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-rw-r--r--gnu/packages/bioinformatics.scm14
1 files changed, 6 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 42c90ea949..87f15fc7f2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2325,23 +2325,21 @@ files. The code was previously part of the cutadapt tool.")
(define-public cutadapt
(package
(name "cutadapt")
- (version "1.18")
+ (version "2.1")
(source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/marcelm/cutadapt.git")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
+ (method url-fetch)
+ (uri (pypi-uri "cutadapt" version))
(sha256
(base32
- "08bbfwyc0kvcd95jf2s95xiv9s3cbsxm39ydl0qck3fw3cviwxpg"))))
+ "1vqmsfkm6llxzmsz9wcfcvzx9a9f8iabvwik2rbyn7nc4wm25z89"))))
(build-system python-build-system)
(inputs
`(("python-dnaio" ,python-dnaio)
("python-xopen" ,python-xopen)))
(native-inputs
`(("python-cython" ,python-cython)
- ("python-pytest" ,python-pytest)))
+ ("python-pytest" ,python-pytest)
+ ("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "https://cutadapt.readthedocs.io/en/stable/")
(synopsis "Remove adapter sequences from nucleotide sequencing reads")
(description