| Commit message (Collapse) | Author | Age |
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Conflicts:
gnu/packages/algebra.scm
gnu/packages/games.scm
gnu/packages/golang.scm
gnu/packages/kerberos.scm
gnu/packages/mail.scm
gnu/packages/python.scm
gnu/packages/ruby.scm
gnu/packages/scheme.scm
gnu/packages/tex.scm
gnu/packages/tls.scm
gnu/packages/version-control.scm
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* .dir-locals.el (scheme-mode) <with-shepherd-action>: New indentation rule.
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* .dir-locals.el (scheme-mode)[gexp->derivation]: Define indentation rule.
* guix/scripts/pack.scm (debian-archive): New procedure.
(%formats): Register the new deb format.
(show-formats): Add it to the usage string.
* tests/pack.scm (%ar-bootstrap): New variable.
(deb archive with symlinks): New test.
* doc/guix.texi (Invoking guix pack): Document it.
* NEWS: Add news entry.
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* guix/packages.scm (inputs-sans-labels, replace-input): New procedures.
(prepend, replace, modify-inputs): New macros.
* doc/guix.texi (Defining Package Variants): Document 'modify-inputs'.
* dir-locals.el: Add 'modify-inputs' and its keywords.
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* guix/packages.scm (expand-input): Remove 'store', 'system', and
'cross-system' parameters; add #:native?. Rewrite to return
name/gexp-input tuples.
(bag->derivation): Adjust accordingly. Lower (bag-build bag).
(bag->cross-derivation): Ditto. Instead of #:native-drvs and
#:target-drvs, pass #:build-inputs, #:host-inputs, and #:target-inputs.
(%derivation-cache): Remove.
* gnu/packages/bootstrap.scm (raw-build): Turn into a monadic procedure.
* gnu/packages/commencement.scm (glibc-final)[arguments]: Use
'gexp-input' for the #:allowed-references argument.
* guix/build-system/cmake.scm (cmake-build): Remove 'store' parameter.
Switch to the use of gexps and 'gexp->derivation'.
(lower): Remove #:source from 'private-keywords'.
* guix/build-system/glib-or-gtk.scm (glib-or-gtk-build, lower):
Likewise.
* guix/build-system/font.scm (font-build): Likewise.
* guix/build-system/gnu.scm (gnu-build): Likewise, and remove
'canonicalize-reference'.
(gnu-cross-build): Likewise, and expect #:build-inputs, #:host-inputs,
and #:target-inputs instead of #:native-drvs and #:target-drvs.
(lower): Likewise.
* guix/build-system/perl.scm (perl-build, lower): Likewise.
* guix/build-system/python.scm (python-build, lower): Likewise.
* guix/build-system/ruby.scm (ruby-build, lower): Likewise.
* guix/build-system/waf.scm (waf-build, lower): Likewise.
* guix/build-system/trivial.scm (guile-for-build): Remove.
(trivial-build): Remove 'store' parameter, change to gexps.
(trivial-cross-build): Ditto, and change to #:build-inputs & co.
* guix/build-system/cargo.scm (cargo-build): Change to 'gexp->derivation'.
* guix/build-system/copy.scm (copy-build): Likewise.
* guix/build-system/dune.scm (dune-build): Likewise.
* guix/build-system/guile.scm (guile-build, guile-cross-build):
Likewise.
* guix/build-system/meson.scm (meson-build): Likewise.
* guix/build-system/ocaml.scm (ocaml-build): Likewise.
* guix/build-system/scons.scm (scons-build): Likewise.
* guix/build-system/texlive.scm (texlive-build): Likewise.
* guix/build-system/android-ndk.scm (android-ndk-build): Likewise.
* guix/build-system/ant.scm (ant-build): Likewise.
* guix/build-system/asdf.scm (asdf-build/source, asdf-build): Likewise.
* guix/build-system/chicken.scm (chicken-build): Likewise.
* guix/build-system/clojure.scm (clojure-build): Likewise.
(source->output-path, maybe-guile->guile): Remove.
* guix/build-system/dub.scm (dub-build): Likewise.
* guix/build-system/emacs.scm (emacs-build): Likewise.
* guix/build-system/go.scm (go-build): Likewise.
* guix/build-system/haskell.scm (haskell-build): Likewise.
* guix/build-system/julia.scm (julia-build): Likewise.
* guix/build-system/linux-module.scm (linux-module-build)
(linux-module-build-cross): Likewise.
* guix/build-system/maven.scm (maven-build): Likewise.
* guix/build-system/minify.scm (minify-build): Likewise.
* guix/build-system/node.scm (node-build): Likewise.
* guix/build-system/qt.scm (qt-build, qt-cross-build): Likewise.
* guix/build-system/r.scm (r-build): Likewise.
* guix/build-system/rakudo.scm (rakudo-build): Likewise.
* guix/build-system/renpy.scm (renpy-build): Likewise.
* tests/builders.scm ("gnu-build"): Call 'store-lower' on 'gnu-build'.
Pass #:source parameter.
* tests/packages.scm ("search paths"): Use 'abort-to-prompt' instead of
a normal return from the 'build' method.
("package->bag, sensitivity to %current-target-system"): Change 'build'
to match the new build system signature.
squash! build-system: Rewrite using gexps.
squash! build-system: Rewrite using gexps.
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Fixes <https://bugs.gnu.org/44760>.
Previously, the 'register-path' call would re-traverse ITEM to compute
its nar hash, even though that hash is already known in the initial
store. This patch also avoids repeated opening/closing of the
database.
* guix/store/database.scm (call-with-database): Export.
* guix/scripts/system.scm (copy-item): Add 'db' parameter. Call
'sqlite-register' instead of 'register-path'.
(copy-closure): Remove redundant call to 'references*'. Call
'call-with-database' and pass the database to 'copy-item'.
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Conflicts:
gnu/packages/bioinformatics.scm
The python-pysam package fixed in master was kept instead of the update done
in the version-1.2.0 branch.
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Following discussions in <https://issues.guix.gnu.org/43893>, keeping a copy
of the updated package source is desirable when generating a release.
* build-aux/update-guix-package.scm (version-controlled?): Remove variable.
(call-with-temporary-git-worktree): Renamed from
'with-temporary-git-worktree'. Update doc. Do not change directory
implicitly. Define as a procedure, not a syntax.
(keep-source-in-store): New procedure.
(main): Adjust to use with call-with-temporary-git-worktree. Add the sources
to the store when GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT is set. Exit gracefully
when FIND-ORIGIN-REMOTE returns #f.
(%savannah-guix-git-repo-push-url-regexp): Adjust match for a potential colon
separator.
* Makefile.am (GUIX_ALLOW_ME_TO_USE_PRIVATE_COMMIT): Adjust.
* .dir-locals.el (scheme-mode): Remove entry for with-temporary-git-worktree.
* doc/contributing.texi (Updating the Guix Package): Update doc.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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Follow up from 1d6e7732b163c9e945c9e5b32c726fe3b5f09c3a.
* .dir-locals.el: Modify comment to point at the report to bug-gnu-emacs.
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* .dir-locals.el: Use setq-local on guix-directory. While a problem with
using setq hasn't been identified, this seems like good hygiene.
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While this repo should presumably always have a .dir-locals.el
by the nature of this file itself, it seems that this behavior "leaks".
See added comment for more details on the fix to this strange bug,
which is likely an upstream emacs or vc-mode issue.
Thanks to Miguel Ángel Arruga Vivas and Maxim Cournoyer for helping
investigate this problem.
* .dir-locals.el: Don't error out if .dir-locals.el isn't found.
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* .dir-locals.el (nil)<Geiser>: Load cl-lib when needed.
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Thanks to Miguel Ángel Arruga Vivas and Pierre Neidhardt for their suggestions
and improvements.
* .dir-locals.el: Set the GUIX-DIRECTORY and GEISER-GUILE-LOAD-PATH Emacs
variables based on the location of the .dir-locals file.
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Fixes <https://issues.guix.gnu.org/43893>.
This changes the 'update-guix-package' tool so that it:
1. Always uses a clean checkout to compute the hash of the updated 'guix'
package.
2. Ensures the commit used in the updated 'guix' package definition has already
been pushed upstream.
* build-aux/update-guix-package.scm (%savannah-guix-git-repo-push-url): New
variable.
(with-input-pipe-to-string, with-temporary-git-worktree): New syntaxes.
(find-origin-remote, git-add-worktree): New procedures.
(commit-already-pushed?): New predicate.
(main): Check the commit used has already been pushed upstream and compute the
hash from a clean checkout.
* doc/contributing.texi (Updating the Guix Package): Document it.
* .dir-locals.el (scheme-mode): Fix indentation of with-temporary-git-worktree.
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This causes with-writable-file to take into consideration the actual store
being used, as passed to 'deduplicate', rather than
whatever (%store-directory) may return.
* guix/store/deduplication.scm (replace-with-link): new keyword argument
'store'. Pass to with-writable-file.
(with-writable-file, call-with-writable-file): new store argument.
(deduplicate): pass store to replace-with-link.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* .dir-locals.el (call-with-transaction, call-with-retrying-transaction):
change scheme-indent-function property from 2 to 1.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* .dir-locals.el (scheme-mode): Add 'package/inherit'.
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Suggested by Caleb Ristvedt <caleb.ristvedt@cune.org>.
* guix/store/deduplication.scm (call-with-writable-file): New procedure.
(with-writable-file): New macro.
(replace-with-link): Use it.
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Fixes <https://bugs.gnu.org/22883>.
* guix/channels.scm (<channel>)[introduction]: New field.
(<channel-introduction>): New record type.
(%guix-channel-introduction): New variable.
(%default-channels): Use it.
(<channel-metadata>)[keyring-reference]: New field.
(%default-keyring-reference): New variable.
(read-channel-metadata, read-channel-metadata-from-source): Initialize
the 'keyring-reference' field.
(commit-short-id, verify-introductory-commit)
(authenticate-channel): New procedures.
(latest-channel-instance): Call 'authenticate-channel' when CHANNEL has
an introduction.
* tests/channels.scm (gpg+git-available?, commit-id-string): New
procedures.
("authenticate-channel, wrong first commit signer"):
("authenticate-channel, .guix-authorizations"): New tests.
* doc/guix.texi (Invoking guix pull): Mention authentication.
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Previously call-with-transaction would both retry when SQLITE_BUSY errors were
thrown and do what its name suggested (start and rollback/commit a
transaction). This changes it to do only what its name implies, which
simplifies its implementation. Retrying is provided by the new
call-with-SQLITE_BUSY-retrying procedure.
* guix/store/database.scm (call-with-transaction): no longer restarts, new
#:restartable? argument controls whether "begin" or "begin immediate" is
used.
(call-with-SQLITE_BUSY-retrying, call-with-retrying-transaction,
call-with-retrying-savepoint): new procedures.
(register-items): use call-with-retrying-transaction to preserve old
behavior.
* .dir-locals.el (call-with-retrying-transaction,
call-with-retrying-savepoint): add indentation information.
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update-or-insert can break if an insert occurs between when it decides whether
to update or insert and when it actually performs that operation. Putting the
check and the update/insert operation in the same transaction ensures that the
update/insert will only succeed if no other write has occurred in the middle.
* guix/store/database.scm (call-with-savepoint): new procedure.
(update-or-insert): use call-with-savepoint to ensure the read and the
insert/update occur within the same transaction.
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Most of our queries would fail to finalize their statements properly if sqlite
returned an error during their execution. This resolves that, and also makes
them somewhat more concise as a side-effect.
This also makes some small changes to improve certain queries where behavior
was strange or overly verbose.
* guix/store/database.scm (call-with-statement): new procedure.
(with-statement): new macro.
(last-insert-row-id, path-id, update-or-insert, add-references): rewrite to
use with-statement.
(update-or-insert): factor last-insert-row-id out of the end of both
branches.
(add-references): remove pointless last-insert-row-id call.
* .dir-locals.el (with-statement): add indenting information.
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* guix/ui.scm (call-with-paginated-output-port): New procedure.
(with-paginated-output-port): New macro.
(display-search-results): Use it instead of displaying a hint.
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* guix/tests/git.scm (call-with-environment-variables)
(with-environment-variables): Remove.
* guix/tests/git.scm (populate-git-repository): Add clauses for signed
commits and signed merges.
* guix/tests/gnupg.scm: New file.
* tests/git-authenticate.scm: New file.
* tests/ed25519bis.key, tests/ed25519bis.sec: New files.
* Makefile.am (dist_noinst_DATA): Add 'guix/tests/gnupg.scm'.
(SCM_TESTS): Add 'tests/git-authenticate.scm'.
(EXTRA_DIST): Add tests/ed25519bis.{key,sec}.
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* guix/gexp.scm (<system-binding>): New record type.
(let-system): New macro.
(system-binding-compiler): New procedure.
(default-expander): Add 'self-quoting?' case.
(self-quoting?): New procedure.
(lower-inputs): Add 'filterm'. Pass the result of
'mapm/accumulate-builds' through FILTERM.
(gexp->sexp)[self-quoting?]: Remove.
* tests/gexp.scm ("let-system", "let-system, target")
("let-system, ungexp-native, target")
("let-system, nested"): New tests.
* doc/guix.texi (G-Expressions): Document it.
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* guix/store.scm (current-build-prompt): New variable.
(call-with-build-handler, invoke-build-handler): New procedures.
(with-build-handler): New macro.
* tests/store.scm ("with-build-handler"): New test.
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* guix/gexp.scm (<parameterized>): New record type.
(with-parameters): New macro.
(compile-parameterized): New gexp compiler.
* tests/gexp.scm ("with-parameters for %current-system")
("with-parameters for %current-target-system")
("with-parameters + file-append"): New tests.
* doc/guix.texi (G-Expressions): Document it.
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* guix/ui.scm (profile-lock-handler, profile-lock-file): New
procedures.
(with-profile-lock): New macro.
* guix/scripts/package.scm (process-actions): Use 'with-profile-lock'
instead of 'with-file-lock/no-wait'.
* guix/scripts/pull.scm (guix-pull): Likewise.
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This is a followup to b1fb663404894268b5ee92c040f12c52c0bee425.
* guix/scripts/pull.scm (guix-pull): Wrap 'run-with-store' call in
'with-file-lock/no-wait'.
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* guix/git.scm (commit-closure, commit-difference): New procedures.
* guix/tests/git.scm, tests/git.scm: New files.
* Makefile.am (dist_noinst_DATA): Add guix/tests/git.scm.
(SCM_TESTS): Add tests/git.scm.
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* guix/scripts/offload.scm (lock-file, unlock-file, with-file-lock):
Move to...
* guix/build/syscalls.scm: ... here.
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* guix/scripts/publish.scm (show-help, %options): Support '-C METHOD'
and '-C METHOD:LEVEL'.
(default-compression): New procedure.
(bake-narinfo+nar): Add lzip.
(nar-response-port): Likewise.
(string->compression-type): New procedure.
(make-request-handler): Generalize /nar/gzip handler to handle /nar/lzip
as well.
* tests/publish.scm ("/nar/lzip/*"): New test.
("/*.narinfo with lzip compression"): New test.
* doc/guix.texi (Invoking guix publish): Document it.
(Requirements): Mention lzlib.
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* guix/store/database.scm (SQLITE_BUSY, register-output-sql): New variables.
(add-references): Don't try finalizing after each use, only after all the
uses (otherwise a finalized statement would be used if #:cache? was #f).
(call-with-transaction): New procedure.
(register-items): Use call-with-transaction to prevent broken intermediate
states from being visible.
* .dir-locals.el (call-with-transaction): indent it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/status.scm (logger-for-level, call-with-status-verbosity): New
procedures.
(with-status-verbosity): New macro.
* guix/scripts/environment.scm (guix-environment): Use
'with-status-verbosity' instead of 'with-status-report'.
* guix/scripts/pack.scm (guix-pack): Likewise.
* guix/scripts/package.scm (guix-package): Likewise.
* guix/scripts/pull.scm (guix-pull): Likewise.
* guix/scripts/system.scm (guix-system): Likewise.
* build-aux/run-system-tests.scm (run-system-tests): Likewise.
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Fixes <https://bugs.gnu.org/32184>.
* guix/tests.scm (call-with-external-store): New procedure.
(with-external-store): New macro.
* tests/pack.scm (%store): Remove.
(test-assertm): Add 'store' parameter.
("self-contained-tarball"): Wrap in 'with-external-store'.
* tests/guix-pack.sh: Connect to the external store, if possible, by
setting NIX_STORE_DIR and GUIX_DAEMON_SOCKET. Remove most uses of
'--bootstrap'.
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* guix/progress.scm (progress-reporter/trace): New procedure.
(%progress-interval): New variable.
(progress-reporter/file): Use it.
* guix/scripts/build.scm (set-build-options-from-command-line): Pass
#:print-extended-build-trace?.
(%default-options): Add 'print-extended-build-trace?'.
(guix-build): Parameterize CURRENT-TERMINAL-COLUMNS. Use
'build-status-updater'.
* guix/scripts/environment.scm (%default-options): Add
'print-extended-build-trace?'.
(guix-environment): Wrap body in 'with-status-report'.
* guix/scripts/pack.scm (%default-options): Add 'print-build-trace?' and
'print-extended-build-trace?'.
(guix-pack): Wrap body in 'with-status-report'.
* guix/scripts/package.scm (%default-options, guix-package): Likewise.
* guix/scripts/system.scm (%default-options, guix-system): Likewise.
* guix/scripts/pull.scm (%default-options, guix-pull): Likewise.
* guix/scripts/substitute.scm (progress-report-port): Don't call STOP
when TOTAL is zero.
(process-substitution): Add #:print-build-trace? and honor it.
(guix-substitute)[print-build-trace?]: New variable.
Pass #:print-build-trace? to 'process-substitution'.
* guix/status.scm: New file.
* guix/store.scm (set-build-options): Add #:print-extended-build-trace?;
pass it into PAIRS.
(%protocol-version): Bump.
(protocol-version, nix-server-version): New procedures.
(current-store-protocol-version): New variable.
(with-store, build-things): Parameterize it.
* guix/ui.scm (build-output-port): Remove.
(colorize-string): Export.
* po/guix/POTFILES.in: Add guix/status.scm.
* tests/status.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
* nix/libstore/worker-protocol.hh (PROTOCOL_VERSION): Bump to 0x162.
* nix/libstore/build.cc (DerivationGoal::registerOutputs)
(SubstitutionGoal::finished): Print a "@ hash-mismatch" trace before
throwing.
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* guix/config.scm.in (%store-database-directory): New variable.
* guix/store/database.scm: New file.
* tests/store-database.scm: New file.
* Makefile.am (STORE_MODULES): New variable.
(MODULES, MODULES_NOT_COMPILED): Adjust accordingly.
(SCM_TESTS) [HAVE_GUILE_SQLITE3]: Add tests/store-database.scm.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* guix/gexp.scm (<gexp>)[extensions]: New field.
(gexp-attribute): New procedure.
(gexp-modules): Write in terms of 'gexp-attribute'.
(gexp-extensions): New procedure.
(gexp->derivation): Add #:effective-version.
[extension-flags]: New procedure.
Honor extensions of EXP.
(current-imported-extensions): New syntax parameter.
(with-extensions): New macro.
(gexp): Honor CURRENT-IMPORTED-EXTENSIONS.
(compiled-modules): Add #:extensions and honor it.
(load-path-expression): Likewise.
(gexp->script, gexp->file): Honor extensions.
* tests/gexp.scm (%extension-package): New variable.
("gexp-extensions & ungexp")
("gexp-extensions & ungexp-splicing")
("gexp-extensions and literal Scheme object")
("gexp->derivation & with-extensions")
("program-file & with-extensions"): New tests.
* doc/guix.texi (G-Expressions): Document 'with-extensions'.
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* gnu/services/base.scm (<guix-configuration>)[log-compression]: New
field.
(guix-shepherd-service): Use 'match-record' instead of 'match'. Honor
'log-compression'.
* doc/guix.texi (Base Services): Document 'log-compression'.
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* guix/progress.scm (start-progress-reporter!, stop-progress-reporter!)
(progress-reporter-report!): New procedures.
* guix/scripts/weather.scm (call-with-progress-reporter): New procedure.
(package-outputs)[update-progress!]: Remove.
Use 'call-with-progress-reporter' instead.
(guix-weather): Parameterize 'current-terminal-columns'.
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Fixes <http://bugs.gnu.org/26949>.
Reported by Pjotr Prins <pjotr.public12@thebird.nl>.
* guix/build/union.scm (file-is-directory?): Return #f when FILE does
not exist or is a dangling symlink.
(file=?): Pass #f as a second argument to 'stat'; return #f when both
ST1 or ST2 is #f.
* tests/profiles.scm (test-equalm): New macro.
("union vs. dangling symlink"): New test.
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* .dir-locals.el: Add indentation rules for 'replace', 'add-before' and
'add-after'.
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* guix/workers.scm, tests/workers.scm: New files.
* Makefile.am (MODULES, SCM_TESTS): Add them.
* .dir-locals.el: Add rule for 'eventually'.
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* guix/combinators.scm (memoize): Remove.
* guix/memoization.scm: New file.
* Makefile.am (MODULES): Add it.
* gnu/packages.scm, gnu/packages/bootstrap.scm,
guix/build-system/gnu.scm, guix/build-system/python.scm,
guix/derivations.scm, guix/gnu-maintenance.scm,
guix/import/cran.scm, guix/import/elpa.scm,
guix/modules.scm, guix/scripts/build.scm,
guix/scripts/graph.scm, guix/scripts/lint.scm,
guix/store.scm, guix/utils.scm: Adjust imports accordingly.
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Users using a non-English environment may have set this to `nil´, which
leads to fill-paragraph removing the second space.
* .dir-locals.el: Set sentence-end-double-space to true.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* guix/zlib.scm, tests/zlib.scm: New files.
* Makefile.am (MODULES): Add guix/zlib.scm.
(SCM_TESTS): Add tests/zlib.scm.
* m4/guix.m4 (GUIX_LIBGCRYPT_LIBDIR): New macro.
* configure.ac (LIBGCRYPT_LIBDIR): Use it. Define and substitute
'LIBZ'.
* guix/config.scm.in (%libz): New variable.
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* guix/gexp.scm (<gexp>)[modules]: New field.
(gexp-modules): New procedure.
(gexp->derivation): Use it and append the result to %MODULES.
Update docstring to mark #:modules as deprecated.
(current-imported-modules, with-imported-modules): New macros.
(gexp): Pass CURRENT-IMPORTED-MODULES as second argument to 'gexp'.
(gexp->script): Use and honor 'gexp-modules'; define '%modules'.
* tests/gexp.scm ("gexp->derivation & with-imported-modules")
("gexp->derivation & nested with-imported-modules")
("gexp-modules & ungexp", "gexp-modules & ungexp-splicing"):
New tests.
("program-file"): Use 'with-imported-modules'. Remove #:modules
argument to 'program-file'.
* doc/guix.texi (G-Expressions): Document 'with-imported-modules'.
Mark #:modules of 'gexp->derivation' as deprecated.
* emacs/guix-devel.el: Add syntax for 'with-imported-modules'.
(guix-devel-keywords): Add it.
* .dir-locals.el: Likewise.
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* gnu/services.scm (%modify-service, modify-services): New macros.
* gnu/services/base.scm (mingetty-service-type, guix-service-type):
Export.
* emacs/guix-devel.el (guix-devel-keywords): Add 'modify-services'.
Ditto in 'guix-devel-scheme-indent' call.
* doc/guix.texi (Using the Configuration System): Give an example of
'modify-services'.
(Service Reference): Document it.
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* gnu/build/linux-container.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* .dir-locals.el: Add Scheme indent rules for 'call-with-container', and
'container-excursion'.
* tests/containers.scm: New file.
* Makefile.am (SCM_TESTS): Add it.
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