diff options
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 151d74d25c..25202410e5 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -14602,6 +14602,57 @@ with a nested autoregressive correlated error structure for the effect of interest on transformed methylation proportions.") (license license:expat))) +(define-public r-biscuiteer + (package + (name "r-biscuiteer") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "biscuiteer" version)) + (sha256 + (base32 + "0f4kk4v2c5diq0fbvyvgwjd1kjk9izr6n9wfrlrr7wbx4pz3c3h6")))) + (properties `((upstream-name . "biscuiteer"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-biscuiteerdata" ,r-biscuiteerdata) + ("r-bsseq" ,r-bsseq) + ("r-data-table" ,r-data-table) + ("r-delayedmatrixstats" ,r-delayedmatrixstats) + ("r-dmrseq" ,r-dmrseq) + ("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicranges" ,r-genomicranges) + ("r-gtools" ,r-gtools) + ("r-hdf5array" ,r-hdf5array) + ("r-homo-sapiens" ,r-homo-sapiens) + ("r-impute" ,r-impute) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-mus-musculus" ,r-mus-musculus) + ("r-qdnaseq" ,r-qdnaseq) + ("r-qualv" ,r-qualv) + ("r-r-utils" ,r-r-utils) + ("r-readr" ,r-readr) + ("r-rsamtools" ,r-rsamtools) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-variantannotation" ,r-variantannotation))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/trichelab/biscuiteer") + (synopsis "Convenience functions for the Biscuit package") + (description + "This package provides a test harness for bsseq loading of Biscuit +output, summarization of WGBS data over defined regions and in mappable +samples, with or without imputation, dropping of mostly-NA rows, age +estimates, etc.") + (license license:gpl3))) + (define-public r-tximeta (package (name "r-tximeta") |