| Commit message (Collapse) | Author | Age |
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* gnu/packages/diffoscope (diffoscope)[native-inputs]: Add zstd.
[arguments]: Add add-known-tools phase with support for zstd.
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* gnu/packages/emacs-xyz.scm (emacs-find-file-in-project): Update to 5.7.7.
[arguments]: Modify tests to use ert.
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* gnu/packages/emacs-xyz.scm (emacs-elfeed): Update to 3.3.0.
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* gnu/packages/emacs-xyz.scm (emacs-org-trello): Update to 0.8.1.
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* gnu/packages/emacs-xyz.scm (emacs-jedi): Update to 0.2.8.
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* gnu/packages/emacs-xyz.scm (emacs-ob-ipython): Update to 20180224.
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* gnu/packages/emacs-xyz.scm (emacs-rich-minority): Update to 1.0.3.
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* gnu/packages/emacs-xyz.scm (emacs-paren-face): Update to 1.0.4.
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* gnu/packages/emacs-xyz.scm (emacs-undercover): Update to 0.6.1.
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* gnu/packages/emacs-xyz.scm (emacs-fill-column-indicator): Update to 1.90.
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* gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 2.0.0.
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* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.4.
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* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.2.
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* gnu/packages/diffoscope (diffoscope): Update to 133.
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* gnu/packages/java.scm (abcl): Update to 1.6.0.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/texinfo.scm (info-reader): Fix missing include, introduced by
f5d670606354728a453b8cc962c4f85516007d13.
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* gnu/packages/video.scm (theorafile): New variable.
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* gnu/packages/texinfo.scm (info-reader)[arguments]: Add keep-only-info-reader
phase to inherited texinfo package phases, so that fix-cross-configure phase
is preserved.
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* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0.
[propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree,
r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and
r-tidyselect; remove r-igraph.
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* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
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* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
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* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
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* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
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* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
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* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
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* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
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* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
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* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0.
[propagated-inputs]: Remove r-upsetr.
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* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
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* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
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* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
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* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
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* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
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* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
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* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0.
[propagated-inputs]: Add r-genomicranges.
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* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0.
[propagated-inputs]: Add r-ggplot2.
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* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
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