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-rw-r--r--gnu/local.mk2
-rw-r--r--gnu/packages/autotools.scm4
-rw-r--r--gnu/packages/bioinformatics.scm4
-rw-r--r--gnu/packages/compression.scm16
-rw-r--r--gnu/packages/embedded.scm1
-rw-r--r--gnu/packages/guile.scm3
-rw-r--r--gnu/packages/haskell.scm22
-rw-r--r--gnu/packages/idris.scm5
-rw-r--r--gnu/packages/libffcall.scm1
-rw-r--r--gnu/packages/mail.scm4
-rw-r--r--gnu/packages/package-management.scm6
-rw-r--r--gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch81
-rw-r--r--gnu/packages/patches/chicken-CVE-2017-6949.patch132
-rw-r--r--gnu/packages/perl-web.scm4
-rw-r--r--gnu/packages/python.scm36
-rw-r--r--gnu/packages/rust.scm20
-rw-r--r--gnu/packages/scheme.scm16
-rw-r--r--gnu/packages/video.scm4
18 files changed, 218 insertions, 143 deletions
diff --git a/gnu/local.mk b/gnu/local.mk
index 4d85f15a06..f02967233f 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -506,7 +506,7 @@ dist_patch_DATA = \
%D%/packages/patches/calibre-drop-unrar.patch \
%D%/packages/patches/calibre-no-updates-dialog.patch \
%D%/packages/patches/cdparanoia-fpic.patch \
- %D%/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch \
+ %D%/packages/patches/chicken-CVE-2017-6949.patch \
%D%/packages/patches/chmlib-inttypes.patch \
%D%/packages/patches/clang-libc-search-path.patch \
%D%/packages/patches/clang-3.8-libc-search-path.patch \
diff --git a/gnu/packages/autotools.scm b/gnu/packages/autotools.scm
index 442c87c1f1..e933973489 100644
--- a/gnu/packages/autotools.scm
+++ b/gnu/packages/autotools.scm
@@ -165,7 +165,7 @@ exec ~a --no-auto-compile \"$0\" \"$@\"
(define-public autoconf-archive
(package
(name "autoconf-archive")
- (version "2016.09.16")
+ (version "2017.03.21")
(source
(origin
(method url-fetch)
@@ -173,7 +173,7 @@ exec ~a --no-auto-compile \"$0\" \"$@\"
version ".tar.xz"))
(sha256
(base32
- "10mxz9hfnfz66m1l9s28sbyfb9a04akz92wkyv9blhpq6p9fzwp8"))))
+ "0rfpapadka2023qhy8294ca5awxpb8d4904js6kv7piby5ax8siq"))))
(build-system gnu-build-system)
(home-page "https://www.gnu.org/software/autoconf-archive")
(synopsis "Collection of freely reusable Autoconf macros")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 97380fc032..232c7db838 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5051,7 +5051,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.")
(define-public star
(package
(name "star")
- (version "2.5.2b")
+ (version "2.5.3a")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/alexdobin/STAR/archive/"
@@ -5059,7 +5059,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1na6np880r1zaamiy00hy8bid5anpy0kgf63587v2yl080krk2zq"))
+ "013wirlz8lllgjyagl48l75n1isxyabqb3sj7qlsl0x1rmvqw99a"))
(modules '((guix build utils)))
(snippet
'(begin
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 576a70af75..6f5f584822 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -596,7 +596,7 @@ decompression of some loosely related file formats used by Microsoft.")
(define-public perl-compress-raw-bzip2
(package
(name "perl-compress-raw-bzip2")
- (version "2.068")
+ (version "2.074")
(source
(origin
(method url-fetch)
@@ -604,7 +604,7 @@ decompression of some loosely related file formats used by Microsoft.")
"Compress-Raw-Bzip2-" version ".tar.gz"))
(sha256
(base32
- "16hl58xppckldz05zdyid1l5gpaykzwvkq682h3rc3nilbhgjqqg"))))
+ "0b5jwqf15zr787acnx8sfyy2zavdd7gfkd98n1dgy8fs6r8yb8a4"))))
(build-system perl-build-system)
;; TODO: Use our bzip2 package.
(home-page "http://search.cpan.org/dist/Compress-Raw-Bzip2")
@@ -616,7 +616,7 @@ compression library.")
(define-public perl-compress-raw-zlib
(package
(name "perl-compress-raw-zlib")
- (version "2.068")
+ (version "2.074")
(source
(origin
(method url-fetch)
@@ -624,7 +624,7 @@ compression library.")
"Compress-Raw-Zlib-" version ".tar.gz"))
(sha256
(base32
- "06q7n87g26nn5gv4z2p31ca32f6zk124hqxc25rfgkjd3qi5798i"))))
+ "08bpx9v6i40n54rdcj6invlj294z20amrl8wvwf9b83aldwdwsd3"))))
(build-system perl-build-system)
(inputs
`(("zlib" ,zlib)))
@@ -651,7 +651,7 @@ compression library.")
(define-public perl-io-compress
(package
(name "perl-io-compress")
- (version "2.068")
+ (version "2.074")
(source
(origin
(method url-fetch)
@@ -659,11 +659,11 @@ compression library.")
"IO-Compress-" version ".tar.gz"))
(sha256
(base32
- "0dy0apjp7j9dfkzfjspjd3z9gh26srx5vac72g59bkkz1jf8s1gs"))))
+ "1wlpy2026djfmq0bjync531yq6s695jf7bcnpvjphrasi776igdl"))))
(build-system perl-build-system)
(propagated-inputs
- `(("perl-compress-raw-zlib" ,perl-compress-raw-zlib) ; >=2.068
- ("perl-compress-raw-bzip2" ,perl-compress-raw-bzip2))) ; >=2.068
+ `(("perl-compress-raw-zlib" ,perl-compress-raw-zlib) ; >=2.074
+ ("perl-compress-raw-bzip2" ,perl-compress-raw-bzip2))) ; >=2.074
(home-page "http://search.cpan.org/dist/IO-Compress")
(synopsis "IO Interface to compressed files/buffers")
(description "IO-Compress provides a Perl interface to allow reading and
diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm
index 222278009d..0e86478bd3 100644
--- a/gnu/packages/embedded.scm
+++ b/gnu/packages/embedded.scm
@@ -732,6 +732,7 @@ simulator.")
(uri (git-reference
(url "https://github.com/puppeh/binutils-vc4.git")
(commit commit)))
+ (file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"1kdrz6fki55lm15rwwamn74fnqpy0zlafsida2zymk76n3656c63"))))
diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index b621d8274d..0e75e026b5 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -247,6 +247,9 @@ without requiring the source code to be rewritten.")
(files '("lib/guile/2.2/site-ccache"
"share/guile/site/2.2")))))))
+(define-public guile-next
+ (deprecated-package "guile-next" guile-2.2))
+
(define (guile-variant-package-name prefix)
(lambda (name)
"Return NAME with PREFIX instead of \"guile-\", when applicable."
diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 2415881e8e..d48983a81a 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -9,6 +9,7 @@
;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017 David Craven <david@craven.ch>
;;; Copyright © 2017 Danny Milosavljevic <dannym@scratchpost.org>
+;;; Copyright © 2017 Peter Mikkelsen <petermikkelsen10@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -562,6 +563,27 @@ package.")
package.")
(license license:bsd-3)))
+(define-public ghc-code-page
+ (package
+ (name "ghc-code-page")
+ (version "0.1.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append
+ "https://hackage.haskell.org/package/code-page/code-page-"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1491frk4jx6dlhifky9dvcxbsbcfssrz979a5hp5zn061rh8cp76"))))
+ (build-system haskell-build-system)
+ (home-page "https://github.com/RyanGlScott/code-page")
+ (synopsis "Windows code page library for Haskell")
+ (description "A cross-platform library with functions for adjusting
+code pages on Windows. On all other operating systems, the library does
+nothing.")
+ (license license:bsd-3)))
+
(define-public ghc-haddock-library
(package
(name "ghc-haddock-library")
diff --git a/gnu/packages/idris.scm b/gnu/packages/idris.scm
index 02198a5a7d..2b7f4cc9dd 100644
--- a/gnu/packages/idris.scm
+++ b/gnu/packages/idris.scm
@@ -31,7 +31,7 @@
(define-public idris
(package
(name "idris")
- (version "0.99")
+ (version "0.99.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -39,7 +39,7 @@
"idris-" version "/idris-" version ".tar.gz"))
(sha256
(base32
- "1sd4vy5rx0mp32xj99qijhknkgw4d2rxvz6wiy3pym6kaqmc497i"))))
+ "12kw452arnl5ldip2x749j5np3l40bv7asqdv9w0f60j45hii40r"))))
(build-system haskell-build-system)
(inputs
`(("gmp" ,gmp)
@@ -53,6 +53,7 @@
("ghc-blaze-html" ,ghc-blaze-html)
("ghc-blaze-markup" ,ghc-blaze-markup)
("ghc-cheapskate" ,ghc-cheapskate)
+ ("ghc-code-page" ,ghc-code-page)
("ghc-fingertree" ,ghc-fingertree)
("ghc-fsnotify" ,ghc-fsnotify)
("ghc-ieee754" ,ghc-ieee754)
diff --git a/gnu/packages/libffcall.scm b/gnu/packages/libffcall.scm
index 5e12c6b160..6ff40c8a10 100644
--- a/gnu/packages/libffcall.scm
+++ b/gnu/packages/libffcall.scm
@@ -36,6 +36,7 @@
":pserver:anonymous@cvs.savannah.gnu.org:/sources/libffcall")
(module "ffcall")
(revision "2015-01-15")))
+ (file-name (string-append name "-" version "-checkout"))
(sha256
(base32
"1lwdskc2w4rr98x9flr2726lmj4190l16r0izg7gqxy50801wwgd"))))
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 369fb69d9b..53a8632947 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -1080,7 +1080,7 @@ facilities for checking incoming mail.")
(define-public dovecot
(package
(name "dovecot")
- (version "2.2.27")
+ (version "2.2.28")
(source
(origin
(method url-fetch)
@@ -1088,7 +1088,7 @@ facilities for checking incoming mail.")
(version-major+minor version) "/"
name "-" version ".tar.gz"))
(sha256 (base32
- "1s8qvr6fa9d0n179kdwgpsi72zkvpbh9q57q8fr2fjysgjl94zw9"))))
+ "098zpkmkk93372qnv6drgbfg8hp5mynspzc1735qgar6wdcqya70"))))
(build-system gnu-build-system)
(native-inputs
`(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index f675e22ad9..cabfc862ac 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -214,9 +214,9 @@ the Nix package manager.")
;;
;; Note: use a very short commit id; with a longer one, the limit on
;; hash-bang lines would be exceeded while running the tests.
- (let ((commit "1162418ee88f155f6b14fd8926479c2176e40e76"))
+ (let ((commit "73a46451af333c77d2e79aa8764f51be8c34d1ae"))
(package (inherit guix-0.12.0)
- (version (string-append "0.12.0-5." (string-take commit 4)))
+ (version (string-append "0.12.0-6." (string-take commit 4)))
(source (origin
(method git-fetch)
(uri (git-reference
@@ -226,7 +226,7 @@ the Nix package manager.")
(commit commit)))
(sha256
(base32
- "16pxqbywhayazdgg9l19frigncmyq20j5fvaq4zgvm0iidndhfja"))
+ "1zfa6c1vf52rg7ba1nrz4hzgdwl16brc4iylcdnhl9mnkjg2fbr5"))
(file-name (string-append "guix-" version "-checkout"))))
(arguments
(substitute-keyword-arguments (package-arguments guix-0.12.0)
diff --git a/gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch b/gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch
deleted file mode 100644
index 59decde0e9..0000000000
--- a/gnu/packages/patches/chicken-CVE-2016-6830+CVE-2016-6831.patch
+++ /dev/null
@@ -1,81 +0,0 @@
-diff -ur a/irregex-core.scm b/irregex-core.scm
---- a/irregex-core.scm 2016-09-11 19:03:00.000000000 -0400
-+++ b/irregex-core.scm 2017-01-01 22:24:08.000000000 -0500
-@@ -30,6 +30,8 @@
-
- ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
- ;;;; History
-+;; 0.9.6: 2016/12/05 - fixed exponential memory use of + in compilation
-+;; of backtracking matcher.
- ;; 0.9.5: 2016/09/10 - fixed a bug in irregex-fold handling of bow
- ;; 0.9.4: 2015/12/14 - performance improvement for {n,m} matches
- ;; 0.9.3: 2014/07/01 - R7RS library
-@@ -3170,16 +3172,7 @@
- ((sre-empty? (sre-sequence (cdr sre)))
- (error "invalid sre: empty *" sre))
- (else
-- (letrec
-- ((body
-- (lp (sre-sequence (cdr sre))
-- n
-- flags
-- (lambda (cnk init src str i end matches fail)
-- (body cnk init src str i end matches
-- (lambda ()
-- (next cnk init src str i end matches fail)
-- ))))))
-+ (let ((body (rec (list '+ (sre-sequence (cdr sre))))))
- (lambda (cnk init src str i end matches fail)
- (body cnk init src str i end matches
- (lambda ()
-@@ -3204,10 +3197,21 @@
- (lambda ()
- (body cnk init src str i end matches fail))))))))
- ((+)
-- (lp (sre-sequence (cdr sre))
-- n
-- flags
-- (rec (list '* (sre-sequence (cdr sre))))))
-+ (cond
-+ ((sre-empty? (sre-sequence (cdr sre)))
-+ (error "invalid sre: empty +" sre))
-+ (else
-+ (letrec
-+ ((body
-+ (lp (sre-sequence (cdr sre))
-+ n
-+ flags
-+ (lambda (cnk init src str i end matches fail)
-+ (body cnk init src str i end matches
-+ (lambda ()
-+ (next cnk init src str i end matches fail)
-+ ))))))
-+ body))))
- ((=)
- (rec `(** ,(cadr sre) ,(cadr sre) ,@(cddr sre))))
- ((>=)
-diff -ur a/irregex-utils.scm b/irregex-utils.scm
---- a/irregex-utils.scm 2016-09-11 19:03:00.000000000 -0400
-+++ b/irregex-utils.scm 2017-01-01 22:25:25.000000000 -0500
-@@ -89,7 +89,7 @@
- (case (car x)
- ((: seq)
- (cond
-- ((and (pair? (cddr x)) (pair? (cddr x)) (not (eq? x obj)))
-+ ((and (pair? (cdr x)) (pair? (cddr x)) (not (eq? x obj)))
- (display "(?:" out) (for-each lp (cdr x)) (display ")" out))
- (else (for-each lp (cdr x)))))
- ((submatch)
-diff -ur "a/manual-html/Unit irregex.html" "b/manual-html/Unit irregex.html"
---- "a/manual-html/Unit irregex.html" 2016-09-11 19:10:47.000000000 -0400
-+++ "b/manual-html/Unit irregex.html" 2017-01-01 22:26:05.000000000 -0500
-@@ -353,6 +353,6 @@
- <dd class="defsig"><p>Returns an optimized SRE matching any of the literal strings in the list, like Emacs' <tt>regexp-opt</tt>. Note this optimization doesn't help when irregex is able to build a DFA.</p></dd>
- </dl>
- <h5 id="sec:sre-.3estring"><a href="#sec:sre-.3estring">sre-&gt;string</a></h5><dl class="defsig"><dt class="defsig" id="def:sre-.3estring"><span class="sig"><tt>(sre-&gt;string &lt;sre&gt;)</tt></span> <span class="type">procedure</span></dt>
--<dd class="defsig"><p>Convert an SRE to a POSIX-style regular expression string, if possible.</p></dd>
-+<dd class="defsig"><p>Convert an SRE to a PCRE-style regular expression string, if possible.</p></dd>
- </dl>
--<hr /><p>Previous: <a href="Unit%20extras.html">Unit extras</a></p><p>Next: <a href="Unit%20srfi-1.html">Unit srfi-1</a></p></div></div></body>
-\ No newline at end of file
-+<hr /><p>Previous: <a href="Unit%20extras.html">Unit extras</a></p><p>Next: <a href="Unit%20srfi-1.html">Unit srfi-1</a></p></div></div></body>
diff --git a/gnu/packages/patches/chicken-CVE-2017-6949.patch b/gnu/packages/patches/chicken-CVE-2017-6949.patch
new file mode 100644
index 0000000000..00552eec76
--- /dev/null
+++ b/gnu/packages/patches/chicken-CVE-2017-6949.patch
@@ -0,0 +1,132 @@
+From: LemonBoy <thatlemon@gmail.com>
+Date: Fri, 10 Mar 2017 16:29:47 +0100
+Subject: [PATCH] Add bound checking to all srfi-4 vector allocations.
+
+Do what C_allocate_vector already does and prevent the creation of a
+vector that's too big or too small.
+We should be very careful to avoid the latter case because the
+allocation size is directly fed into `malloc' as 'x + sizeof(C_header)'
+thus making possible to successfully allocate a vector smaller than the
+C_header structure and get C_block_header_init to write over
+uninitialized memory.
+
+To reduce code duplication, type checking is moved from each of the
+make-*vector procedures to the common "alloc" helper procedure.
+
+Signed-off-by: Peter Bex <peter@more-magic.net>
+Signed-off-by: Kooda <kooda@upyum.com>
+---
+ srfi-4.scm | 34 +++++++++++++++-------------------
+ 1 file changed, 15 insertions(+), 19 deletions(-)
+
+diff --git a/srfi-4.scm b/srfi-4.scm
+index 7f5412b..69f58ba 100644
+--- a/srfi-4.scm
++++ b/srfi-4.scm
+@@ -255,24 +255,28 @@ EOF
+
+ ;;; Basic constructors:
+
+-(let* ([ext-alloc
+- (foreign-lambda* scheme-object ([int bytes])
+- "C_word *buf = (C_word *)C_malloc(bytes + sizeof(C_header));"
++(let* ((ext-alloc
++ (foreign-lambda* scheme-object ((size_t bytes))
++ "C_word *buf;"
++ "if (bytes > C_HEADER_SIZE_MASK) C_return(C_SCHEME_FALSE);"
++ "buf = (C_word *)C_malloc(bytes + sizeof(C_header));"
+ "if(buf == NULL) C_return(C_SCHEME_FALSE);"
+ "C_block_header_init(buf, C_make_header(C_BYTEVECTOR_TYPE, bytes));"
+- "C_return(buf);") ]
+- [ext-free
+- (foreign-lambda* void ([scheme-object bv])
+- "C_free((void *)C_block_item(bv, 1));") ]
+- [alloc
++ "C_return(buf);") )
++ (ext-free
++ (foreign-lambda* void ((scheme-object bv))
++ "C_free((void *)C_block_item(bv, 1));") )
++ (alloc
+ (lambda (loc len ext?)
++ (##sys#check-exact len loc)
++ (when (fx< len 0) (##sys#error loc "size is negative" len))
+ (if ext?
+- (let ([bv (ext-alloc len)])
++ (let ((bv (ext-alloc len)))
+ (or bv
+ (##sys#error loc "not enough memory - cannot allocate external number vector" len)) )
+- (let ([bv (##sys#allocate-vector len #t #f #t)]) ; this could be made better...
++ (let ((bv (##sys#allocate-vector len #t #f #t))) ; this could be made better...
+ (##core#inline "C_string_to_bytevector" bv)
+- bv) ) ) ] )
++ bv) ) ) ) )
+
+ (set! release-number-vector
+ (lambda (v)
+@@ -282,7 +286,6 @@ EOF
+
+ (set! make-u8vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-u8vector)
+ (let ((v (##sys#make-structure 'u8vector (alloc 'make-u8vector len ext?))))
+ (when (and ext? fin?) (set-finalizer! v ext-free))
+ (if (not init)
+@@ -295,7 +298,6 @@ EOF
+
+ (set! make-s8vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-s8vector)
+ (let ((v (##sys#make-structure 's8vector (alloc 'make-s8vector len ext?))))
+ (when (and ext? fin?) (set-finalizer! v ext-free))
+ (if (not init)
+@@ -308,7 +310,6 @@ EOF
+
+ (set! make-u16vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-u16vector)
+ (let ((v (##sys#make-structure 'u16vector (alloc 'make-u16vector (##core#inline "C_fixnum_shift_left" len 1) ext?))))
+ (when (and ext? fin?) (set-finalizer! v ext-free))
+ (if (not init)
+@@ -321,7 +322,6 @@ EOF
+
+ (set! make-s16vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-s16vector)
+ (let ((v (##sys#make-structure 's16vector (alloc 'make-s16vector (##core#inline "C_fixnum_shift_left" len 1) ext?))))
+ (when (and ext? fin?) (set-finalizer! v ext-free))
+ (if (not init)
+@@ -334,7 +334,6 @@ EOF
+
+ (set! make-u32vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-u32vector)
+ (let ((v (##sys#make-structure 'u32vector (alloc 'make-u32vector (##core#inline "C_fixnum_shift_left" len 2) ext?))))
+ (when (and ext? fin?) (set-finalizer! v ext-free))
+ (if (not init)
+@@ -347,7 +346,6 @@ EOF
+
+ (set! make-s32vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-s32vector)
+ (let ((v (##sys#make-structure 's32vector (alloc 'make-s32vector (##core#inline "C_fixnum_shift_left" len 2) ext?))))
+ (when (and ext? fin?) (set-finalizer! v ext-free))
+ (if (not init)
+@@ -360,7 +358,6 @@ EOF
+
+ (set! make-f32vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-f32vector)
+ (let ((v (##sys#make-structure 'f32vector (alloc 'make-f32vector (##core#inline "C_fixnum_shift_left" len 2) ext?))))
+ (when (and ext? fin?) (set-finalizer! v ext-free))
+ (if (not init)
+@@ -375,7 +372,6 @@ EOF
+
+ (set! make-f64vector
+ (lambda (len #!optional (init #f) (ext? #f) (fin? #t))
+- (##sys#check-exact len 'make-f64vector)
+ (let ((v (##sys#make-structure
+ 'f64vector
+ (alloc 'make-f64vector (##core#inline "C_fixnum_shift_left" len 3) ext?))))
+--
+2.1.4
+
diff --git a/gnu/packages/perl-web.scm b/gnu/packages/perl-web.scm
index 9c92a95dad..75637e6545 100644
--- a/gnu/packages/perl-web.scm
+++ b/gnu/packages/perl-web.scm
@@ -26,7 +26,7 @@
(define-public perl-mojolicious
(package
(name "perl-mojolicious")
- (version "7.10")
+ (version "7.29")
(source
(origin
(method url-fetch)
@@ -34,7 +34,7 @@
version ".tar.gz"))
(sha256
(base32
- "0811f3wajgf71y02dr2khqnaswjh582pcvhv93k101qpg61syihn"))))
+ "1kmyb9axqbklyvr3l4d6mxnb0r97s9hzn7jpzksgckklp1ic8sqh"))))
(build-system perl-build-system)
(home-page "http://mojolicious.org/")
(synopsis "Real-time web framework")
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index ea1d691c18..89aca2c540 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -1725,14 +1725,14 @@ standard library.")
(define-public python-pafy
(package
(name "python-pafy")
- (version "0.5.2")
+ (version "0.5.3.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pafy" version))
(sha256
(base32
- "1ckvrypyvb7jbqlgwdz0y337ajagjv7dgxyns326nqwypn1wpq0i"))))
+ "1a7dxi95m1043rxx1r5x3ngb66nwlq6aqcasyqqjzmmmjps4zrim"))))
(build-system python-build-system)
(arguments
`(#:tests? #f)) ; Currently pafy can not find itself in the tests
@@ -4372,14 +4372,14 @@ both of which are installed automatically if you install this library.")
(define-public python-sqlalchemy-utils
(package
(name "python-sqlalchemy-utils")
- (version "0.32.11")
+ (version "0.32.13")
(source
(origin
(method url-fetch)
(uri (pypi-uri "SQLAlchemy-Utils" version))
(sha256
(base32
- "1wghyvk73cmq3iqyg3fczw128fv2pan2v76m0xg1bw05h8fhvnk3"))))
+ "0vsib7gidjamzsz6w4s5pdhxzxsrkghjnm4sqwk94igjrl3i5ixj"))))
(build-system python-build-system)
(arguments
'(#:tests? #f)) ; FIXME: Many tests require a running database server.
@@ -4796,7 +4796,7 @@ etc. The core of this module is a decorator factory.")
(define-public python-drmaa
(package
(name "python-drmaa")
- (version "0.7.6")
+ (version "0.7.7")
(source
(origin
(method url-fetch)
@@ -4804,7 +4804,7 @@ etc. The core of this module is a decorator factory.")
"https://pypi.python.org/packages/source/d/drmaa/drmaa-"
version ".tar.gz"))
(sha256
- (base32 "0bzl9f9g34dlhwf09i3fdv7dqqzf2iq0w7d6c2bafx1nlap8qfbh"))))
+ (base32 "0xzqriqyvk5b8hszbavsyxd29wm3sxirm8zvvdm73rs2iq7w4hkx"))))
(build-system python-build-system)
;; The test suite requires libdrmaa which is provided by the cluster
;; environment. At runtime the environment variable DRMAA_LIBRARY_PATH
@@ -5666,14 +5666,14 @@ libxml2 and libxslt.")
(define-public python-beautifulsoup4
(package
(name "python-beautifulsoup4")
- (version "4.5.1")
+ (version "4.5.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "beautifulsoup4" version))
(sha256
(base32
- "1qgmhw65ncsgccjhslgkkszif47q6gvxwqv4mim17agxd81p951w"))))
+ "0glaw1vyxnbp03fni7h5496n6iib0n5iim4gax1n0ngscs9s075j"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -6742,7 +6742,7 @@ provided that can be used to do various manipulations with LilyPond files.")
(define-public python-appdirs
(package
(name "python-appdirs")
- (version "1.4.0")
+ (version "1.4.3")
(source
(origin
(method url-fetch)
@@ -6752,7 +6752,7 @@ provided that can be used to do various manipulations with LilyPond files.")
".tar.gz"))
(sha256
(base32
- "1iddva7v3fq0aqzsahkazxr7vpw28mqcrsy818z4wyiqnkplbhlg"))))
+ "14id6wxi12lgyw0mg3bcfnf888ad07jz9yj46gfzhn186z8rcn4y"))))
(build-system python-build-system)
(home-page "http://github.com/ActiveState/appdirs")
(synopsis
@@ -7126,13 +7126,13 @@ implementations of ASN.1-based codecs and protocols.")
(define-public python-ipaddress
(package
(name "python-ipaddress")
- (version "1.0.16")
+ (version "1.0.18")
(source (origin
(method url-fetch)
(uri (pypi-uri "ipaddress" version))
(sha256
(base32
- "1c3imabdrw8nfksgjjflzg7h4ynjckqacb188rf541m74arq4cas"))))
+ "1q8klj9d84cmxgz66073x1j35cplr3r77vx1znhxiwl5w74391ax"))))
(build-system python-build-system)
(home-page "https://github.com/phihag/ipaddress")
(synopsis "IP address manipulation library")
@@ -8994,14 +8994,14 @@ Python at your fingertips, in Lisp form.")
(define-public python-rauth
(package
(name "python-rauth")
- (version "0.7.2")
+ (version "0.7.3")
(source
(origin
(method url-fetch)
(uri (pypi-uri "rauth" version))
(sha256
(base32
- "00pq7zw429hhza9c0qzxiqp77m653jv09z92nralnmzwdf6pzicf"))))
+ "02kv8w8l98ky223avyq7vw7x1f2ya9chrm59r77ylq45qb0xnk2j"))))
(build-system python-build-system)
(arguments
`(#:test-target "check"))
@@ -9090,14 +9090,14 @@ otherwise matches 3.2’s API.")
(define-public python2-futures
(package
(name "python2-futures")
- (version "3.0.3")
+ (version "3.0.5")
(source
(origin
(method url-fetch)
(uri (pypi-uri "futures" version))
(sha256
(base32
- "1vcb34dqhzkhbq1957vdjszhhm5y3j9ba88dgwhqx2zynhmk9qig"))))
+ "1pw1z4329xvlabdpwqa6b7v2fxf7hl64m4cgr22ckbym8m8m4hh5"))))
(build-system python-build-system)
(arguments `(#:python ,python-2))
(home-page "https://github.com/agronholm/pythonfutures")
@@ -12294,13 +12294,13 @@ failures.")
(define-public python-natsort
(package
(name "python-natsort")
- (version "5.0.1")
+ (version "5.0.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "natsort" version))
(sha256
(base32
- "1abld5p4a6n5zjnyw5mi2pv37gqalcybv2brjr2y6l9l2p8v9mja"))))
+ "0bh6j0l8iapjnsgg3bs6q075cnzjl6zw1vlgqyv3qrygm2cxypkn"))))
(build-system python-build-system)
(arguments
`(#:phases
diff --git a/gnu/packages/rust.scm b/gnu/packages/rust.scm
index 2dedef8373..af4d322a73 100644
--- a/gnu/packages/rust.scm
+++ b/gnu/packages/rust.scm
@@ -229,18 +229,21 @@ rustc-bootstrap and cargo-bootstrap packages.")
(("/usr/bin/env") (which "env")))
;; Avoid curl as a build dependency.
(substitute* "configure"
- (("probe_need CFG_CURL curl") ""))))
+ (("probe_need CFG_CURL curl") ""))
+ #t))
(add-after 'unpack 'set-env
(lambda _
(setenv "SHELL" (which "sh"))
- (setenv "CONFIG_SHELL" (which "sh"))))
+ (setenv "CONFIG_SHELL" (which "sh"))
+ #t))
(add-after 'unpack 'patch-tests
(lambda* (#:key inputs #:allow-other-keys)
- (substitute* "src/tools/tidy/src/main.rs"
- (("^.*cargo.*::check.*$") ""))
- (substitute* "src/libstd/process.rs"
- (("\"/bin/sh\"") (string-append "\"" (assoc-ref inputs "bash") "/bin/sh\"")))
- #t))
+ (let ((bash (assoc-ref inputs "bash")))
+ (substitute* "src/tools/tidy/src/main.rs"
+ (("^.*cargo.*::check.*$") ""))
+ (substitute* "src/libstd/process.rs"
+ (("\"/bin/sh\"") (string-append "\"" bash "/bin/sh\"")))
+ #t)))
(replace 'configure
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
@@ -275,7 +278,8 @@ rustc-bootstrap and cargo-bootstrap packages.")
;; Let gcc find ld and libc startup files.
(wrap-program (string-append out "/bin/rustc")
`("PATH" ":" prefix (,(string-append ld-wrapper "/bin")))
- `("LIBRARY_PATH" ":" suffix (,(string-append libc "/lib"))))))))))
+ `("LIBRARY_PATH" ":" suffix (,(string-append libc "/lib"))))
+ #t))))))
;; rustc invokes gcc, so we need to set its search paths accordingly.
(native-search-paths (package-native-search-paths gcc))
(synopsis "Compiler for the Rust progamming language")
diff --git a/gnu/packages/scheme.scm b/gnu/packages/scheme.scm
index e1dba9bed7..fec872f5f9 100644
--- a/gnu/packages/scheme.scm
+++ b/gnu/packages/scheme.scm
@@ -325,18 +325,16 @@ mashups, office (web agendas, mail clients, ...), etc.")
(define-public chicken
(package
(name "chicken")
- (version "4.11.1")
+ (version "4.12.0")
(source (origin
(method url-fetch)
- (uri (string-append "http://code.call-cc.org/releases/"
+ (uri (string-append "https://code.call-cc.org/releases/"
version "/chicken-" version ".tar.gz"))
- (uri (string-append "http://code.call-cc.org/dev-snapshots/"
- "2016/09/12/chicken-" version ".tar.gz"))
(sha256
(base32
- "1rwymbbmnwdyhdzilv9w75an989xw9kjf3x52iqdng3nphpflcga"))
+ "12b9gaa9lqh39lj1v4wm48f6z8ww3jdkvc5bh9gqqvn6kd2wwnk0"))
(patches
- (search-patches "chicken-CVE-2016-6830+CVE-2016-6831.patch"))))
+ (search-patches "chicken-CVE-2017-6949.patch"))))
(build-system gnu-build-system)
(arguments
`(#:modules ((guix build gnu-build-system)
@@ -359,12 +357,6 @@ mashups, office (web agendas, mail clients, ...), etc.")
;; Parallel builds are not supported, as noted in README.
#:parallel-build? #f))
- ;; One of the tests ("testing direct invocation can detect calls of too
- ;; many arguments...") times out when building with a more recent GCC.
- ;; The problem was reported here:
- ;; https://lists.gnu.org/archive/html/chicken-hackers/2015-04/msg00059.html
- (native-inputs
- `(("gcc" ,gcc-4.8)))
(home-page "http://www.call-cc.org/")
(synopsis "R5RS Scheme implementation that compiles native code via C")
(description
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index cf54bbf9a4..00117067ed 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -984,7 +984,7 @@ access to mpv's powerful playback capabilities.")
(define-public youtube-dl
(package
(name "youtube-dl")
- (version "2017.03.16")
+ (version "2017.03.22")
(source (origin
(method url-fetch)
(uri (string-append "https://yt-dl.org/downloads/"
@@ -992,7 +992,7 @@ access to mpv's powerful playback capabilities.")
version ".tar.gz"))
(sha256
(base32
- "14nlgl0kh4mwl7sx58vd7nxr5iklxi00612lmydy91ngm6ykrpsm"))))
+ "1zz97g23diggcnqg2hjq9grijskly8ag727f1i509hl7z0lxkh69"))))
(build-system python-build-system)
(arguments
;; The problem here is that the directory for the man page and completion
generated by cgit v1.2.3 (git 2.45.0) at 2024-12-25 00:27:00 +0000