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* gnu: ytnef: Update to 2.1.2.Tobias Geerinckx-Rice2023-07-16
| | | | * gnu/packages/mail.scm (ytnef): Update to 2.1.2.
* gnu: tpacpi-bat: Fix cross-compilation.Tobias Geerinckx-Rice2023-07-16
| | | | | * gnu/packages/linux.scm (tpacpi-bat)[arguments]: Use SEARCH-INPUT-FILE. [inputs]: Add coreutils-minimal.
* gnu: tpacpi-bat: Update to 3.2.Tobias Geerinckx-Rice2023-07-16
| | | | | | * gnu/packages/linux.scm (tpacpi-bat): Update to 3.2. [arguments]: Don't explicitly return #t from phases. linux tpacpi-bat
* tests: lightdm: Bump timeout waiting for screen text to 60 seconds.Maxim Cournoyer2023-07-19
| | | | | | | This is to avoid non-deterministic failures on slower machines. * gnu/tests/lightdm.scm (run-lightdm-test) <wait-for-screen-text>: Bump timeout to 60 s (from the default 30 s).
* tests: xvnc: Fix 'gdm auto-suspend is disabled' test.Maxim Cournoyer2023-07-19
| | | | | | | | | | | | This failure is another collateral from commit a09c7da ("tests: Fork and exec a new Guile for the marionette REPL."), which isolated the marionette evaluation environment from that of the host. * gnu/tests/vnc.scm (run-xvnc-test): Move the (guix build utils) import to... ["gdm auto-suspend is disabled"]: ... inside the marionette-eval of this test. Complete comment. Reported-by: Bruno Victal <mirai@makinata.eu>
* tests: xvnc: Group up GDM test and use GNU Ocrad instead of Tesseract.Bruno Victal2023-07-19
| | | | | | | * gnu/tests/vnc.scm (run-xvnc-test): Group up GDM test. Use GNU Ocrad. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
* tests: gdm: Prefer OCR to delay.Bruno Victal2023-07-19
| | | | | | | * gnu/tests/gdm.scm (run-gdm-test): Use wait-for-screen-text instead of sleep. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
* marionette: Allow passing custom OCR arguments.Bruno Victal2023-07-19
| | | | | | | | * gnu/build/marionette.scm (%default-ocrad-arguments): New variable. (invoke-ocrad-ocr, invoke-tesseract-ocr, marionette-screen-text) [ocr-arguments]: New argument. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
* import/utils: beautify-description: Wrap class names in @code{...}.Ricardo Wurmus2023-07-19
| | | | | | * guix/import/utils.scm (beautify-description): Add procedure to wrap words in @code{...} markup. * tests/import-utils.scm: Add two tests.
* gnu: Add r-qfeatures.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-qfeatures): New variable.
* gnu: Add r-spectra.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-spectra): New variable.
* gnu: Add r-rtcgatoolbox.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-rtcgatoolbox): New variable.
* import/utils: Add more initial words to beautify-description.Ricardo Wurmus2023-07-19
| | | | | * guix/import/utils.scm (beautify-description): Add "Classes" and "Tools" to initial words to be prefixed with "This package provides".
* gnu: Add r-gwastools.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-gwastools): New variable.
* gnu: Add r-beadarray.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-beadarray): New variable.
* gnu: Add r-beaddatapackr.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-beaddatapackr): New variable.
* gnu: Add r-ucell.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-ucell): New variable.
* gnu: Add r-tcgautils.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-tcgautils): New variable.
* gnu: Add r-globalancova.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-globalancova): New variable.
* gnu: Add r-seqarray.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-seqarray): New variable.
* gnu: Add r-nebulosa.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-nebulosa): New variable.
* gnu: Add r-ggtreeextra.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-ggtreeextra): New variable.
* gnu: Add r-survcomp.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-survcomp): New variable.
* gnu: r-missmethyl: Move out of experiments section.Ricardo Wurmus2023-07-19
| | | | | * gnu/packages/bioconductor.scm (r-missmethyl): Move from experiments section to packages section.
* gnu: r-cellid: Move out of experiments section.Ricardo Wurmus2023-07-19
| | | | | * gnu/packages/bioconductor.scm (r-cellid): Move from experiments section to packages section.
* gnu: Add r-mfuzz.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-mfuzz): New variable.
* gnu: Add r-raggedexperiment.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-raggedexperiment): New variable.
* gnu: Add r-spatialexperiment.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-spatialexperiment): New variable.
* gnu: Add r-singscore.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-singscore): New variable.
* gnu: Add r-plyranges.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-plyranges): New variable.
* gnu: Add r-tkwidgets.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-tkwidgets): New variable.
* gnu: Add r-dyndoc.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-dyndoc): New variable.
* gnu: Add r-genomicdatacommons.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-genomicdatacommons): New variable.
* gnu: Add r-snprelate.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-snprelate): New variable.
* gnu: Add r-enhancedvolcano.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-enhancedvolcano): New variable.
* gnu: Add r-logistf.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/cran.scm (r-logistf): New variable.
* gnu: Add r-formula-tools.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/cran.scm (r-formula-tools): New variable.
* gnu: Add r-operator-tools.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/cran.scm (r-operator-tools): New variable.
* gnu: Add r-uchardet.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/cran.scm (r-uchardet): New variable.
* gnu: Add r-gwasexacthw.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/cran.scm (r-gwasexacthw): New variable.
* gnu: Add r-gsva.Ricardo Wurmus2023-07-19
| | | | * gnu/packages/bioconductor.scm (r-gsva): New variable.
* gnu: cl-usocket: Update to 0.8.6.Andre A. Gomes2023-07-19
| | | | | | * gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.6. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: cl-ndebug: Update to 0.2.0.Andre A. Gomes2023-07-19
| | | | | | * gnu/packages/lisp-xyz.scm (sbcl-ndebug): Update to 0.2.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: cl-lisp-unit2: Update to 0.9.4-0.b5aa17b.Andre A. Gomes2023-07-19
| | | | | | * gnu/packages/lisp-check.scm (sbcl-lisp-unit2): Update to 0.9.4-0.b5aa17b. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: cl-array-utils: Update to 1.2.0-0.29da8fc.Andre A. Gomes2023-07-19
| | | | | | * gnu/packages/lisp-xyz.scm (sbcl-array-utils): Update to 1.2.0-0.29da8fc. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
* gnu: commencement: hurd-minimal-boot0: Update to 0.9.git20230216.Janneke Nieuwenhuizen2023-07-19
| | | | | | | | | | | | | * gnu/packages/commencement.scm (hurd-minimal-boot0): Remove redundant let and package-with-bootstrap-guile. [name]: New field; give proper name. [version]: New field. [source]: Update to 0.9.git20230216, using hurd-headers-boot0' source. [inputs]: Add autoconf-boot0, automake-boot0, gnumach-headers-boot0. [native-inputs]: Add autoconf-boot0, automake-boot0, and gnumach-headers-boot0. * gnu/packages/commencement.scm (hurd-version-boot0, hurd-source-boot0): Remove.
* gnu: commencement: hurd-headers-boot0: Update to 0.9.git20230216.Janneke Nieuwenhuizen2023-07-19
| | | | | | | | | * gnu/packages/commencement.scm (hurd-headers-boot0): Remove redundant outer let and package-with-bootstrap-guile. [name]: New field; give proper name. [version]: New field. [source]: Update to 0.9.git20230216, using git-fetch-from-tarball. [inputs]: Add autoconf-boot0, automake-boot0, gnumach-headers-boot0.
* gnu: mig: Use git-fetch.Josselin Poiret2023-07-19
| | | | | | | | | | Now that we have `git-fetch-from-tarball' to break the cycle in commencement for git-fetch sources, we can finally update mig to use git-fetch to allow `--with-commit' builds. * gnu/packages/hurd.scm (mig)[source]: Use git-fetch again. * gnu/packages/commencement.scm (mig-boot0)[source]: Use git-fetch-from-tarball accordingly.
* gnu: commencement: mig-boot0: Update to 1.8+git20230520.Janneke Nieuwenhuizen2023-07-19
| | | | | | | | | | * gnu/packages/commencement.scm (mig-boot0): Remove redundant outer let. [name]: New field, give proper name. [version]: New field [source]: Update to 1.8+git20230520. [native-inputs]: Add autoconf-boot0, automake-boot0. [inputs]: Add gnumach-headers-boot0.
* gnu: commencement: gnumach-headers-boot0: Update to 1.8+git20221224.Janneke Nieuwenhuizen2023-07-19
| | | | | | | | | * gnu/packages/commencement.scm (gnumach-headers-boot0)[name]: New field; give proper name. [source]: Update to 1.8+git20221224, using git-fetch-from-tarball. [native-inputs]: Add autoconf-boot0, automake-boot0, texinfo-boot0. [arguments]: Add 'patch-compat' phase to allow building hurd-minimal etc, with our out-of-date bootstsrap binaries.
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