: Update to 5.3.5.2.Thomas Danckaert2017-08-19
| | | | * gnu/packages/libreoffice.scm (libreoffice): Update to 5.3.5.2.
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