32 files changed, 1568 insertions, 320 deletions

diff --git a/gnu/local.mk b/gnu/local.mk
index e4730aafcd..16b63bc951 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -950,6 +950,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/ilmbase-fix-tests.patch			\
   %D%/packages/patches/intltool-perl-compatibility.patch	\
   %D%/packages/patches/irrlicht-use-system-libs.patch		\
+  %D%/packages/patches/isc-dhcp-4.4.1-fixes-for-newer-bind.patch	\
   %D%/packages/patches/isl-0.11.1-aarch64-support.patch	\
   %D%/packages/patches/jacal-fix-texinfo.patch			\
   %D%/packages/patches/jamvm-arm.patch				\
@@ -1076,6 +1077,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/lxsession-use-gapplication.patch         \
   %D%/packages/patches/make-glibc-compat.patch			\
   %D%/packages/patches/make-impure-dirs.patch			\
+  %D%/packages/patches/mame-rapidjson-fix.patch			\
   %D%/packages/patches/mariadb-client-test-32bit.patch		\
   %D%/packages/patches/mars-install.patch			\
   %D%/packages/patches/mars-sfml-2.3.patch			\
@@ -1291,7 +1293,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/scheme48-tests.patch			\
   %D%/packages/patches/scotch-build-parallelism.patch		\
   %D%/packages/patches/scotch-integer-declarations.patch	\
-  %D%/packages/patches/scribus-poppler.patch			\
   %D%/packages/patches/sdl-libx11-1.6.patch			\
   %D%/packages/patches/seq24-rename-mutex.patch			\
   %D%/packages/patches/sharutils-CVE-2018-1000097.patch		\
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index 7ffdf18609..bd3c14033e 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
-;;; Copyright © 2014, 2015, 2016, 2018 Mark H Weaver <mhw@netris.org>
+;;; Copyright © 2014, 2015, 2016, 2018, 2019 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2014, 2015, 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015, 2016 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2015 Alex Sassmannshausen <alex.sassmannshausen@gmail.com>
@@ -684,9 +684,9 @@ connection alive.")
 (define-public isc-dhcp
   (let* ((bind-major-version "9")
          (bind-minor-version "11")
-         (bind-patch-version "4")
-         (bind-release-type "-P")         ; for patch release, use "-P"
-         (bind-release-version "2")      ; for patch release, e.g. "6"
+         (bind-patch-version "9")
+         (bind-release-type "")         ; for patch release, use "-P"
+         (bind-release-version "")      ; for patch release, e.g. "6"
          (bind-version (string-append bind-major-version
                                       "."
                                       bind-minor-version
@@ -710,7 +710,18 @@ connection alive.")
          #:phases
          (modify-phases %standard-phases
            (add-after 'unpack 'replace-bundled-bind
-             (lambda* (#:key inputs #:allow-other-keys)
+             (lambda* (#:key inputs native-inputs #:allow-other-keys)
+               ;; XXX TODO: Remove the following invocation of 'patch' when
+               ;; isc-dhcp is updated.  It should be needed only for 4.4.1.
+               (let ((patch (string-append (assoc-ref (or native-inputs inputs)
+                                                      "patch")
+                                           "/bin/patch"))
+                     (the-patch (assoc-ref (or native-inputs inputs)
+                                           "fixes-for-newer-bind.patch")))
+                 (format #t "applying '~a'...~%" the-patch)
+                 (invoke patch "--force" "--no-backup-if-mismatch"
+                         "-p1" "--input" the-patch))
+
                (delete-file "bind/bind.tar.gz")
                (copy-file (assoc-ref inputs "bind-source-tarball")
                           "bind/bind.tar.gz")
@@ -743,15 +754,18 @@ connection alive.")
                ;; shell is used.
                (with-directory-excursion "bind"
                  (substitute* "Makefile"
-                   (("\\./configure")
+                   (("\\./configure ")
                     (let ((sh (which "sh")))
                       (string-append "./configure CONFIG_SHELL="
-                                     sh " SHELL=" sh))))
+                                     sh " SHELL=" sh " "))))
 
                  (let ((bind-directory (string-append "bind-" ,bind-version)))
                    (invoke "tar" "xf" "bind.tar.gz")
                    (for-each patch-shebang
                              (find-files bind-directory ".*"))
+                   (substitute* (string-append bind-directory "/configure")
+                     (("/usr/bin/file")
+                      (which "file")))
                    (invoke "tar" "cf" "bind.tar.gz"
                            bind-directory
                            ;; avoid non-determinism in the archive
@@ -787,7 +801,15 @@ connection alive.")
                            (list inetutils net-tools coreutils sed))))
                  #t))))))
 
-      (native-inputs `(("perl" ,perl)))
+      (native-inputs
+       `(("perl" ,perl)
+         ("file" ,file)
+
+         ;; XXX TODO: Remove the following patch, and also the 'patch'
+         ;; program, when isc-dhcp is updated.
+         ("fixes-for-newer-bind.patch"
+          ,(search-patch "isc-dhcp-4.4.1-fixes-for-newer-bind.patch"))
+         ("patch" ,patch)))
 
       (inputs `(("inetutils" ,inetutils)
                 ("net-tools" ,net-tools)
@@ -803,7 +825,7 @@ connection alive.")
                                         "/bind-" bind-version ".tar.gz"))
                     (sha256
                      (base32
-                      "04fq17zksd2b3w6w6padps5n7b6s2lasxpksbhl4378h56vgfnm8"))))
+                      "03n57as73ygw6g3lqsmq2idkykajpbskzgixixdvi5a76m4g0fwn"))))
 
                 ;; When cross-compiling, we need the cross Coreutils and sed.
                 ;; Otherwise just use those from %FINAL-INPUTS.
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e860b5b881..a9e0264369 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14868,6 +14868,24 @@ mutations from scRNA-Seq data.")
 some of the details of opening and jumping in tabix-indexed files.")
    (license license:expat)))
 
+(define tabixpp-freebayes
+  ;; This version works with FreeBayes while the released
+  ;; version doesn't. The released creates a variable with the name \"vcf\"
+  ;; somewhere, which is also the name of a namespace in vcflib.
+  (let ((commit "bbc63a49acc52212199f92e9e3b8fba0a593e3f7"))
+    (package
+      (inherit tabixpp)
+      (name "tabixpp-freebayes")
+      (version (git-version "0.0.0" "1" commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/ekg/tabixpp/")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32 "017qsmsc2kyiyzqr9nl8cc6pfldxf16dbn8flx5i59mbqr9ydi7g")))))))
+
 (define-public smithwaterman
   ;; TODO: Upgrading smithwaterman breaks FreeBayes.
   (let ((commit "203218b47d45ac56ef234716f1bd4c741b289be1"))
@@ -14995,3 +15013,220 @@ provides a FASTA reader and indexer that can be embedded into applications
 which would benefit from directly reading subsequences from FASTA files.  The
 library automatically handles index file generation and use.")
       (license (list license:expat license:gpl2)))))
+
+(define-public vcflib
+  (let ((commit "5ac091365fdc716cc47cc5410bb97ee5dc2a2c92")
+        (revision "1"))
+    (package
+      (name "vcflib")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/vcflib/vcflib/")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1gijvcz1lcdn5kvgzb671l6iby0379qk00nqmcrszgk67hfwx6kq"))))
+      (build-system gnu-build-system)
+      (inputs
+       `(("zlib" ,zlib)))
+      (native-inputs
+       `(("perl" ,perl)
+         ("python" ,python-2)
+         ;; Submodules.
+         ;; This package builds against the .o files so we need to extract the source.
+         ("tabixpp-src" ,(package-source tabixpp-freebayes))
+         ("smithwaterman-src" ,(package-source smithwaterman))
+         ("multichoose-src" ,(package-source multichoose))
+         ("fsom-src" ,(package-source fsom))
+         ("filevercmp-src" ,(package-source filevercmp))
+         ("fastahack-src" ,(package-source fastahack))
+         ("intervaltree-src"
+          ,(origin
+             (method git-fetch)
+             (uri (git-reference
+                   (url "https://github.com/ekg/intervaltree/")
+                   (commit "dbb4c513d1ad3baac516fc1484c995daf9b42838")))
+             (file-name "intervaltree-src-checkout")
+             (sha256
+              (base32 "1fy5qbj4bg8d2bjysvaa9wfnqn2rj2sk5yra2h4l5pzvy53f23fj"))))))
+      (arguments
+       `(#:tests? #f ; no tests
+         #:phases
+         (modify-phases %standard-phases
+           (delete 'configure)
+           (delete 'check)
+           (add-after 'unpack 'unpack-submodule-sources
+             (lambda* (#:key inputs #:allow-other-keys)
+               (let ((unpack (lambda (source target)
+                               (with-directory-excursion target
+                                 (if (file-is-directory? (assoc-ref inputs source))
+                                     (copy-recursively (assoc-ref inputs source) ".")
+                                     (invoke "tar" "xvf"
+                                             (assoc-ref inputs source)
+                                             "--strip-components=1"))))))
+                 (and
+                  (unpack "intervaltree-src" "intervaltree")
+                  (unpack "fastahack-src" "fastahack")
+                  (unpack "filevercmp-src" "filevercmp")
+                  (unpack "fsom-src" "fsom")
+                  (unpack "multichoose-src" "multichoose")
+                  (unpack "smithwaterman-src" "smithwaterman")
+                  (unpack "tabixpp-src" "tabixpp")))))
+           (replace 'build
+             (lambda* (#:key inputs make-flags #:allow-other-keys)
+               (with-directory-excursion "tabixpp"
+                 (invoke "make"))
+               (invoke "make" "CC=gcc"
+                       (string-append "CFLAGS=\"" "-Itabixpp " "\"")
+                       "all")))
+           (replace 'install
+             (lambda* (#:key outputs #:allow-other-keys)
+               (let ((bin (string-append (assoc-ref outputs "out") "/bin"))
+                     (lib (string-append (assoc-ref outputs "out") "/lib")))
+                 (for-each (lambda (file)
+                             (install-file file bin))
+                           (find-files "bin" ".*"))
+                 ;; The header files in src/ do not interface libvcflib,
+                 ;; therefore they are left out.
+                 (install-file "libvcflib.a" lib))
+               #t)))))
+      (home-page "https://github.com/vcflib/vcflib/")
+      (synopsis "Library for parsing and manipulating VCF files")
+      (description "Vcflib provides methods to manipulate and interpret
+sequence variation as it can be described by VCF.  It is both an API for parsing
+and operating on records of genomic variation as it can be described by the VCF
+format, and a collection of command-line utilities for executing complex
+manipulations on VCF files.")
+      (license license:expat))))
+
+(define-public freebayes
+  (let ((commit "3ce827d8ebf89bb3bdc097ee0fe7f46f9f30d5fb")
+        (revision "1")
+        (version "1.0.2"))
+    (package
+      (name "freebayes")
+      (version (git-version version revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/ekg/freebayes.git")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32 "1sbzwmcbn78ybymjnhwk7qc5r912azy5vqz2y7y81616yc3ba2a2"))))
+      (build-system gnu-build-system)
+      (inputs
+       `(("bamtools" ,bamtools)
+         ("htslib" ,htslib)
+         ("zlib" ,zlib)))
+      (native-inputs
+       `(("bc" ,bc)                     ; Needed for running tests.
+         ("samtools" ,samtools)         ; Needed for running tests.
+         ("parallel" ,parallel)         ; Needed for running tests.
+         ("perl" ,perl)                 ; Needed for running tests.
+         ("procps" ,procps)             ; Needed for running tests.
+         ("python" ,python-2)           ; Needed for running tests.
+         ("vcflib-src" ,(package-source vcflib))
+         ;; These are submodules for the vcflib version used in freebayes.
+         ;; This package builds against the .o files so we need to extract the source.
+         ("tabixpp-src" ,(package-source tabixpp-freebayes))
+         ("smithwaterman-src" ,(package-source smithwaterman))
+         ("multichoose-src" ,(package-source multichoose))
+         ("fsom-src" ,(package-source fsom))
+         ("filevercmp-src" ,(package-source filevercmp))
+         ("fastahack-src" ,(package-source fastahack))
+         ("intervaltree-src"
+          ,(origin
+             (method git-fetch)
+             (uri (git-reference
+                   (url "https://github.com/ekg/intervaltree/")
+                   (commit "dbb4c513d1ad3baac516fc1484c995daf9b42838")))
+             (file-name "intervaltree-src-checkout")
+             (sha256
+              (base32 "1fy5qbj4bg8d2bjysvaa9wfnqn2rj2sk5yra2h4l5pzvy53f23fj"))))
+         ;; These submodules are needed to run the tests.
+         ("bash-tap-src" ,(package-source bash-tap))
+         ("test-simple-bash-src"
+          ,(origin
+             (method git-fetch)
+             (uri (git-reference
+                   (url "https://github.com/ingydotnet/test-simple-bash/")
+                   (commit "124673ff204b01c8e96b7fc9f9b32ee35d898acc")))
+             (file-name "test-simple-bash-src-checkout")
+             (sha256
+              (base32 "043plp6z0x9yf7mdpky1fw7zcpwn1p47px95w9mh16603zqqqpga"))))))
+      (arguments
+       `(#:make-flags
+         (list "CC=gcc"
+               (string-append "BAMTOOLS_ROOT="
+                              (assoc-ref %build-inputs "bamtools")))
+         #:test-target "test"
+         #:phases
+         (modify-phases %standard-phases
+           (delete 'configure)
+           (add-after 'unpack 'fix-tests
+             (lambda _
+               (substitute* "test/t/01_call_variants.t"
+                 (("grep -P \"\\(\\\\t500\\$\\|\\\\t11000\\$\\|\\\\t1000\\$\\)\"")
+                  "grep -E '	(500|11000|1000)$'"))
+               #t))
+           (add-after 'unpack 'unpack-submodule-sources
+             (lambda* (#:key inputs #:allow-other-keys)
+               (let ((unpack (lambda (source target)
+                               (with-directory-excursion target
+                                 (if (file-is-directory? (assoc-ref inputs source))
+                                     (copy-recursively (assoc-ref inputs source) ".")
+                                     (invoke "tar" "xvf"
+                                             (assoc-ref inputs source)
+                                             "--strip-components=1"))))))
+                 (and
+                  (unpack "vcflib-src" "vcflib")
+                  (unpack "fastahack-src" "vcflib/fastahack")
+                  (unpack "filevercmp-src" "vcflib/filevercmp")
+                  (unpack "fsom-src" "vcflib/fsom")
+                  (unpack "intervaltree-src" "vcflib/intervaltree")
+                  (unpack "multichoose-src" "vcflib/multichoose")
+                  (unpack "smithwaterman-src" "vcflib/smithwaterman")
+                  (unpack "tabixpp-src" "vcflib/tabixpp")
+                  (unpack "test-simple-bash-src" "test/test-simple-bash")
+                  (unpack "bash-tap-src" "test/bash-tap")))))
+           (add-after 'unpack-submodule-sources 'fix-makefiles
+             (lambda _
+               ;; We don't have the .git folder to get the version tag from.
+               (substitute* "vcflib/Makefile"
+                 (("^GIT_VERSION.*")
+                  (string-append "GIT_VERSION = v" ,version)))
+               (substitute* "src/Makefile"
+                 (("-I\\$\\(BAMTOOLS_ROOT\\)/src")
+                  "-I$(BAMTOOLS_ROOT)/include/bamtools"))
+               #t))
+           (add-before 'build 'build-tabixpp-and-vcflib
+             (lambda* (#:key inputs make-flags #:allow-other-keys)
+               (with-directory-excursion "vcflib"
+                 (with-directory-excursion "tabixpp"
+                   (apply invoke "make"
+                          (string-append "HTS_LIB="
+                                         (assoc-ref inputs "htslib")
+                                         "/lib/libhts.a")
+                          make-flags))
+                 (apply invoke "make"
+                        (string-append "CFLAGS=-Itabixpp")
+                        "all"
+                        make-flags))))
+           (replace 'install
+             (lambda* (#:key outputs #:allow-other-keys)
+               (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+                 (install-file "bin/freebayes" bin)
+                 (install-file "bin/bamleftalign" bin))
+               #t)))))
+      (home-page "https://github.com/ekg/freebayes")
+      (synopsis "Haplotype-based variant detector")
+      (description "FreeBayes is a Bayesian genetic variant detector designed to
+find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms),
+indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and
+complex events (composite insertion and substitution events) smaller than the
+length of a short-read sequencing alignment.")
+      (license license:expat))))
diff --git a/gnu/packages/bittorrent.scm b/gnu/packages/bittorrent.scm
index 1e171dcb6a..0ab165cde4 100644
--- a/gnu/packages/bittorrent.scm
+++ b/gnu/packages/bittorrent.scm
@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014 Taylan Ulrich Bayirli/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2016, 2017, 2018 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2016, 2017, 2018, 2019 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Tomáš Čech <sleep_walker@gnu.org>
 ;;; Copyright © 2016, 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -183,35 +183,38 @@ XML-RPC over SCGI.")
     (license l:gpl2+)))
 
 (define-public tremc
-  (package
-    (name "tremc")
-    (version "0.9.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/tremc/tremc.git")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1yhwvlcyv1s830p5a7q5x3mkb3mbvr5cn5nh7y62l5b6iyyynlvm"))))
-    (build-system gnu-build-system)
-    (arguments
-     `(#:tests? #f                      ; no test suite
-       #:make-flags
-       (list (string-append "PREFIX=" (assoc-ref %outputs "out")))
-       #:phases
-       (modify-phases %standard-phases
-         ;; The software is just a Python script that must be copied into place.
-         (delete 'configure)
-         (delete 'build))))
-    (inputs
-     `(("python" ,python)))
-    (synopsis "Console client for the Transmission BitTorrent daemon")
-    (description "Tremc is a console client, with a curses interface, for the
+  (let ((commit "4d50dab7376601daca13f7be6eabc0eaa057c1b0")
+        (revision "0"))
+    (package
+      (name "tremc")
+      (version (git-version "0.9.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/tremc/tremc.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "0qpi65n8rv7l9mg8qyqx70z83inkl8v5r5nks65c99lhscdki0w7"))))
+      (build-system gnu-build-system)
+      (arguments
+       `(#:tests? #f                      ; no test suite
+         #:make-flags
+         (list (string-append "PREFIX=" (assoc-ref %outputs "out")))
+         #:phases
+         (modify-phases %standard-phases
+           ;; The software is just a Python script that must be copied into place.
+           (delete 'configure)
+           (delete 'build))))
+      (inputs
+       `(("python" ,python)))
+      (synopsis "Console client for the Transmission BitTorrent daemon")
+      (description "Tremc is a console client, with a curses interface, for the
 Transmission BitTorrent daemon.")
-    (home-page "https://github.com/tremc/tremc")
-    (license l:gpl3+)))
+      (home-page "https://github.com/tremc/tremc")
+      (license l:gpl3+))))
 
 (define-public transmission-remote-cli
   (package
diff --git a/gnu/packages/chromium.scm b/gnu/packages/chromium.scm
index a014486361..4797004b33 100644
--- a/gnu/packages/chromium.scm
+++ b/gnu/packages/chromium.scm
@@ -238,8 +238,8 @@ from forcing GEXP-PROMISE."
                       #:system system
                       #:guile-for-build guile)))
 
-(define %chromium-version "76.0.3809.87")
-(define %ungoogled-revision "6ea939002bae43a27910e03569d43519d07842e7")
+(define %chromium-version "76.0.3809.100")
+(define %ungoogled-revision "8eba5c0df1a318012e3deab39a9add252a0d56a3")
 (define %debian-revision "debian/76.0.3809.87-2")
 (define package-revision "0")
 (define %package-version (string-append %chromium-version "-"
@@ -254,7 +254,7 @@ from forcing GEXP-PROMISE."
                         %chromium-version ".tar.xz"))
     (sha256
      (base32
-      "1521vh38mfgy7aj1lw1vpbdm8m6wyh52d5p7bz4x6kvvxsnacp11"))))
+      "0vfjfxsqf8jrmd7y08ln1lpbilwi150875zn2bawwdq87vd3mncc"))))
 
 (define %ungoogled-origin
   (origin
@@ -265,7 +265,7 @@ from forcing GEXP-PROMISE."
                               (string-take %ungoogled-revision 7)))
     (sha256
      (base32
-      "1nhrh9fn1appbxf8d3dg49jrqjvha721s89i60s4m63d037cifzr"))))
+      "08fd9whfc1qky44xqxbypr7jz1rg6cma017wj4b5c5b14grxz6k6"))))
 
 (define %debian-origin
   (origin
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d928f971d0..17c85fe512 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9396,14 +9396,14 @@ maps.")
 (define-public r-tidytree
   (package
     (name "r-tidytree")
-    (version "0.2.5")
+    (version "0.2.6")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "tidytree" version))
        (sha256
         (base32
-         "0vfjv33352dmk9cr2qn0knzg761068rdk6jg32csd9vpmcma8awp"))))
+         "13mhizbsawmfqjpnzb73yw6kn1f1wlz0vhyzj3g0rj6ry880rw89"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ape" ,r-ape)
@@ -13764,14 +13764,14 @@ sets of URLs.")
 (define-public r-ggforce
   (package
     (name "r-ggforce")
-    (version "0.2.2")
+    (version "0.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggforce" version))
        (sha256
         (base32
-         "0snxx9zhcccxa7pz9pf3bjqmcmv9mz4m47v81hklnhm25jj40xg2"))))
+         "118qyzy8h9kkkdpjd09667gxgw7xy1kbc8r87pswh54ixn8hymwk"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-ggplot2" ,r-ggplot2)
@@ -13782,7 +13782,9 @@ sets of URLs.")
        ("r-rcppeigen" ,r-rcppeigen)
        ("r-rlang" ,r-rlang)
        ("r-scales" ,r-scales)
-       ("r-tweenr" ,r-tweenr)))
+       ("r-tidyselect" ,r-tidyselect)
+       ("r-tweenr" ,r-tweenr)
+       ("r-withr" ,r-withr)))
     (home-page "https://ggforce.data-imaginist.com")
     (synopsis "Accelerating ggplot2")
     (description
diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm
index db9665d1aa..6500adb215 100644
--- a/gnu/packages/crates-io.scm
+++ b/gnu/packages/crates-io.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2019 Ivan Petkov <ivanppetkov@gmail.com>
+;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -22,27 +23,473 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages))
 
-(define-public rust-unicode-xid
+;;;
+;;; Please: Try to add new module packages in alphabetic order.
+;;;
+
+(define-public rust-autocfg
   (package
-    (name "rust-unicode-xid")
-    (version "0.1.0")
+    (name "rust-autocfg")
+    (version "0.1.5")
     (source
       (origin
         (method url-fetch)
-        (uri (crate-uri "unicode-xid" version))
-        (file-name
-          (string-append name "-" version ".tar.gz"))
+        (uri (crate-uri "autocfg" version))
+        (file-name (string-append name "-" version ".tar.gz"))
         (sha256
-          (base32
-            "1z57lqh4s18rr4x0j4fw4fmp9hf9346h0kmdgqsqx0fhjr3k0wpw"))))
+         (base32
+          "0asl6fnc35yk5l2rxwhp25v128jgm45dp754h9z8x51b6n90w4r2"))))
     (build-system cargo-build-system)
-    (home-page
-      "https://github.com/unicode-rs/unicode-xid")
-    (synopsis "Determine Unicode XID related properties")
-    (description "Determine whether characters have the XID_Start
-or XID_Continue properties according to Unicode Standard Annex #31.")
-    ;; Dual licensed.
-    (license (list license:asl2.0 license:expat))))
+    (home-page "https://github.com/cuviper/autocfg")
+    (synopsis "Automatic cfg for Rust compiler features")
+    (description "Rust library for build scripts to automatically configure
+code based on compiler support.  Code snippets are dynamically tested to see
+if the @code{rustc} will accept them, rather than hard-coding specific version
+support.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-bencher
+  (package
+    (name "rust-bencher")
+    (version "0.1.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "bencher" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1x8p2xblgqssay8cdykp5pkfc0np0jk5bs5cx4f5av097aav9zbx"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/bluss/bencher/")
+    (synopsis "Port of the libtest benchmark runner to Rust stable")
+    (description "This package provides a port of the libtest (unstable Rust)
+benchmark runner to Rust stable releases.  Supports running benchmarks and
+filtering based on the name.  Benchmark execution works exactly the same way
+and no more (caveat: black_box is still missing!).")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-bitflags
+  (package
+    (name "rust-bitflags")
+    (version "1.1.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "bitflags" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1zc1qb1hwsnl2d8rhzicsv9kqd5b2hwbrscrcfw5as4sfr35659x"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/bitflags/bitflags")
+    (synopsis "Macro to generate structures which behave like bitflags")
+    (description "This package provides a macro to generate structures which
+behave like a set of bitflags.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-cfg-if
+  (package
+    (name "rust-cfg-if")
+    (version "0.1.9")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "cfg-if" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0csygklgz3ybpr0670rkip49zh76m43ar3k7xgypkzbzrwycx1ml"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/alexcrichton/cfg-if")
+    (synopsis "Define an item depending on parameters")
+    (description "This package provides a macro to ergonomically define an item
+depending on a large number of #[cfg] parameters.  Structured like an
+@code{if-else} chain, the first matching branch is the item that gets emitted.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-discard
+  (package
+    (name "rust-discard")
+    (version "1.0.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "discard" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1h67ni5bxvg95s91wgicily4ix7lcw7cq0a5gy9njrybaibhyb91"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/Pauan/rust-discard")
+    (synopsis "Allow for intentionally leaking memory")
+    (description "There are situations where you need to intentionally leak some
+memory but not other memory.  This package provides a discard trait which allows
+for intentionally leaking memory")
+    (license license:expat)))
+
+(define-public rust-doc-comment
+  (package
+    (name "rust-doc-comment")
+    (version "0.3.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "doc-comment" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "15rsqxgarfpb1yim9sbp9yfgj7p2dq6v51c6bq1a62paii9ylgcj"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/GuillaumeGomez/doc-comment")
+    (synopsis "Macro to generate doc comments")
+    (description "This package provides a way to generate doc comments
+from macros.")
+    (license license:expat)))
+
+(define-public rust-dtoa
+  (package
+    (name "rust-dtoa")
+    (version "0.4.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "dtoa" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0phbm7i0dpn44gzi07683zxaicjap5064w62pidci4fhhciv8mza"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/dtolnay/dtoa")
+    (synopsis "Fast functions for printing floating-point primitives")
+    (description "This crate provides fast functions for printing
+floating-point primitives to an @code{io::Write}.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-fallible-iterator
+  (package
+    (name "rust-fallible-iterator")
+    (version "0.2.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "fallible-iterator" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1xq759lsr8gqss7hva42azn3whgrbrs2sd9xpn92c5ickxm1fhs4"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/sfackler/rust-fallible-iterator")
+    (synopsis "Fallible iterator traits")
+    (description "If the @code{std} or @code{alloc} features are enabled, this
+crate provides implementations for @code{Box}, @code{Vec}, @code{BTreeMap}, and
+@code{BTreeSet}.  If the @code{std} feature is enabled, this crate additionally
+provides implementations for @code{HashMap} and @code{HashSet}.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-fnv
+  (package
+    (name "rust-fnv")
+    (version "1.0.6")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "fnv" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1ww56bi1r5b8id3ns9j3qxbi7w5h005rzhiryy0zi9h97raqbb9g"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/servo/rust-fnv")
+    (synopsis "implementation of the Fowler-Noll-Vo hash function")
+    (description "The @code{fnv} hash function is a custom @code{Hasher}
+implementation that is more efficient for smaller hash keys.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-fs-extra
+  (package
+    (name "rust-fs-extra")
+    (version "1.1.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "fs_extra" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0x6675wdhsx277k1k1235jwcv38naf20d8kwrk948ds26hh4lajz"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/webdesus/fs_extra")
+    (synopsis "Extra filesystem methods")
+    (description "Expanding opportunities standard library @code{std::fs} and
+@code{std::io}.  Recursively copy folders with recept information about
+process and much more.")
+    (license license:expat)))
+
+(define-public rust-futures
+  (package
+    (name "rust-futures")
+    (version "0.1.28")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "futures" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0saq8ffjw1pwf1pzhw3kq1z7dfq6wpd8x93dnni6vbkc799kkp25"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/rust-lang-nursery/futures-rs")
+    (synopsis "Implementation of zero-cost futures in Rust")
+    (description "An implementation of @code{futures} and @code{streams}
+featuring zero allocations, composability, and iterator-like interfaces.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-hex
+  (package
+    (name "rust-hex")
+    (version "0.3.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "hex" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0xsdcjiik5j750j67zk42qdnmm4ahirk3gmkmcqgq7qls2jjcl40"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/KokaKiwi/rust-hex")
+    (synopsis "Encode and decode data to/from hexadecimals")
+    (description "This crate allows for encoding and decoding data into/from
+hexadecimal representation.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-itoa
+  (package
+    (name "rust-itoa")
+    (version "0.4.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "itoa" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0zvg2d9qv3avhf3d8ggglh6fdyw8kkwqg3r4622ly5yhxnvnc4jh"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/dtolnay/itoa")
+    (synopsis "Fast functions for printing integer primitives")
+    (description "This crate provides fast functions for printing integer
+primitives to an @code{io::Write}.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-json
+  (package
+    (name "rust-json")
+    (version "0.11.14")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "json" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1hj8c6xj5c2aqqszi8naaflmcdbya1i9byyjrq4iybxjb4q91mq1"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/maciejhirsz/json-rust")
+    (synopsis "JSON implementation in Rust")
+    (description "This crate provides a JSON implementation in Rust, reducing
+friction with idiomatic Rust structs to ease interopability.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-maplit
+  (package
+    (name "rust-maplit")
+    (version "1.0.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "maplit" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0hsczmvd6zkqgzqdjp5hfyg7f339n68w83n4pxvnsszrzssbdjq8"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/bluss/maplit")
+    (synopsis "Collection of Map macros")
+    (description "This crate provides a collection of @code{literal} macros for
+@code{HashMap}, @code{HashSet}, @code{BTreeMap}, and @code{BTreeSet.}")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-matches
+  (package
+    (name "rust-matches")
+    (version "0.1.8")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "matches" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "020axl4q7rk9vz90phs7f8jas4imxal9y9kxl4z4v7a6719mrz3z"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/SimonSapin/rust-std-candidates")
+    (synopsis "Macro to evaluate whether an expression matches a pattern.")
+    (description "This package provides a macro to evaluate, as a boolean,
+whether an expression matches a pattern.")
+    (license license:expat)))
+
+(define-public rust-md5
+  (package
+    (name "rust-md5")
+    (version "0.6.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "md5" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "17b2xm4h4cvxsdjsf3kdrzqv2za60kak961xzi5kmw6g6djcssvy"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/stainless-steel/md5")
+    (synopsis "MD5 hash function in Rust")
+    (description "The package provides the MD5 hash function.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-peeking-take-while
+  (package
+    (name "rust-peeking-take-while")
+    (version "0.1.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "peeking_take_while" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "16bhqr6rdyrp12zv381cxaaqqd0pwysvm1q8h2ygihvypvfprc8r"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/fitzgen/peeking_take_while")
+    (synopsis "Provides the peeking_take_while iterator adaptor method")
+    (description
+      "Like @code{Iterator::take_while}, but calls the predicate on a peeked
+value.  This allows you to use @code{Iterator::by_ref} and
+@code{Iterator::take_while} together, and still get the first value for which
+the @code{take_while} predicate returned false after dropping the @code{by_ref}.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-percent-encoding
+  (package
+    (name "rust-percent-encoding")
+    (version "2.0.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "percent-encoding" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0m6rkp3iy11la04p6z3492rns6n693pvmx585dvfmzzlzak2hkxs"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/servo/rust-url/")
+    (synopsis "Percent encoding and decoding")
+    (description "This crate provides percent encoding and decoding.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-pin-utils
+  (package
+    (name "rust-pin-utils")
+    (version "0.1.0-alpha.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "pin-utils" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "11xmyx00n4m37d546by2rxb8ryxs12v55cc172i3yak1rqccd52q"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/rust-lang-nursery/pin-utils")
+    (synopsis "Utilities for pinning")
+    (description "This crate provides utilities for pinning values on the stack.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-plain
+  (package
+    (name "rust-plain")
+    (version "0.2.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "plain" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "19n1xbxb4wa7w891268bzf6cbwq4qvdb86bik1z129qb0xnnnndl"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/randomites/plain")
+    (synopsis "Rust library that allows reinterpreting data safely")
+    (description "This package provides a small Rust library that allows users
+ to reinterpret data of certain types safely.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-pocket-resources
+  (package
+    (name "rust-pocket-resources")
+    (version "0.3.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "pocket-resources" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1n2i5vmi8fdbw89wm5nz1ws1z9f1qax911p6ksg4scmdg23z6df1"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/tomaka/pocket-resources")
+    (synopsis "Include resources in your applications")
+    (description "This crate allows you to include resources in your
+applications.")
+    (license license:expat)))
+
+(define-public rust-ppv-lite86
+  (package
+    (name "rust-ppv-lite86")
+    (version "0.2.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "ppv-lite86" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "06snnv338w341nicfqba2jgln5dsla72ndkgrw7h1dfdb3vgkjz3"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/cryptocorrosion/cryptocorrosion")
+    (synopsis "Implementation of the crypto-simd API for x86")
+    (description "This crate provides an implementation of the crypto-simd API
+for x86.")
+    (license (list license:asl2.0
+                   license:expat))))
 
 (define-public rust-proc-macro2
   (package
@@ -69,6 +516,26 @@ in terms of the upstream unstable API.")
     ;; Dual licensed.
     (license (list license:asl2.0 license:expat))))
 
+(define-public rust-quick-error
+  (package
+    (name "rust-quick-error")
+    (version "1.2.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "quick-error" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1w6kgwwv7p7zr0yyg5rb315lkk24bimywklwx7fsvsbwi10bjx4j"))))
+    (build-system cargo-build-system)
+    (home-page "http://github.com/tailhook/quick-error")
+    (synopsis "Macro which makes error types pleasant to write")
+    (description "This crate provides a macro which makes error types pleasant
+to write.")
+    (license (list license:asl2.0
+                   license:expat))))
+
 (define-public rust-quote
   (package
     (name "rust-quote")
@@ -90,3 +557,396 @@ in terms of the upstream unstable API.")
     (description "Quasi-quoting macro quote!(...)")
     ;; Dual licensed.
     (license (list license:asl2.0 license:expat))))
+
+(define-public rust-rustc-std-workspace-core
+  (package
+    (name "rust-rustc-std-workspace-core")
+    (version "1.0.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "rustc-std-workspace-core" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1309xhwyai9xpz128xrfjqkmnkvgjwddznmj7brbd8i8f58zamhr"))))
+    (build-system cargo-build-system)
+    (home-page "https://crates.io/crates/rustc-std-workspace-core")
+    (synopsis "Explicitly empty crate for rust-lang/rust integration")
+    (description "This crate provides an explicitly empty crate for
+rust-lang/rust integration.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-scoped-tls
+  (package
+    (name "rust-scoped-tls")
+    (version "1.0.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "scoped-tls" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1hj8lifzvivdb1z02lfnzkshpvk85nkgzxsy2hc0zky9wf894spa"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/alexcrichton/scoped-tls")
+    (synopsis "Rust library providing the old standard library's scoped_thread_local")
+    (description "This crate provides a library implementation of the standard
+library's old @code{scoped_thread_local!} macro for providing scoped access to
+@dfn{thread local storage} (TLS) so any type can be stored into TLS.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-scopeguard
+  (package
+    (name "rust-scopeguard")
+    (version "1.0.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "scopeguard" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "03aay84r1f6w87ckbpj6cc4rnsxkxcfs13n5ynxjia0qkgjiabml"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/bluss/scopeguard")
+    (synopsis "Scope guard which will run a closure even out of scope")
+    (description "This package provides a RAII scope guard that will run a
+given closure when it goes out of scope, even if the code between panics
+(assuming unwinding panic).  Defines the macros @code{defer!},
+@code{defer_on_unwind!}, @code{defer_on_success!} as shorthands for guards
+with one of the implemented strategies.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-semver-parser
+  (package
+    (name "rust-semver-parser")
+    (version "0.9.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "semver-parser" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1ahqhvgpzhcsd28id7xnrjv4419i9yyalhm7d7zi430qx0hi2vml"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/steveklabnik/semver-parser")
+    (synopsis "Parsing of the semver spec")
+    (description "This package provides for parsing of the semver spec.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-shlex
+  (package
+    (name "rust-shlex")
+    (version "0.1.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "shlex" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1lmv6san7g8dv6jdfp14m7bdczq9ss7j7bgsfqyqjc3jnjfippvz"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/comex/rust-shlex")
+    (synopsis "Split a string into shell words, like Python's shlex")
+    (description "This crate provides a method to split a string into shell
+words, like Python's shlex.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-slab
+  (package
+    (name "rust-slab")
+    (version "0.4.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "slab" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1y59xsa27jk84sxzswjk60xcjf8b4fm5960jwpznrrcmasyva4f1"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/carllerche/slab")
+    (synopsis "Pre-allocated storage for a uniform data type")
+    (description "This create provides a pre-allocated storage for a uniform
+data type.")
+    (license license:expat)))
+
+(define-public rust-spin
+  (package
+    (name "rust-spin")
+    (version "0.5.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "spin" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0m9clchsj0rf13bggsgvbv9haiy0f6rhvnvkpvkk8720a5pkydj4"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/mvdnes/spin-rs.git")
+    (synopsis "Synchronization primitives based on spinning")
+    (description "This crate provides synchronization primitives based on
+spinning.  They may contain data, are usable without @code{std},and static
+initializers are available.")
+    (license license:expat)))
+
+(define-public rust-stdweb-internal-runtime
+  (package
+    (name "rust-stdweb-internal-runtime")
+    (version "0.1.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "stdweb-internal-runtime" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1nhpyra7glbwcpakhpj5a3d7h7kx1ynif473nzshmk226m91f8ym"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/koute/stdweb")
+    (synopsis "Internal runtime for the @code{stdweb} crate")
+    (description "This crate provides internal runtime for the @code{stdweb}
+crate.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-strsim
+  (package
+    (name "rust-strsim")
+    (version "0.9.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "strsim" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1xphwhf86yxxmcpvm4mikj8ls41f6nf7gqyjm98b74mfk81h6b03"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/dguo/strsim-rs")
+    (synopsis "Rust implementations of string similarity metrics")
+    (description "This crate includes implementations of string similarity
+metrics.  It includes Hamming, Levenshtein, OSA, Damerau-Levenshtein, Jaro,
+and Jaro-Winkler.")
+    (license license:expat)))
+
+(define-public rust-synstructure-test-traits
+  (package
+    (name "rust-synstructure-test-traits")
+    (version "0.1.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "synstructure_test_traits" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1b3fs2b9kc1gy9dilaxqjbdl4z0mlrbbxjzkprdx953rif1c3q66"))))
+    (build-system cargo-build-system)
+    (home-page "https://crates.io/crates/synstructure_test_traits")
+    (synopsis "Helper test traits for synstructure doctests")
+    (description
+     "This package provides helper test traits for synstructure doctests.")
+    (license license:expat)))
+
+(define-public rust-typenum
+  (package
+    (name "rust-typenum")
+    (version "1.10.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "typenum" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0sc1jirllfhdi52z1xv9yqzxzpk6v7vadd13n7wvs1wnjipn6bb1"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/paholg/typenum")
+    (synopsis "Rust library for type-level numbers evaluated at compile time")
+    (description "Typenum is a Rust library for type-level numbers evaluated at
+compile time.  It currently supports bits, unsigned integers, and signed
+integers.  It also provides a type-level array of type-level numbers, but its
+implementation is incomplete.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-ucd-util
+  (package
+    (name "rust-ucd-util")
+    (version "0.1.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "ucd-util" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0x088q5z0m09a2jqcfgsnq955y8syn1mgn35cl78qinkxm4kp6zs"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/BurntSushi/ucd-generate")
+    (synopsis "library for working with the Unicode character database")
+    (description "This package provides a small utility library for working
+with the Unicode character database.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-unicode-width
+  (package
+    (name "rust-unicode-width")
+    (version "0.1.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "unicode-width" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "09k5lipygardwy0660jhls08fsgknrazzivmn804gps53hiqc8w8"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/unicode-rs/unicode-width")
+    (synopsis "Determine displayed width according to Unicode rules")
+    (description "This crate allows you to determine displayed width of
+@code{char} and @code{str} types according to Unicode Standard Annex #11 rules.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-unicode-xid
+  (package
+    (name "rust-unicode-xid")
+    (version "0.1.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "unicode-xid" version))
+        (file-name
+          (string-append name "-" version ".tar.gz"))
+        (sha256
+          (base32
+            "1z57lqh4s18rr4x0j4fw4fmp9hf9346h0kmdgqsqx0fhjr3k0wpw"))))
+    (build-system cargo-build-system)
+    (home-page
+      "https://github.com/unicode-rs/unicode-xid")
+    (synopsis "Determine Unicode XID related properties")
+    (description "Determine whether characters have the XID_Start
+or XID_Continue properties according to Unicode Standard Annex #31.")
+    ;; Dual licensed.
+    (license (list license:asl2.0 license:expat))))
+
+(define-public rust-unindent
+  (package
+    (name "rust-unindent")
+    (version "0.1.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "unindent" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1x21ilf78aqcq9xzb9b7i628wm10rhk0jp0chlv06rkc690l8jw3"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/dtolnay/indoc")
+    (synopsis "Remove a column of leading whitespace from a string")
+    (description "This crate allows you to remove a column of leading
+whitespace from a string.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-wasm-bindgen-shared
+  (package
+    (name "rust-wasm-bindgen-shared")
+    (version "0.2.48")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "wasm-bindgen-shared" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "08rnfhjyk0f6liv8n4rdsvhx7r02glkhcbj2lp9lcbkbfpad9hnr"))))
+    (build-system cargo-build-system)
+    (home-page "https://rustwasm.github.io/wasm-bindgen/")
+    (synopsis "Shared support between wasm-bindgen and wasm-bindgen cli")
+    (description "This package provides shared support between
+@code{wasm-bindgen} and @code{wasm-bindgen} cli, an internal dependency.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-winapi
+  (package
+    (name "rust-winapi")
+    (version "0.3.7")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "winapi" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0w7pbhcl087lkggxdflfp2i92rq89ahsfdkjkv44fgmiy9m3h3pi"))))
+    (build-system cargo-build-system)
+    (arguments
+     `(#:cargo-inputs
+       (("rust-winapi-i686-pc-windows-gnu"
+         ,rust-winapi-i686-pc-windows-gnu)
+        ("rust-winapi-x86-64-pc-windows-gnu"
+         ,rust-winapi-x86-64-pc-windows-gnu))))
+    (home-page "https://github.com/retep998/winapi-rs")
+    (synopsis "Raw FFI bindings for all of Windows API.")
+    (description
+     "Raw FFI bindings for all of Windows API.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-winapi-i686-pc-windows-gnu
+  (package
+    (name "rust-winapi-i686-pc-windows-gnu")
+    (version "0.4.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "winapi-i686-pc-windows-gnu" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1dmpa6mvcvzz16zg6d5vrfy4bxgg541wxrcip7cnshi06v38ffxc"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/retep998/winapi-rs")
+    (synopsis "Import libraries for the i686-pc-windows-gnu target")
+    (description "This crate provides import libraries for the
+i686-pc-windows-gnu target.  Please don't use this crate directly, depend on
+@code{winapi} instead.")
+    (license (list license:asl2.0
+                   license:expat))))
+
+(define-public rust-winapi-x86-64-pc-windows-gnu
+  (package
+    (name "rust-winapi-x86-64-pc-windows-gnu")
+    (version "0.4.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (crate-uri "winapi-x86_64-pc-windows-gnu" version))
+        (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0gqq64czqb64kskjryj8isp62m2sgvx25yyj3kpc2myh85w24bki"))))
+    (build-system cargo-build-system)
+    (home-page "https://github.com/retep998/winapi-rs")
+    (synopsis "Import libraries for the x86_64-pc-windows-gnu target")
+    (description "This package provides import libraries for the
+x86_64-pc-windows-gnu target.  Please don't use this crate directly, depend on
+@code{winapi} instead.")
+    (license (list license:asl2.0
+                   license:expat))))
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 30e27dcea2..6ced8ac184 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -132,12 +132,13 @@
     (name "4store")
     (version "1.1.6")
     (source (origin
-      (method url-fetch)
-      (uri (string-append "https://github.com/4store/4store/archive/v"
-                          version ".tar.gz"))
-      (file-name (string-append name "-" version ".tar.gz"))
+      (method git-fetch)
+      (uri (git-reference
+             (url "https://github.com/4store/4store.git")
+             (commit (string-append "v" version))))
+      (file-name (git-file-name name version))
       (sha256
-       (base32 "004fmcf1w75zhc1x3zc6kc97j4jqn2v5nhk6yb3z3cpfrhzi9j50"))
+       (base32 "1kzdfmwpzy64cgqlkcz5v4klwx99w0jk7afckyf7yqbqb4rydmpk"))
       (patches (search-patches "4store-unset-preprocessor-directive.patch"
                                "4store-fix-buildsystem.patch"))))
     (build-system gnu-build-system)
@@ -160,12 +161,6 @@
        ("cyrus-sasl" ,cyrus-sasl)
        ("openssl" ,openssl)
        ("util-linux" ,util-linux)))
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'generate-configure
-           (lambda _
-             (invoke "sh" "autogen.sh"))))))
     ;; http://www.4store.org has been down for a while now.
     (home-page "https://github.com/4store/4store")
     (synopsis "Clustered RDF storage and query engine")
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 213dac78f6..6e612cab56 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -51,6 +51,7 @@
 ;;; Copyright © 2019 Baptiste Strazzulla <bstrazzull@hotmail.fr>
 ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autitici.org>
 ;;; Copyright © 2019 Jens Mølgaard <jens@zete.tk>
+;;; Copyright © 2019 Amin Bandali <bandali@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -876,7 +877,7 @@ in certain cases.  It also enables recursion for anonymous functions.")
 (define-public emacs-xr
   (package
     (name "emacs-xr")
-    (version "1.12")
+    (version "1.13")
     (source
      (origin
        (method url-fetch)
@@ -884,7 +885,7 @@ in certain cases.  It also enables recursion for anonymous functions.")
              "https://elpa.gnu.org/packages/xr-" version ".tar"))
        (sha256
         (base32
-         "1vv87h0h8ldc1mbsn45w5z1m6jq8j2js4xz23a9ixdby06g60y3g"))))
+         "1km4x92pii8c4bcimks4xzhmwpypdf183z0zh7raj062jz4jb74r"))))
     (build-system emacs-build-system)
     (home-page "http://elpa.gnu.org/packages/xr.html")
     (synopsis "Convert string regexp to rx notation")
@@ -929,7 +930,7 @@ optional minor mode which can apply this command automatically on save.")
 (define-public emacs-relint
   (package
     (name "emacs-relint")
-    (version "1.8")
+    (version "1.10")
     (source
      (origin
        (method url-fetch)
@@ -937,7 +938,7 @@ optional minor mode which can apply this command automatically on save.")
              "https://elpa.gnu.org/packages/relint-" version ".el"))
        (sha256
         (base32
-         "1bl6m2h7131acbmr0kqfnjjpv2syiv2mxfnm61g874ynnvkmmkm3"))))
+         "1l0lh4pkksw7brmhhbaikwzs4zkgd2962ks1zy7m262dvkhxjfv8"))))
     (build-system emacs-build-system)
     (propagated-inputs `(("emacs-xr" ,emacs-xr)))
     (home-page "https://github.com/mattiase/relint")
@@ -2473,7 +2474,7 @@ column by drawing a thin line down the length of the editing window.")
 (define-public emacs-inf-ruby
   (package
     (name "emacs-inf-ruby")
-    (version "2.5.1")
+    (version "2.5.2")
     (source
      (origin
        (method git-fetch)
@@ -2482,7 +2483,7 @@ column by drawing a thin line down the length of the editing window.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1r452h6cyypqlc59q8dx5smkwhck4qjcg1pf9qdw539cpva5q77z"))))
+        (base32 "0a1hhvfbl6mq8rjsi77fg9fh5a91hi5scjrg9rjqc5ffbql67y0v"))))
     (build-system emacs-build-system)
     (home-page "https://github.com/nonsequitur/inf-ruby")
     (synopsis "Provides a REPL buffer connected to a Ruby subprocess in Emacs")
@@ -11971,7 +11972,7 @@ downloading manager for Emacs.")
 (define-public emacs-helpful
   (package
     (name "emacs-helpful")
-    (version "0.16")
+    (version "0.17")
     (source
      (origin
        (method git-fetch)
@@ -11980,7 +11981,7 @@ downloading manager for Emacs.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1pzlx3galyryd3hd84hnd7r5s6yl9sdrfhy1s6dgz40glw41wmpr"))))
+        (base32 "0v2y0x9pwi08y2mgjjiw5brfb5haa7pbmy4540glw904ffxxcblj"))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-elisp-refs" ,emacs-elisp-refs)
@@ -13985,12 +13986,13 @@ accept and reject GitHub pull requests.")
       (license license:gpl3+))))
 
 (define-public emacs-deadgrep
-  (let ((commit "caeb37b8d6ab83f0eba353d6bbb29678190d4419")
-        (version "0.7")
+  ;; We prefer a newer commit (four commits newer than release) because of a
+  ;; bugfix for globbing.
+  (let ((commit "329119c65126f7917d3910bc584f4191ba8f21ac")
         (revision "1"))
     (package
       (name "emacs-deadgrep")
-      (version (git-version version revision commit))
+      (version (git-version "0.8" revision commit))
       (source
        (origin
          (method git-fetch)
@@ -14000,7 +14002,7 @@ accept and reject GitHub pull requests.")
          (file-name (git-file-name name version))
          (sha256
           (base32
-           "158fqha8nilwfzmw15lcsq8b099j8wclzq303md0j4mfr2q2gfvs"))))
+           "0fxf7gq9sjfkgpdfqx10w3l3nd4rwa8kv9plyxk1fqacb3s5m6ai"))))
       (build-system emacs-build-system)
       (inputs
        `(("emacs-dash" ,emacs-dash)
@@ -17111,6 +17113,29 @@ convert the resulting @code{.epub} to a @code{.mobi} file.  Needs a working
 zip utility (default is @code{zip}).")
     (license license:gpl3+)))
 
+(define-public emacs-ox-hugo
+  (package
+    (name "emacs-ox-hugo")
+    (version "0.8")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/kaushalmodi/ox-hugo.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "11h464cyc28ld0b0zridgm4drydc1qjxbm1y24zrwlkyqqjk6yr7"))))
+    (build-system emacs-build-system)
+    (home-page "https://ox-hugo.scripter.co")
+    (synopsis "Hugo markdown back-end for Org export engine")
+    (description
+     "Ox-hugo is an Org exporter backend that exports Org to Hugo-compatible
+Markdown, Blackfriday, and also generates the front-matter in TOML or YAML
+format.")
+    (license license:gpl3+)))
+
 (define-public emacs-ox-pandoc
   (package
     (name "emacs-ox-pandoc")
@@ -17191,3 +17216,28 @@ time.")
     (description "@code{mastodon.el} is an Emacs client for Mastodon, the
 federated microblogging social network.")
     (license license:gpl3+)))
+
+;; The last release tarball is for version 0.6.  We pick a commit close to
+;; version 0.6.10, which doesn't have a release tarball.
+(define-public emacs-ebdb
+  (let ((commit "2a87f5ed2a53e3a4e91e8c88ba5afc49f5e945df")
+        (revision "0"))
+    (package
+      (name "emacs-ebdb")
+      (version (git-version "0.6.10" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/girzel/ebdb.git")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0fidy7z0c86dpqiss97sg5s92fd3fj4bdl8pqqdgg2m00jx4mrjz"))))
+      (build-system emacs-build-system)
+      (home-page "https://github.com/girzel/ebdb")
+      (synopsis "EIEIO port of BBDB, Emacs's contact-management package")
+      (description "EBDB is a contact management/addressbook package for
+Emacs.  It's a re-write of the Insidious Big Brother Database (BBDB) using
+Emacs Lisp's (relatively new) EIEIO object oriented libraries.")
+      (license license:gpl3+))))
diff --git a/gnu/packages/emulators.scm b/gnu/packages/emulators.scm
index 257591c8d3..388611d1d8 100644
--- a/gnu/packages/emulators.scm
+++ b/gnu/packages/emulators.scm
@@ -1185,7 +1185,7 @@ play them on systems for which they were never designed!")
 (define-public mame
   (package
     (name "mame")
-    (version "0.211")
+    (version "0.212")
     (source
      (origin
        (method git-fetch)
@@ -1195,7 +1195,11 @@ play them on systems for which they were never designed!")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0gbxgncbzmmplijg0c1ibwsb87fbmfvs1kjflh002yyx8yvfw83z"))
+         "0p3zcb9l624dsy2gyv23ppp1k1iwd1vrg8cbn5v4fx1s44mx7f5c"))
+       (patches
+       ;; FIXME: Remove once 0.213 is out.  Applied upstream as
+       ;; 0b5b13cf1e28550b49c387dec93f9801f029e313.
+        (search-patches "mame-rapidjson-fix.patch"))
        (modules '((guix build utils)))
        (snippet
         ;; Remove bundled libraries.
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 7d48414889..a1f222bed4 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -11,6 +11,7 @@
 ;;; Copyright © 2018, 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
 ;;; Copyright © 2018, 2019 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2019 Tim Stahel <swedneck@swedneck.xyz>
+;;; Copyright © 2019 Jovany Leandro G.C <bit4bit@riseup.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -2062,3 +2063,49 @@ purpose circuit simulator and can perform DC and transient analyses, fourier
 analysis and AC analysis.  The engine is designed to do true mixed-mode
 simulation.")
     (license license:gpl3+)))
+
+(define-public cutter
+  (package
+    (name "cutter")
+    (version "1.8.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/radareorg/cutter")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "03f3cdckh51anx9gd1b0ndb2fg7061hqngvygf32ky29mm2m2lyv"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out"))
+                   (radare2 (assoc-ref inputs "radare2")))
+               ;; fix pkg-config detection ./src/lib_radare2.pri:PREFIX=/usr/lib
+               ;; override `qmake PREFIX=`
+               (substitute* "./src/lib_radare2.pri"
+                 (("PREFIX") "R2PREFIX")
+                 (("R2PREFIX=/usr") (string-append "R2PREFIX=" radare2)))
+               (invoke "qmake"
+                       (string-append "PREFIX=" out)
+                       "./src/Cutter.pro")))))))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("qtbase" ,qtbase)
+       ("qtsvg" ,qtsvg)
+       ("openssl" ,openssl)
+       ("radare2" ,radare2)))
+    (home-page "https://github.com/radareorg/cutter")
+    (synopsis "GUI for radare2 reverse engineering framework")
+    (description "Cutter is a GUI for radare2 reverse engineering framework.
+Its goal is making an advanced andcustomizable reverse-engineering platform
+while keeping the user experience at mind.  Cutter is created by reverse
+engineers for reverse engineers.")
+    (license (list license:cc-by-sa3.0  ;the "Iconic" icon set
+                   license:gpl3+))))    ;everything else
diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 2163ea2152..7bfe5e62ff 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -356,7 +356,7 @@ do so.")
 (define-public electrum
   (package
     (name "electrum")
-    (version "3.3.6")
+    (version "3.3.8")
     (source
      (origin
        (method url-fetch)
@@ -364,7 +364,7 @@ do so.")
                            version "/Electrum-"
                            version ".tar.gz"))
        (sha256
-        (base32 "0am5ki3z0yvhrz16vp2jjy5fkxxqph0mj9qqpbw3kpql65shykwz"))
+        (base32 "1g00cj1pmckd4xis8r032wmraiv3vd3zc803hnyxa2bnhj8z3bg2"))
        (modules '((guix build utils)))
        (snippet
         '(begin
diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm
index 2dc791c784..2dc1df45c8 100644
--- a/gnu/packages/fonts.scm
+++ b/gnu/packages/fonts.scm
@@ -638,7 +638,7 @@ for use at smaller text sizes")))
 (define-public font-gnu-unifont
   (package
     (name "font-gnu-unifont")
-    (version "12.1.02")
+    (version "12.1.03")
     (source
      (origin
        (method url-fetch)
@@ -648,7 +648,7 @@ for use at smaller text sizes")))
              (string-append "mirror://gnu/unifont/unifont-"
                             version "/unifont-" version ".tar.gz")))
        (sha256
-        (base32 "12wdxnlyz5gl5d7h6pazcz8d7h81fwkng1xrayxsgrzh6bqdq4p8"))))
+        (base32 "10mr3ax19v5pa6a791fk2j3k45fpa8n5r36kq9gs8lk95wfnxmf1"))))
     (build-system gnu-build-system)
     (outputs '("out"   ; TrueType version
                "pcf"   ; PCF (bitmap) version
diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm
index c67ef036ee..01de446ce0 100644
--- a/gnu/packages/golang.scm
+++ b/gnu/packages/golang.scm
@@ -1222,8 +1222,8 @@ for a variety of protocols to proxy network data.")
       (license license:bsd-3))))
 
 (define-public go-golang-org-x-sys-unix
-  (let ((commit "5ed2794edfdc1c54dfb61d619c5944285f35d444")
-        (revision "3"))
+  (let ((commit "04f50cda93cbb67f2afa353c52f342100e80e625")
+        (revision "4"))
     (package
       (name "go-golang-org-x-sys-unix")
       (version (git-version "0.0.0" revision commit))
@@ -1235,7 +1235,7 @@ for a variety of protocols to proxy network data.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "1qy8hmv5nwpcywk7sh1pg0s32jwpd4ykh492xzl4mmxy8galwsr5"))))
+                  "0hmfsz9y1ingwsn482hlzzmzs7kr3cklm0ana0mbdk70isw2bxnw"))))
       (build-system go-build-system)
       (arguments
        `(#:import-path "golang.org/x/sys/unix"
@@ -3621,7 +3621,7 @@ error handling primitives in Go.")
 (define-public go-github-com-maruel-panicparse
   (package
     (name "go-github-com-maruel-panicparse")
-    (version "1.2.1")
+    (version "1.3.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -3630,7 +3630,7 @@ error handling primitives in Go.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "05hf68ifb7ww4rpmxyywbj9r0kyap45p1273ncq4qy2ydv042l8j"))))
+                "13qkn7f64yln8jdmma37h6ra4c7anxkp3vfgvfyb6lb07dpr1ibq"))))
     (build-system go-build-system)
     (arguments
      '(#:import-path "github.com/maruel/panicparse"))
diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm
index 6dcdcedccf..8c36658361 100644
--- a/gnu/packages/guile-xyz.scm
+++ b/gnu/packages/guile-xyz.scm
@@ -907,27 +907,30 @@ tracker's SOAP service, such as @url{https://bugs.gnu.org}.")
 (define-public guile-email
   (package
     (name "guile-email")
-    (version "0.1.0")
+    (version "0.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
-             "https://git.systemreboot.net/guile-email/snapshot/guile-email-"
-             version ".tar.xz"))
+             "https://guile-email.systemreboot.net/releases/guile-email-"
+             version ".tar.lz"))
        (sha256
         (base32
-         "0p2v8q2kkz8m6vf2rsjvz3dj1mvnx7dxakjf72dwkndbgk3rp79f"))))
+         "05pm0rwdxhjdlpmvhn0kyfslph6j5m1gv76givs0hshb30nirl2x"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)
-       ("autoconf" ,autoconf)
-       ("automake" ,automake)))
+       ("lzip" ,lzip)))
     (inputs
      `(("guile" ,guile-2.2)))
-    (home-page "https://git.systemreboot.net/guile-email")
+    (arguments
+     '(#:make-flags '("GUILE_AUTO_COMPILE=0"))) ; to prevent guild warnings
+    (home-page "https://guile-email.systemreboot.net")
     (synopsis "Guile email parser")
-    (description "This package provides an email parser written in pure
-Guile.")
+    (description "guile-email is a collection of email utilities implemented
+in pure guile.  It supports parsing MIME (Multipurpose Internet Mail
+Extensions) compliant email messages and reading emails from the mbox
+format.")
     (license license:agpl3+)))
 
 (define-public guile-debbugs-next
diff --git a/gnu/packages/haskell-apps.scm b/gnu/packages/haskell-apps.scm
index e01f796178..e77f6d113b 100644
--- a/gnu/packages/haskell-apps.scm
+++ b/gnu/packages/haskell-apps.scm
@@ -6,6 +6,7 @@
 ;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
+;;; Copyright © 2019 Kyle Meyer <kyle@kyleam.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -142,7 +143,7 @@ unique algebra of patches called @url{http://darcs.net/Theory,Patchtheory}.
 (define-public git-annex
   (package
     (name "git-annex")
-    (version "6.20180926")
+    (version "7.20190708")
     (source
      (origin
        (method url-fetch)
@@ -150,15 +151,20 @@ unique algebra of patches called @url{http://darcs.net/Theory,Patchtheory}.
                            "git-annex/git-annex-" version ".tar.gz"))
        (sha256
         (base32
-         "1251rj8h63y30sfqk0zh670yhz14p256y59n3590pg015pf3575d"))))
+         "18s563swrp8mx479995pdhhmn40y3xwlbm1z3w63qsnjqmj7zlij"))))
     (build-system haskell-build-system)
     (arguments
      `(#:configure-flags
        '("--flags=-Android -Assistant -Pairing -S3 -Webapp -WebDAV")
        #:phases
        (modify-phases %standard-phases
-         (add-before 'configure 'patch-shell
+         (add-before 'configure 'patch-shell-for-tests
            (lambda _
+             ;; Shell.hs defines "/bin/sh" that is used in Git hooks.  We
+             ;; shouldn't patch hooks with Guix's current bash because the
+             ;; hooks can exist after that bash is garbage collected, but
+             ;; let's temporarily patch it so that we can run the tests.
+             (copy-file "Utility/Shell.hs" "/tmp/Shell.hs")
              (substitute* "Utility/Shell.hs"
                (("/bin/sh") (which "sh")))
              #t))
@@ -192,6 +198,11 @@ unique algebra of patches called @url{http://darcs.net/Theory,Patchtheory}.
                (symlink "git-annex" "git-annex-shell"))
              (invoke "git-annex" "test")
              #t))
+         (add-after 'check 'unpatch-shell-and-rebuild
+           (lambda args
+             ;; Undo `patch-shell-for-tests'.
+             (copy-file "/tmp/Shell.hs" "Utility/Shell.hs")
+             (apply (assoc-ref %standard-phases 'build) args)))
          (add-after 'install 'install-symlinks
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
@@ -208,6 +219,7 @@ unique algebra of patches called @url{http://darcs.net/Theory,Patchtheory}.
        ("ghc-bloomfilter" ,ghc-bloomfilter)
        ("ghc-byteable" ,ghc-byteable)
        ("ghc-case-insensitive" ,ghc-case-insensitive)
+       ("ghc-concurrent-output" ,ghc-concurrent-output)
        ("ghc-crypto-api" ,ghc-crypto-api)
        ("ghc-cryptonite" ,ghc-cryptonite)
        ("ghc-data-default" ,ghc-data-default)
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index a5b9f6bfed..301979a7a5 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -350,42 +350,42 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS."
                         "linux-" version ".tar.xz"))
     (sha256 hash)))
 
-(define-public linux-libre-5.2-version "5.2.7")
+(define-public linux-libre-5.2-version "5.2.8")
 (define-public linux-libre-5.2-pristine-source
   (let ((version linux-libre-5.2-version)
-        (hash (base32 "1aazhf0v8bv4py0wnqkdmiy80fchnix431l0hda2fkwsdf9njgnv")))
+        (hash (base32 "0dv91zfjkil29lp2l35lswkrhrqbc4kjh965ciaqwih1rh3cs9x1")))
    (make-linux-libre-source version
                             (%upstream-linux-source version hash)
                             deblob-scripts-5.2)))
 
-(define-public linux-libre-4.19-version "4.19.65")
+(define-public linux-libre-4.19-version "4.19.66")
 (define-public linux-libre-4.19-pristine-source
   (let ((version linux-libre-4.19-version)
-        (hash (base32 "1pyyhr2airxzk4c6n7140yl723dc7yw7igy5i5i2ih0nd4c3k6g5")))
+        (hash (base32 "0r6vzarmi77fhivd1n6f667sgcw8zd54ykmhmp6rd52bbkhsp0f9")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.19)))
 
-(define-public linux-libre-4.14-version "4.14.137")
+(define-public linux-libre-4.14-version "4.14.138")
 (define-public linux-libre-4.14-pristine-source
   (let ((version linux-libre-4.14-version)
-        (hash (base32 "0a72pab0zxy28i02glnzj6avzcf0a4gxxnadbdd343rh549yky4k")))
+        (hash (base32 "0yw39cqpk6g42q0xcv2aq8yyzsi0kzx9nvlfbw0iyg58wcfvsl7j")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.14)))
 
-(define-public linux-libre-4.9-version "4.9.188")
+(define-public linux-libre-4.9-version "4.9.189")
 (define-public linux-libre-4.9-pristine-source
   (let ((version linux-libre-4.9-version)
-        (hash (base32 "08p2cfc9982b804vmkapfasgipf6969g625ih7z3062xn99rhlr7")))
+        (hash (base32 "1cyhwnxkjd0qa5d48657yppjnzbi830q0p25jjv2dxs629k4bnck")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.9)))
 
-(define-public linux-libre-4.4-version "4.4.188")
+(define-public linux-libre-4.4-version "4.4.189")
 (define-public linux-libre-4.4-pristine-source
   (let ((version linux-libre-4.4-version)
-        (hash (base32 "1llxamm62kgqd7dig98n8m16qas8dd8rrkmwpfcdgyf8rag216ff")))
+        (hash (base32 "0nc8v62gw89m3ykqg6nqf749fzm8y1n481ns8vny4gbinyikjhlp")))
     (make-linux-libre-source version
                              (%upstream-linux-source version hash)
                              deblob-scripts-4.4)))
diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm
index 51c674cb31..5468ba901e 100644
--- a/gnu/packages/mpd.scm
+++ b/gnu/packages/mpd.scm
@@ -91,7 +91,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
 (define-public mpd
   (package
     (name "mpd")
-    (version "0.21.11")
+    (version "0.21.13")
     (source (origin
               (method url-fetch)
               (uri
@@ -100,7 +100,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
                               "/mpd-" version ".tar.xz"))
               (sha256
                (base32
-                "1gbcg8icm0pp918jw1lx1j066m39zg9wyqjla328ic848j5zhbnk"))))
+                "1sjyhmq50nlccwmd8xn7m0bk8xvyixvfyr24v9dy3g86hhk0pdwm"))))
     (build-system meson-build-system)
     (arguments
      `(#:configure-flags '("-Ddocumentation=true") ; the default is 'false'...
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index ac9ed91722..3b003fd30f 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -563,16 +563,16 @@ transactions from C or Python.")
 (define-public diffoscope
   (package
     (name "diffoscope")
-    (version "116")
+    (version "120")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://salsa.debian.org/reproducible-builds/diffoscope.git")
-                    (commit "116")))
+                    (commit "120")))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1anz2c112y0w21mh7xp6bs6z7v10dcy1i25nypkvqy3j929m0g28"))))
+                "07z9yclvfkw4326739l2ywzzihax5vdijiaqqpfix9rz1rb923aa"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
diff --git a/gnu/packages/patches/isc-dhcp-4.4.1-fixes-for-newer-bind.patch b/gnu/packages/patches/isc-dhcp-4.4.1-fixes-for-newer-bind.patch
new file mode 100644
index 0000000000..53e681ea31
--- /dev/null
+++ b/gnu/packages/patches/isc-dhcp-4.4.1-fixes-for-newer-bind.patch
@@ -0,0 +1,100 @@
+These fixes are needed to adapt isc-dhcp-4.4.1 to build
+successfully after its bundled copy of bind has been updated.
+
+It is derived from the following upstream commits:
+
+commit 8194daabfd590f17825f0c61e9534bee5c99cc86
+Author: Thomas Markwalder <tmark@isc.org>
+Date:   Fri Sep 14 13:41:14 2018 -0400
+
+  [master] Added includes of new BIND9 compatibility headers, updated util/bind.sh
+  
+      Merges in rt48072.
+
+commit cc35f84943df44dac2499f3e16e8aaba7d54191d
+Author: Thomas Markwalder <tmark@isc.org>
+Date:   Tue Mar 19 08:36:23 2019 -0400
+
+  [master] Avoid Bind9 python dependency
+  
+      merges [#3,!1] Avoid Bind9 python dependency
+
+--- a/bind/Makefile.in
++++ b/bind/Makefile.in
+@@ -23,7 +23,7 @@ exec_prefix = @exec_prefix@
+ 
+ bindconfig = --without-openssl --without-libxml2 --without-libjson \
+ 	--without-gssapi --disable-threads --without-lmdb \
+-	--includedir=@includedir@ --libdir=@libdir@ \
++	--includedir=@includedir@ --libdir=@libdir@  --without-python\
+ 	@BINDLT@ @BINDIOMUX@ @BINDCONFIG@ --enable-full-report
+ 
+ @BIND_ATF_FALSE@cleandirs = ./lib ./include
+diff --git a/includes/omapip/isclib.h b/includes/omapip/isclib.h
+index 75a87ff6..538b927f 100644
+--- a/includes/omapip/isclib.h
++++ b/includes/omapip/isclib.h
+@@ -48,6 +48,9 @@
+ #include <string.h>
+ #include <netdb.h>
+ 
++#include <isc/boolean.h>
++#include <isc/int.h>
++
+ #include <isc/buffer.h>
+ #include <isc/lex.h>
+ #include <isc/lib.h>
+diff --git a/includes/omapip/result.h b/includes/omapip/result.h
+index 91243e1b..860298f6 100644
+--- a/includes/omapip/result.h
++++ b/includes/omapip/result.h
+@@ -26,6 +26,7 @@
+ #ifndef DHCP_RESULT_H
+ #define DHCP_RESULT_H 1
+ 
++#include <isc/boolean.h>
+ #include <isc/lang.h>
+ #include <isc/resultclass.h>
+ #include <isc/types.h>
+diff --git a/server/dhcpv6.c b/server/dhcpv6.c
+index a7110f98..cde4f617 100644
+--- a/server/dhcpv6.c
++++ b/server/dhcpv6.c
+@@ -1034,7 +1034,8 @@ void check_pool6_threshold(struct reply_state *reply,
+ 				  shared_name,
+ 				  inet_ntop(AF_INET6, &lease->addr,
+ 					    tmp_addr, sizeof(tmp_addr)),
+-				  used, count);
++				  (long long unsigned)(used),
++				  (long long unsigned)(count));
+ 		}
+ 		return;
+ 	}
+@@ -1066,7 +1067,8 @@ void check_pool6_threshold(struct reply_state *reply,
+ 		  "address: %s; high threshold %d%% %llu/%llu.",
+ 		  shared_name,
+ 		  inet_ntop(AF_INET6, &lease->addr, tmp_addr, sizeof(tmp_addr)),
+-		  poolhigh, used, count);
++		  poolhigh, (long long unsigned)(used),
++		  (long long unsigned)(count));
+ 
+ 	/* handle the low threshold now, if we don't
+ 	 * have one we default to 0. */
+@@ -1436,12 +1438,15 @@ pick_v6_address(struct reply_state *reply)
+ 		log_debug("Unable to pick client address: "
+ 			  "no addresses available  - shared network %s: "
+ 			  " 2^64-1 < total, %llu active,  %llu abandoned",
+-			  shared_name, active - abandoned, abandoned);
++			  shared_name, (long long unsigned)(active - abandoned),
++			  (long long unsigned)(abandoned));
+ 	} else {
+ 		log_debug("Unable to pick client address: "
+ 			  "no addresses available  - shared network %s: "
+ 			  "%llu total, %llu active,  %llu abandoned",
+-			  shared_name, total, active - abandoned, abandoned);
++			  shared_name, (long long unsigned)(total),
++			  (long long unsigned)(active - abandoned),
++		          (long long unsigned)(abandoned));
+ 	}
+ 
+ 	return ISC_R_NORESOURCES;
diff --git a/gnu/packages/patches/mame-rapidjson-fix.patch b/gnu/packages/patches/mame-rapidjson-fix.patch
new file mode 100644
index 0000000000..70cf8458ea
--- /dev/null
+++ b/gnu/packages/patches/mame-rapidjson-fix.patch
@@ -0,0 +1,37 @@
+From 0b5b13cf1e28550b49c387dec93f9801f029e313 Mon Sep 17 00:00:00 2001
+From: Julian Sikorski <belegdol+github@gmail.com>
+Date: Mon, 5 Aug 2019 21:16:54 +0200
+Subject: [PATCH] Fix building using system rapidjson
+
+---
+ scripts/target/mame/arcade.lua | 1 +
+ src/mame/video/midtunit.cpp    | 4 ++--
+ 2 files changed, 3 insertions(+), 2 deletions(-)
+
+diff --git a/scripts/target/mame/arcade.lua b/scripts/target/mame/arcade.lua
+index 964daa3572f..ef30ae3c2c2 100644
+--- a/scripts/target/mame/arcade.lua
++++ b/scripts/target/mame/arcade.lua
+@@ -930,6 +930,7 @@ function createMAMEProjects(_target, _subtarget, _name)
+ 		ext_includedir("flac"),
+ 		ext_includedir("glm"),
+ 		ext_includedir("jpeg"),
++		ext_includedir("rapidjson"),
+ 	}
+ 
+ end
+diff --git a/src/mame/video/midtunit.cpp b/src/mame/video/midtunit.cpp
+index b4cb98abacf..b307f3f722b 100644
+--- a/src/mame/video/midtunit.cpp
++++ b/src/mame/video/midtunit.cpp
+@@ -20,8 +20,8 @@
+ #include "emuopts.h" // Used by PNG logging
+ #include "png.h" // Used by PNG logging
+ 
+-#include "rapidjson/include/rapidjson/prettywriter.h" // Used by JSON logging
+-#include "rapidjson/include/rapidjson/stringbuffer.h" // Used by JSON logging
++#include <rapidjson/prettywriter.h> // Used by JSON logging
++#include <rapidjson/stringbuffer.h> // Used by JSON logging
+ 
+ DEFINE_DEVICE_TYPE(MIDTUNIT_VIDEO, midtunit_video_device, "tunitvid", "Midway T-Unit Video")
+ DEFINE_DEVICE_TYPE(MIDWUNIT_VIDEO, midwunit_video_device, "wunitvid", "Midway W-Unit Video")
diff --git a/gnu/packages/patches/scribus-poppler.patch b/gnu/packages/patches/scribus-poppler.patch
deleted file mode 100644
index 9b969e4cb6..0000000000
--- a/gnu/packages/patches/scribus-poppler.patch
+++ /dev/null
@@ -1,72 +0,0 @@
-Fix build with recent Poppler.
-
-From d867ec3c386baaed1b8e076dd70b278863411480 Mon Sep 17 00:00:00 2001
-From: Jean Ghali <jghali@libertysurf.fr>
-Date: Mon, 30 Apr 2018 09:19:33 +0000
-Subject: [PATCH] =?UTF-8?q?#15289:=20FTBFS=201.5.4=20with=20error:=20inval?=
- =?UTF-8?q?id=20conversion=20from=20=E2=80=98const=20GooString*=E2=80=99?=
- =?UTF-8?q?=20to=20=E2=80=98GooString*=E2=80=99?=
-MIME-Version: 1.0
-Content-Type: text/plain; charset=UTF-8
-Content-Transfer-Encoding: 8bit
-
-git-svn-id: svn://scribus.net/trunk/Scribus@22498 11d20701-8431-0410-a711-e3c959e3b870
----
- scribus/plugins/import/pdf/importpdf.cpp | 2 +-
- scribus/plugins/import/pdf/importpdf.h   | 2 +-
- scribus/plugins/import/pdf/slaoutput.cpp | 2 +-
- scribus/plugins/import/pdf/slaoutput.h   | 2 +-
- 4 files changed, 4 insertions(+), 4 deletions(-)
-
-diff --git a/scribus/plugins/import/pdf/importpdf.cpp b/scribus/plugins/import/pdf/importpdf.cpp
-index c1802861aa..d4c5a9ba49 100644
---- a/scribus/plugins/import/pdf/importpdf.cpp
-+++ b/scribus/plugins/import/pdf/importpdf.cpp
-@@ -1081,7 +1081,7 @@ QRectF PdfPlug::getCBox(int box, int pgNum)
- 	return cRect;

- }

- 

--QString PdfPlug::UnicodeParsedString(GooString *s1)

-+QString PdfPlug::UnicodeParsedString(const GooString *s1)

- {

- 	if ( !s1 || s1->getLength() == 0 )

- 		return QString();

-diff --git a/scribus/plugins/import/pdf/importpdf.h b/scribus/plugins/import/pdf/importpdf.h
-index c8c5efcd0d..5249562692 100644
---- a/scribus/plugins/import/pdf/importpdf.h
-+++ b/scribus/plugins/import/pdf/importpdf.h
-@@ -81,7 +81,7 @@ class PdfPlug : public QObject
- private:
- 	bool convert(const QString& fn);
- 	QRectF getCBox(int box, int pgNum);
--	QString UnicodeParsedString(GooString *s1);
-+	QString UnicodeParsedString(const GooString *s1);
- 	
- 	QList<PageItem*> Elements;
- 	double baseX, baseY;
-diff --git a/scribus/plugins/import/pdf/slaoutput.cpp b/scribus/plugins/import/pdf/slaoutput.cpp
-index be1815dc29..17b6357246 100644
---- a/scribus/plugins/import/pdf/slaoutput.cpp
-+++ b/scribus/plugins/import/pdf/slaoutput.cpp
-@@ -4252,7 +4252,7 @@ void SlaOutputDev::pushGroup(QString maskName, GBool forSoftMask, GBool alpha, b
- 	m_groupStack.push(gElements);

- }

- 

--QString SlaOutputDev::UnicodeParsedString(GooString *s1)

-+QString SlaOutputDev::UnicodeParsedString(const GooString *s1)

- {

- 	if ( !s1 || s1->getLength() == 0 )

- 		return QString();

-diff --git a/scribus/plugins/import/pdf/slaoutput.h b/scribus/plugins/import/pdf/slaoutput.h
-index 20e8b2d311..6698c030e0 100644
---- a/scribus/plugins/import/pdf/slaoutput.h
-+++ b/scribus/plugins/import/pdf/slaoutput.h
-@@ -266,7 +266,7 @@ class SlaOutputDev : public OutputDev
- 	int getBlendMode(GfxState *state);
- 	void applyMask(PageItem *ite);
- 	void pushGroup(QString maskName = "", GBool forSoftMask = gFalse, GBool alpha = gFalse, bool inverted = false);
--	QString UnicodeParsedString(GooString *s1);
-+	QString UnicodeParsedString(const GooString *s1);
- 	bool checkClip();
- 	bool pathIsClosed;
- 	QString CurrColorFill;
diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm
index de447b9486..d45a78222c 100644
--- a/gnu/packages/pdf.scm
+++ b/gnu/packages/pdf.scm
@@ -419,7 +419,7 @@ using the DjVuLibre library.")
 (define-public zathura-pdf-mupdf
   (package
     (name "zathura-pdf-mupdf")
-    (version "0.3.4")
+    (version "0.3.5")
     (source (origin
               (method url-fetch)
               (uri
@@ -427,7 +427,7 @@ using the DjVuLibre library.")
                               "/download/zathura-pdf-mupdf-" version ".tar.xz"))
               (sha256
                (base32
-                "166d5nz47ixzwj4pixsd5fd9qvjf5v34cdqi3p72vr23pswk2hyn"))))
+                "1pjwsb7zwclxsvz229fl7y2saf1pv3ifwv3ay8viqxgrp9x3z9hq"))))
     (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs
      `(("jbig2dec" ,jbig2dec)
@@ -604,7 +604,7 @@ extracting content or merging files.")
 (define-public mupdf
   (package
     (name "mupdf")
-    (version "1.15.0")
+    (version "1.16.1")
     (source
       (origin
         (method url-fetch)
@@ -612,7 +612,7 @@ extracting content or merging files.")
                             name "-" version "-source.tar.xz"))
         (sha256
          (base32
-          "0kmcz3ivxmqmks8vg50ri1zar18q5svk829z0g1kj08lgz7kcl2n"))
+          "1npmy92lkj41nnc14b4fpq7z62pminy94zsdbrczj22jpn283rvg"))
         (modules '((guix build utils)))
         (snippet
          ;; We keep lcms2 since it is different than our lcms.
diff --git a/gnu/packages/scribus.scm b/gnu/packages/scribus.scm
index 20795da275..25122c10ae 100644
--- a/gnu/packages/scribus.scm
+++ b/gnu/packages/scribus.scm
@@ -47,7 +47,7 @@
 (define-public scribus
   (package
     (name "scribus")
-    (version "1.5.4")
+    (version "1.5.5")
     (source
      (origin
        (method url-fetch)
@@ -55,60 +55,7 @@
                            version "/scribus-" version ".tar.xz"))
        (sha256
         (base32
-         "00ys0p6h3iq77kh72dkl0qrf7qvznq18qdrgiq10gfxja1995034"))
-       (patches (append
-                 ;; Scribus relies heavily on Poppler internals, which have
-                 ;; changed a lot since the latest Scribus release (2018-04).
-                 ;; Thus, we require a bunch of patches to stay compatible.
-                 (search-patches "scribus-poppler.patch")
-                 (list (origin
-                         (method url-fetch)
-                         (uri (string-append
-                               "https://github.com/scribusproject/scribus/commit/"
-                               "7d4ceeb5cac32287769e3c0238699e0b3e56c24d.patch"))
-                         (file-name "scribus-poppler-0.64.patch")
-                         (sha256
-                          (base32
-                           "1kr27bfzkpabrh42nsrrvlqyycdg9isbavpaa5spgmrhidcg02xj")))
-                       (origin
-                         (method url-fetch)
-                         (uri (string-append
-                               "https://github.com/scribusproject/scribus/commit/"
-                               "76561c1a55cd07c268f8f2b2fea888532933700b.patch"))
-                         (file-name "scribus-poppler-config.patch")
-                         (sha256
-                          (base32
-                           "01k18xjj82c3ndzp89dlpfhhdccc8z0acf8b04r592jyr5y9rc19")))
-                       (origin
-                         (method url-fetch)
-                         (uri (string-append
-                               "https://github.com/scribusproject/scribus/commit/"
-                               "8e05d26c19097ac2ad5b4ebbf40a3771ee6faf9c.patch"))
-                         (file-name "scribus-poppler-0.69.patch")
-                         (sha256
-                          (base32
-                           "1avdmsj5l543j0irq18nxgiw99n395jj56ih5dsal59fn0wbqk42")))
-                       (origin
-                         (method url-fetch)
-                         (uri (string-append "https://git.archlinux.org/svntogit/"
-                                             "community.git/plain/trunk/scribus-"
-                                             "poppler-0.70.patch?h=packages/scribus&id="
-                                             "8ef43ee2fceb0753ed5a76bb0a11c84775898ffc"))
-                         (file-name "scribus-poppler-0.70.patch")
-                         (sha256
-                          (base32
-                           "0dw7ix3jaj0y1q97cmmqwb2qgdx760yhxx86wa8rnx0xhfi5x6qr"))))))
-       (modules '((guix build utils)))
-       (snippet
-        '(begin
-           (for-each (lambda (file)
-                       (substitute* file
-                         ;; These are required for compatibility with Poppler 0.71.
-                         (("GBool") "bool") (("gTrue") "true") (("gFalse") "false")
-                         ;; ...and this for Poppler 0.72.
-                         (("getCString") "c_str")))
-                     (find-files "scribus/plugins/import/pdf"))
-           #t))))
+         "0w9zzsiaq3f7vpxybk01c9z2b4qqg67mzpyfb2gjchz8dhdb423r"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f                      ;no test target
@@ -118,9 +65,9 @@
        (modify-phases %standard-phases
          (add-after 'install 'wrap-program
            (lambda* (#:key inputs outputs #:allow-other-keys)
-             ;; Fix "ImportError: No module named _sysconfigdata_nd" where
-             ;; Scribus checks PATH and eventually runs system's Python
-             ;; instead of package's.
+             ;; Fix "ImportError: No module named _sysconfigdata_nd"
+             ;; runtime error where Scribus checks PATH and eventually
+             ;; runs system's Python instead of package's.
              (let* ((out (assoc-ref outputs "out"))
                     (py2 (assoc-ref inputs "python")))
                (wrap-program (string-append out "/bin/scribus")
@@ -161,12 +108,13 @@
     (home-page "https://www.scribus.net")
     (synopsis "Desktop publishing and page layout program")
     (description
-     "Scribus is a @dfn{desktop publishing} (DTP) application and can be used
-for many tasks; from brochure design to newspapers, magazines, newsletters and
-posters to technical documentation.  Scribus supports professional DTP
-features, such as CMYK color and a color management system to soft proof
-images for high quality color printing, flexible PDF creation options,
-Encapsulated PostScript import/export and creation of four color separations,
-import of EPS/PS and SVG as native vector graphics, Unicode text including
-right to left scripts such as Arabic and Hebrew via freetype.")
+     "Scribus is a @dfn{desktop publishing} (DTP) application and can
+be used for many tasks; from brochure design to newspapers, magazines,
+newsletters and posters to technical documentation.  Scribus supports
+professional DTP features, such as CMYK color and a color management
+system to soft proof images for high quality color printing, flexible
+PDF creation options, Encapsulated PostScript import/export and
+creation of four color separations, import of EPS/PS and SVG as native
+vector graphics, Unicode text including right to left scripts such as
+Arabic and Hebrew via FreeType.")
     (license license:gpl2+)))
diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm
index 9b2876c359..d786ad08d9 100644
--- a/gnu/packages/search.scm
+++ b/gnu/packages/search.scm
@@ -49,14 +49,14 @@
 (define-public xapian
   (package
     (name "xapian")
-    (version "1.4.11")
+    (version "1.4.12")
     ;; Note: When updating Xapian, remember to update xapian-bindings below.
     (source (origin
               (method url-fetch)
               (uri (string-append "https://oligarchy.co.uk/xapian/" version
                                   "/xapian-core-" version ".tar.xz"))
               (sha256
-               (base32 "01xwqljnp5afjf9097lyfbqc6x5bcqszfdkn9l1j86imwbrv45lz"))))
+               (base32 "0z5c1y9vp519h2x2igjq39v6j615nppry0wasd0xn4hphgd3d2jg"))))
     (build-system gnu-build-system)
     (inputs `(("zlib" ,zlib)
               ("util-linux" ,util-linux)))
@@ -94,7 +94,7 @@ rich set of boolean query operators.")
                                   "/xapian-bindings-" version ".tar.xz"))
               (sha256
                (base32
-                "13bi2vr5d39ys49nlwmsv64ik5pdwkz28bh08hyylrhanb45d8wx"))))
+                "0j9awiiw9zf97r60m848absq43k37gghpyw7acxqjazfzd71fxvm"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-python3")
diff --git a/gnu/packages/security-token.scm b/gnu/packages/security-token.scm
index 5fb75ce617..3d6ad4f9d7 100644
--- a/gnu/packages/security-token.scm
+++ b/gnu/packages/security-token.scm
@@ -64,7 +64,7 @@
 (define-public ccid
   (package
     (name "ccid")
-    (version "1.4.30")
+    (version "1.4.31")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -72,7 +72,7 @@
                     name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "0z7zafdg75fr1adlv2x0zz34s07gljcjg2lsz76s1048w1xhh5xc"))))
+                "1xz8ikr6vk73w3xnwb931yq8lqc1zrj8c3v34n6h63irwjvdfj3b"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags (list (string-append "--enable-usbdropdir=" %output
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 248bf39eff..cdd0caec4a 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -181,7 +181,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.")
 (define r-with-tests
   (package
     (name "r-with-tests")
-    (version "3.6.0")
+    (version "3.6.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://cran/src/base/R-"
@@ -189,7 +189,7 @@ This package also provides @command{xls2csv} to export Excel files to CSV.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "02bmylmzrm9sdidirmwy233lghmd2346z725ca71ari68lzarz1n"))))
+                "128kifbq0w25y8aq77w289ddax5i5w2djcfsqgffrb3i7syrxajv"))))
     (build-system gnu-build-system)
     (arguments
      `(#:disallowed-references (,tzdata-for-tests)
@@ -1138,13 +1138,13 @@ legends.")
 (define-public r-ggplot2
   (package
     (name "r-ggplot2")
-    (version "3.2.0")
+    (version "3.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "ggplot2" version))
        (sha256
-        (base32 "1cvk9pw59kxx19kamqwa15h26rbznp0vvqpn7y8kgjssnrzqkdii"))))
+        (base32 "0mjswqiqcwm0aqxll16bx2kwa6c9km3aql87bdj4347n1ali94g3"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-digest" ,r-digest)
@@ -2023,14 +2023,14 @@ and environmental data in the framework of Euclidean exploratory methods.")
 (define-public r-xml2
   (package
     (name "r-xml2")
-    (version "1.2.1")
+    (version "1.2.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "xml2" version))
        (sha256
         (base32
-         "0186d7r36xw1z9f8ajz35a0dz4ch6hmrjl9536yc7vq78v4vn5an"))))
+         "1x3q3a0xv8j0nx3hs4d3pfjm5g9nvaxmfrapba9f4nrkqi3z2l1h"))))
     (build-system r-build-system)
     (inputs
      `(("libxml2" ,libxml2)
diff --git a/gnu/packages/syncthing.scm b/gnu/packages/syncthing.scm
index c35ee8639c..0f81b8804a 100644
--- a/gnu/packages/syncthing.scm
+++ b/gnu/packages/syncthing.scm
@@ -30,7 +30,7 @@
 (define-public syncthing
   (package
     (name "syncthing")
-    (version "1.2.0")
+    (version "1.2.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/syncthing/syncthing"
@@ -38,7 +38,7 @@
                                   "/syncthing-source-v" version ".tar.gz"))
               (sha256
                (base32
-                "1l7crhggg2vq4y7pgzsj8wp7k4l9hw5yblflly5bzwywzxz8ff83"))
+                "1b6fidpkwfa2bm6hlv4p0bzxa1ha6s88vajczhryhqi5vjfxafri"))
               (modules '((guix build utils)))
               ;; Delete bundled ("vendored") free software source code.
               (snippet '(begin
@@ -422,7 +422,7 @@ address of the default LAN gateway.")
 (define-public go-github-com-lib-pq
   (package
     (name "go-github-com-lib-pq")
-    (version "1.1.1")
+    (version "1.2.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -431,7 +431,7 @@ address of the default LAN gateway.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0g64wlg1l1ybq4x44idksl4pgm055s58jxc6r6x4qhqm5q76h0km"))))
+                "08j1smm6rassdssdks4yh9aspa1dv1g5nvwimmknspvhx8a7waqz"))))
     (build-system go-build-system)
     (arguments
      `(#:import-path "github.com/lib/pq"
@@ -793,8 +793,8 @@ using sh's word-splitting rules.")
       (license expat))))
 
 (define-public go-github-com-syncthing-notify
-  (let ((commit "4e389ea6c0d84e6195eb585ffaf62c8c143306ae")
-        (revision "4"))
+  (let ((commit "69c7a957d3e261f9744f46b3dd4d608d8480ad90")
+        (revision "5"))
     (package
       (name "go-github-com-syncthing-notify")
       (version (git-version "0.0.0" revision commit))
@@ -806,7 +806,7 @@ using sh's word-splitting rules.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "19gvl14s1l9m82f8c2xsjcr8lmbqrvw1mxkayvfcpimvxfz0j61i"))))
+                  "1mmdzyfnmjabyhbipl4bggw4w5nlxyyjp0d93qd824kj07kmsr1f"))))
       (build-system go-build-system)
       (arguments
        '(#:import-path "github.com/syncthing/notify"))
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index a4dc714eb7..e05a4928f4 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -146,14 +146,14 @@ as well as the classic centralized workflow.")
    (name "git")
    ;; XXX When updating Git, check if the special 'git-source' input to cgit
    ;; needs to be updated as well.
-   (version "2.22.0")
+   (version "2.22.1")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://kernel.org/software/scm/git/git-"
                                 version ".tar.xz"))
             (sha256
              (base32
-              "17zj6jwx3s6bybd290f1mj5iym1r64560rmnf0p63x4akxclp7hm"))))
+              "093qjgagha937w96izkpsjkhxf5drsa7rvk5snlyjivqnwxgkqac"))))
    (build-system gnu-build-system)
    (native-inputs
     `(("native-perl" ,perl)
@@ -166,7 +166,7 @@ as well as the classic centralized workflow.")
                 version ".tar.xz"))
           (sha256
            (base32
-            "0fpfqw0h4g4v478fscic8z714i0ls5w7946vzhmq31lf7nizsb2f"))))
+            "17vpqv9g8li58njx7z5124b3c2zb2n63z4dalh5gw9iys7qb8446"))))
       ;; For subtree documentation.
       ("asciidoc" ,asciidoc)
       ("docbook-xsl" ,docbook-xsl)
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 1ebeb41aff..9b809d007f 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -3524,7 +3524,7 @@ transitions, and effects and then export your film to many common formats.")
 (define-public dav1d
   (package
     (name "dav1d")
-    (version "0.2.2")
+    (version "0.4.0")
     (source
       (origin
         (method url-fetch)
@@ -3536,7 +3536,8 @@ transitions, and effects and then export your film to many common formats.")
                    (string-append "https://code.videolan.org/videolan/dav1d/-/"
                                   "archive/" version "/dav1d-" version ".tar.bz2")))
         (sha256
-         (base32 "1llf4v486avj83d31670vdd5nshbq10qrx9vwrm1j078dh4ax4q0"))))
+         (base32
+          "08yqml01lbcpflrshdpvn88jv3xd8gm559qikiwyrh41a3kb4lr5"))))
     (build-system meson-build-system)
     (native-inputs `(("nasm" ,nasm)))
     (home-page "https://code.videolan.org/videolan/dav1d")
diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index e06edd5be9..1eede0b22a 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -814,7 +814,7 @@ refactor Vim in order to:
 (define-public vifm
   (package
     (name "vifm")
-    (version "0.10")
+    (version "0.10.1")
     (source
       (origin
         (method url-fetch)
@@ -825,35 +825,35 @@ refactor Vim in order to:
                               "vifm-" version ".tar.bz2")))
         (sha256
          (base32
-          "1f380xcyjnm4xmcdazs6dj064bwddhywvn3mgm36k7r7b2gnjnp0"))))
+          "0fyhxh7ndjn8fyjhj14ymkr3pjcs3k1xbs43g7xvvq85vdb6y04r"))))
     (build-system gnu-build-system)
     (arguments
-    '(#:configure-flags '("--disable-build-timestamp")
-      #:phases
-      (modify-phases %standard-phases
-        (add-after 'patch-source-shebangs 'patch-test-shebangs
-          (lambda _
-            (substitute* (cons* "src/background.c"
-                                "src/cfg/config.c"
-                                (find-files "tests" "\\.c$"))
-              (("/bin/sh") (which "sh"))
-              (("/bin/bash") (which "bash")))
-            ;; This test segfaults
-            (substitute* "tests/Makefile"
-              (("misc") ""))
-            #t))
-         (add-after 'install 'install-vim-plugin-files
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (vifm (string-append out "/share/vifm"))
-                    (vimfiles (string-append out "/share/vim/vimfiles")))
-               (copy-recursively (string-append vifm "/colors")
-                                 (string-append vimfiles "/colors"))
-               (copy-recursively (string-append vifm "/vim")
-                                 vimfiles)
-               (delete-file-recursively (string-append vifm "/colors"))
-               (delete-file-recursively (string-append vifm "/vim")))
-             #t)))))
+     '(#:configure-flags '("--disable-build-timestamp")
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'patch-source-shebangs 'patch-test-shebangs
+           (lambda _
+             (substitute* (cons* "src/background.c"
+                                 "src/cfg/config.c"
+                                 (find-files "tests" "\\.c$"))
+               (("/bin/sh") (which "sh"))
+               (("/bin/bash") (which "bash")))
+             ;; This test segfaults
+             (substitute* "tests/Makefile"
+               (("misc") ""))
+             #t))
+          (add-after 'install 'install-vim-plugin-files
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((out (assoc-ref outputs "out"))
+                     (vifm (string-append out "/share/vifm"))
+                     (vimfiles (string-append out "/share/vim/vimfiles")))
+                (copy-recursively (string-append vifm "/colors")
+                                  (string-append vimfiles "/colors"))
+                (copy-recursively (string-append vifm "/vim")
+                                  vimfiles)
+                (delete-file-recursively (string-append vifm "/colors"))
+                (delete-file-recursively (string-append vifm "/vim")))
+              #t)))))
     (native-inputs
      `(("groff" ,groff))) ; for the documentation
     (inputs
diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index d1a7248536..3c6db64ad7 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -239,13 +239,13 @@ the user specifically asks to proxy, so the @dfn{VPN} interface no longer
 (define-public openconnect
   (package
    (name "openconnect")
-   (version "8.03")
+   (version "8.04")
    (source (origin
             (method url-fetch)
             (uri (string-append "ftp://ftp.infradead.org/pub/openconnect/"
                                 "openconnect-" version ".tar.gz"))
-            (sha256 (base32
-                     "1wlypi68kqqg2mdck8wvf6aanhrmf9i7z6lngyxvcrp23jdzz34h"))))
+            (sha256
+             (base32 "07zqcl2ykdc4mgix9sbv4jgpg7cybifxfgrycvf99ckq7xp9r5wq"))))
    (build-system gnu-build-system)
    (propagated-inputs
     `(("libxml2" ,libxml2)