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* Revert "gnu: Default to GCC 5."•••This reverts commit e3d0fcbf7e55e8cbe8d0a1c5a24d73f341d7243b. This is a temporary measure until GCC 5 builds on ARM, see: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=71399 Ludovic Courtès2016-06-07
* gnu: glibc-hurd-headers: Use correct "--host".•••* gnu/packages/base.scm (glibc/hurd-headers)[arguments]: Use "i586-pc-gnu" instead of "i686-pc-gnu". Manolis Ragkousis2016-06-06
* gnu: glibc-hurd: Update to 20160518.•••* gnu/packages/base.scm (glibc/hurd)[version]: Update to version 20160518. [propagated-inputs]: Use hurd-core-headers. [native-inputs]: Remove libpthread's source and "patch/libpthread-patch". [arguments]: Add augment-libc.so and pre-configure-set-pwd phases. Remove prepare-libpthread phase. Stop removing "--with-headers=" from original-configure-flags. * gnu/packages/patches/glibc-hurd-extern-inline.patch: Remove patch. * gnu/packages/patches/libpthread-glibc-preparation.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove them. Manolis Ragkousis2016-06-06
* gnu: pcre: Remove now-unneeded replacement.•••* gnu/packages/pcre.scm (pcre)[replacement]: Remove. (pcre-fixed): Remove. Ludovic Courtès2016-05-23
* Merge branch 'master' into core-updatesLudovic Courtès2016-05-23
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| * gnu: gnu-pw-mgr: Update to 2.0.•••* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 2.0. Efraim Flashner2016-05-22
| * gnu: imagemagick: Update to 6.9.4-4.•••* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.4-4. Leo Famulari2016-05-22
| * gnu: Add python2-rope.•••* gnu/packages/python.scm (python2-rope): New variable. Lukas Gradl2016-05-22
| * gnu: Add gnome-calendar.•••* gnu/packages/gnome.scm (gnome-calendar): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Kei Yamashita2016-05-21
| * gnu: Add envstore.•••* gnu/package/shellutils.scm: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Matthew Jordan2016-05-21
| * gnu: Add sicp.•••* gnu/packages/scheme.scm (sicp): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Jan Nieuwenhuizen2016-05-21
| * gnu: Add dia.•••* gnu/packages/gnome.scm (dia): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Roel Janssen2016-05-21
| * build: Fix 'AM_V_at' typo.•••* Makefile.am (hydra-jobs.scm): Fix 'AM_V_at' typo. Mathieu Lirzin2016-05-21
| * grafts: Rename files whose name matches a graft.•••Fixes <http://bugs.gnu.org/23132>. Reported by Mark H Weaver <mhw@netris.org>. * guix/build/graft.scm (rename-matching-files): New procedure. (rewrite-directory): Use it. * tests/grafts.scm ("graft-derivation, renaming"): New test. Ludovic Courtès2016-05-21
| * grafts: Preserve empty directories when grafting.•••* guix/build/graft.scm (rewrite-directory)[rewrite-leaf]: Add case for 'directory. Pass #:directories? #t to 'find-files'. Ludovic Courtès2016-05-21
| * substitute: Gracefully handle invalid store file names.•••Before, something like: echo have /gnu/foo | ./test-env guix substitute --query would lead to an ugly backtrace. * guix/scripts/substitute.scm (narinfo-cache-file): Call 'leave' when 'store-hash-part' returns #f. Ludovic Courtès2016-05-21
| * graph: Allow store file names for 'derivation' and 'references' graphs.•••* guix/scripts/graph.scm (%derivation-node-type)[convert]: Add 'derivation-path?' and catch-all clauses. (%reference-node-type)[convert]: Add 'store-path?' and catch-all clauses. (assert-package, nodes-from-package): New procedures. (%package-node-type, %bag-node-type,%bag-with-origins-node-type) (%bag-emerged-node-type): Add 'convert' field (guix-graph): Rename 'packages' to 'items' and allow 'store-path?' arguments. * guix/graph.scm (<node-type>)[convert]: Adjust comment. * doc/guix.texi (Invoking guix graph): Document it. Ludovic Courtès2016-05-21
| * derivations: 'derivation' sorts items in the resulting object.•••* guix/derivations.scm (derivation-input<?): New procedure. (write-derivation)[coalesce-duplicate-inputs]: Remove. Remove calls to 'sort'. (coalesce-duplicate-inputs): New procedure. (derivation-hash): Sort INPUTS and use 'coalesce-duplicate-inputs'. (derivation)[input->derivation-input] [coalesce-duplicate-inputs]: New procedures. Sort OUTPUTS, INPUTS, and ENV-VARS. * tests/derivations.scm ("read-derivation vs. derivation"): New test. Ludovic Courtès2016-05-21
| * graph: Use absolute file name canonicalization.•••* guix/scripts/graph.scm (guix-graph): Wrap in 'with-fluids'. Ludovic Courtès2016-05-21
| * gnu: linux-libre: Update to 4.5.5.•••* gnu/packages/linux.scm (linux-libre): Update to 4.5.5. Mark H Weaver2016-05-20
| * gnu: linux-libre-4.4: Update to 4.4.11.•••* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.11. Mark H Weaver2016-05-20
| * ant-build-system: Add unpack phase.•••* guix/build/ant-build-system.scm (unpack): New procedure. (%standard-phases): Use it. Ricardo Wurmus2016-05-20
| * gnu: Add default gcc-objc++.•••* gnu/packages/gcc.scm (gcc-objc++): New variable. Ricardo Wurmus2016-05-20
| * gnu: Add gcc-objc++-4.9.•••* gnu/packages/gcc.scm (gcc-objc++-4.9): New variable. Ricardo Wurmus2016-05-20
| * gnu: Add default gcc-objc.•••* gnu/packages/gcc.scm (gcc-objc): New variable. Ricardo Wurmus2016-05-20
| * gnu: Add gcc-objc-4.9.•••* gnu/packages/gcc.scm (gcc-objc-4.9): New variable. Ricardo Wurmus2016-05-20
| * gnu: r-rcpparmadillo: Update to 0.6.700.6.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.6.700.6.0. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Update to 6.700.6. Ricardo Wurmus2016-05-20
| * gnu: armadillo: Update to 6.700.7.•••* gnu/packages/maths.scm (armadillo): Update to 6.700.7. Ricardo Wurmus2016-05-20
| * gnu: r-genomation: Update to 1.4.2.•••* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.4.2. Ricardo Wurmus2016-05-20
| * gnu: r-jsonlite: Update to 0.9.20.•••* gnu/packages/web.scm (r-jsonlite): Update to 0.9.20. Ricardo Wurmus2016-05-20
| * gnu: r-plotly: Update to 3.6.0.•••* gnu/packages/statistics.scm (r-plotly): Update to 3.6.0. Ricardo Wurmus2016-05-20
| * gnu: r-matrixstats: Update to 0.50.2.•••* gnu/packages/statistics.scm (r-matrixstats): Update to 0.50.2. Ricardo Wurmus2016-05-20
| * gnu: r-r-rsp: Update to 0.30.0.•••* gnu/packages/statistics.scm (r-r-rsp): Update to 0.30.0. Ricardo Wurmus2016-05-20
| * gnu: r-rmarkdown: Update to 0.9.6.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 0.9.6. Ricardo Wurmus2016-05-20
| * gnu: r-plotrix: Update to 3.6-2.•••* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-2. Ricardo Wurmus2016-05-20
| * gnu: r-devtools: Update to 1.11.1.•••* gnu/packages/statistics.scm (r-devtools): Update to 1.11.1. Ricardo Wurmus2016-05-20
| * gnu: r-git2r: Update to 0.15.0.•••* gnu/packages/statistics.scm (r-git2r): Update to 0.15.0. Ricardo Wurmus2016-05-20
| * gnu: r-openssl: Update to 0.9.3.•••* gnu/packages/statistics.scm (r-openssl): Update to 0.9.3. Ricardo Wurmus2016-05-20
| * gnu: r-testthat: Update to 1.0.2.•••* gnu/packages/statistics.scm (r-testthat): Update to 1.0.2. Ricardo Wurmus2016-05-20
| * gnu: r-knitr: Update to 1.13.•••* gnu/packages/statistics.scm (r-knitr): Update to 1.13. Ricardo Wurmus2016-05-20
| * gnu: r-highr: Update to 0.6.•••* gnu/packages/statistics.scm (r-highr): Update to 0.6. Ricardo Wurmus2016-05-20
| * gnu: r-formatr: Update to 1.4.•••* gnu/packages/statistics.scm (r-formatr): Update to 1.4. Ricardo Wurmus2016-05-20
| * gnu: r-evaluate: Update to 0.9.•••* gnu/packages/statistics.scm (r-evaluate): Update to 0.9. Ricardo Wurmus2016-05-20
| * gnu: r-bh: Update to 1.60.0-2.•••* gnu/packages/statistics.scm (r-bh): Update to 1.60.0-2. Ricardo Wurmus2016-05-20
| * gnu: r-dbi: Update to 0.4-1.•••* gnu/packages/statistics.scm (r-dbi): Update to 0.4-1. Ricardo Wurmus2016-05-20
| * gnu: r-rcpp: Update to 0.12.5.•••* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.5. Ricardo Wurmus2016-05-20
| * gnu: r-genomicfeatures: Update to 1.24.2.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.2. Ricardo Wurmus2016-05-20
| * gnu: r-summarizedexperiment: Update to 1.2.2.•••* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.2. Ricardo Wurmus2016-05-20
| * gnu: r-biocparallel: Update to 1.6.2.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.2. Ricardo Wurmus2016-05-20
| * gnu: r-annotationdbi: Update to 1.34.2.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.2. Ricardo Wurmus2016-05-20
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