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* gnu: r-limma: Update to 3.48.1.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
* gnu: r-genomeinfodb: Update to 1.28.1.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.1.
* gnu: r-ensembldb: Update to 2.16.2.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.2.
* gnu: r-edaseq: Update to 2.26.1.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/bioconductor.scm (r-edaseq): Update to 2.26.1.
* gnu: r-biocparallel: Update to 1.26.1.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.1.
* gnu: r-biomart: Update to 2.48.2.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.2.
* gnu: r-annotationhub: Update to 3.0.1.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/bioconductor.scm (r-annotationhub): Update to 3.0.1.
* gnu: Add r-ggpp.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/cran.scm (r-ggpp): New variable.
* gnu: Add r-s2.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/cran.scm (r-s2): New variable.
* gnu: Add r-wk.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/cran.scm (r-wk): New variable.
* gnu: Add r-reldist.Ricardo Wurmus2021-07-10
| | | | * gnu/packages/cran.scm (r-reldist): New variable.
* gnu: r-gtools: Update to 3.9.2.Ricardo Wurmus2021-07-10
| | | | | * gnu/packages/statistics.scm (r-gtools): Update to 3.9.2. [arguments]: Remove.
* gnu: r-vdiffr: Update to 1.0.2.Ricardo Wurmus2021-07-10
| | | | | | | | | | | * gnu/packages/cran.scm (r-vdiffr): Update to 1.0.2. [source]: Remove snippet. [arguments]: Remove. [inputs]: Remove freetype and harfbuzz; add libpng and zlib. [propagated-inputs]: Remove r-bh, r-devtools, r-fontquiver, r-freetypeharfbuzz, r-gdtools, r-htmlwidgets, r-purrr, r-r6, r-rcpp, r-shiny, and r-usethis; add r-cpp11 and r-lifecycle. [native-inputs]: Remove esbuild and js-jquery.
* gnu: r-rintrojs: Update to 0.3.0.Ricardo Wurmus2021-07-10
| | | | | | | | * gnu/packages/cran.scm (r-rintrojs): Update to 0.3.0. [source]: Delete minified JavaScript in snippet. [arguments]: Minify with esbuild. [native-inputs]: Replace uglify-js with esbuild; update intro.js to 3.2.1. [license]: Add license of intro.js.
* gnu: qpdfview: Use qt-build-system.Timotej Lazar2021-07-10
| | | | | | | | | | | This fixes compilation after the recent reorganization of qt-build-system. As a side effect, specifying Qt plugins with environment variables now works. * gnu/packages/pdf.scm (qpdfview)[build-system]: Use qt-build-system. [arguments]: Drop #:modules and #:imported-modules, and the 'qt-wrap phase. Specify that there are no tests. Signed-off-by: Leo Famulari <leo@famulari.name>
* gnu: sbcl-generic-cl: Update to 0.9.Pierre Neidhardt2021-07-10
| | | | * gnu/packages/lisp-xyz.scm (sbcl-generic-cl): Update to 0.9.
* gnu: Add cl-form-types.Pierre Neidhardt2021-07-10
| | | | | * gnu/packages/lisp-xyz.scm (cl-form-types, ecl-cl-form-types, sbcl-cl-form-types): New variables.
* gnu: Add ocaml-bibtex2html.Ivan Gankevich2021-07-10
| | | | | | * gnu/packages/ocaml.scm (ocaml-bibtex2html): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
* gnu: Add texlive-preprint.Julien Lepiller2021-07-10
| | | | * gnu/packages/tex.scm (texlive-preprint): New variable.
* gnu: hevea: Update to 2.35.Ivan Gankevich2021-07-10
| | | | | | * gnu/packages/ocaml.scm (hevea): Update to 2.35. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
* gnu: sbcl-cl-gserver: Update to 1.8.0.Pierre Neidhardt2021-07-10
| | | | * gnu/packages/lisp-xyz.scm (sbcl-cl-gserver): Update to 1.8.0.
* gnu: Add netdiscover.Justin Veilleux2021-07-10
| | | | | | * gnu/packages/networking.scm (netdiscover): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
* services: qemu-binfmt: Preserve argv[0] by default.Ludovic Courtès2021-07-10
| | | | | | | | Previously, argv[0] would be replaced by the absolute file name of the executable. This could cause discrepancies, for example in the Coreutils test suite: <https://issues.guix.gnu.org/49485>. * gnu/services/virtualization.scm (<qemu-platform>)[flags]: Default to "FP".
* gnu: go-github-com-golang-snappy: Update to 0.0.4.Arun Isaac2021-07-09
| | | | * gnu/packages/syncthing.scm (go-github-com-golang-snappy): Update to 0.0.4.
* gnu: emacs-dash: Update to 2.19.0.Andrew Tropin2021-07-09
| | | | | | * gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.19.0. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
* gnu: emacs-telega: Fix 'patch-source' phase.Zhu Zihao2021-07-09
| | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-telega)[#:phases]<patch-sources>: Add missing slash in ‘/bin’ when patching general commands. Also patch telega-vvnote.el. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
* self: Remove stale comment about "mmap(PROT_NONE) failed" crash.Ludovic Courtès2021-07-09
| | | | | | | | This crash was fixed by 0aef94e7bcbd272720f14c5343f74da5201ef90a, itself a followup to 47d48f0c43c13c0b43bc3e37b6239efd4bf2f74c. * guix/self.scm (translate-texi-manuals)[build]: Remove reference to the PROT_NONE bug.
* Revert "self: Build translated manuals with a single process."Ludovic Courtès2021-07-09
| | | | | This reverts commit af2d6ec092c98ac5f32d8e9e182a141e1268805b, which the parent commit makes unnecessary.
* doc: Build manual translations with 'guile-3.0-latest'.Ludovic Courtès2021-07-09
| | | | | | | Fixes <https://bugs.gnu.org/47428>. Reported by Leo Famulari <leo@famulari.name>. * doc/build.scm (translated-texi-manuals): Explicitly use 'guile-3.0-latest'.
* gnu: emacs-xyz: Fix indentation.Leo Prikler2021-07-09
| | | | | * gnu/packages/emacs-xyz.scm: Delete trailing newline. (emacs-purescript-mode): Delete trailing space.
* gnu: emacs-telega-server: Update to 0.7.025.Leo Prikler2021-07-09
| | | | * gnu/packages/emacs-xyz.scm (emacs-telega-server): Update to 0.7.025.
* gnu: emacs-telega-contrib: Update to 0.7.024.Zhu Zihao2021-07-09
| | | | | | | | | * gnu/packages/emacs-xyz.scm(emacs-telega-contrib): Update to 0.7.024. [arguments]<#:phases>: Back to root directory of build before phase 'install-license-files' to properly install licenses. [propagated-inputs]: Add emacs-dashboard, emacs-transient. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
* gnu: emacs-telega: Update to 0.7.024.Zhu Zihao2021-07-09
| | | | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-telega): Update to 0.7.024. [build-system] Use emacs-build-system. [arguments] Add #:emacs. Drop outdated phases. Update ‘patch-sources’ phase to find new occurences of ffmpeg to patch. Add new ‘configure’ and ‘install-share-files’ phases. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
* gnu: Add emacs-telega-server.Zhu Zihao2021-07-09
| | | | | | | | | * gnu/packages/emacs-xyz.scm (emacs-telega-server): New variable. * gnu/packages/patches/emacs-telega-path-placeholder.patch: New file. * gnu/package/patches/emacs-telega-patch-server-functions.patch: Remove stale patch. * gnu/local.mk (dist_patch_DATA): Update accordingly. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
* ci: Add bootstrap packages to the core subset.Mathieu Othacehe2021-07-09
| | | | | * gnu/ci.scm (%bootstrap-packages): New variable. (cuirass-jobs): Add it to the core subset.
* system: Provide mg instead of zile.Mathieu Othacehe2021-07-09
| | | | | | | | | Since the update to the 2.6.2 release, the closure size of zile has increased. Switch to mg which is lighter. * gnu/system.scm (%base-packages-interactive): Replace zile by mg. * doc/guix.texi (Proceeding with the Installation, Using the Configuration System): Adapt those sections.
* gnu: python-arrow: Honor #:tests? in 'check' phase.Ludovic Courtès2021-07-09
| | | | | * gnu/packages/time.scm (python-arrow)[arguments]: 'check' phase honors #:tests?.
* gnu: python-arrow: Update to 1.1.1.Kris Fremen2021-07-09
| | | | * gnu/packages/time.scm (python-arrow): Update to 1.1.1.
* gnu: Add repo2docker.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/jupyter.scm (repo2docker): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-pydata-sphinx-theme.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/sphinx.scm (python-pydata-sphinx-theme): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-sphinxcontrib-autoprogram.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/sphinx.scm (python-sphinxcontrib-autoprogram): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-jupyter-sphinx.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/sphinx.scm (python-jupyter-sphinx): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-pytest-regressions.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/check.scm (python-pytest-regressions): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-pytest-datadir.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/check.scm (python-pytest-datadir): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-recommonmark.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/python-xyz.scm (python-recommonmark): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
* gnu: Add python-escapism.Hugo Lecomte2021-07-09
| | | | | | * gnu/packages/python-xyz.scm (python-escapism): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
* gnu: python-seaborn: Update to 0.11.1.Ludovic Courtès2021-07-09
| | | | | | | * gnu/packages/patches/python-seaborn-kde-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to 0.11.1.
* gnu: python-seaborn: Simplify 'start-xserver' phase.Ludovic Courtès2021-07-09
| | | | | * gnu/packages/python-xyz.scm (python-seaborn)[arguments]: In 'start-xserver' phase, assume "Xvfb" is in $PATH.
* gnu: python-seaborn: 'check' phase honors #:tests?.Ludovic Courtès2021-07-09
| | | | | * gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Change 'check' phase to honor #:tests?.
* gnu: mergerfs-tools: Update to 0.0.0-3.3b6fe00.Tobias Geerinckx-Rice2021-07-09
| | | | * gnu/packages/file-systems.scm (mergerfs-tools): Update to 0.0.0-3.3b6fe00.
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