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-rw-r--r--gnu/packages/base.scm70
-rw-r--r--gnu/packages/bash.scm8
-rw-r--r--gnu/packages/bdw-gc.scm12
-rw-r--r--gnu/packages/bison.scm19
-rw-r--r--gnu/packages/boost.scm18
-rw-r--r--gnu/packages/build-tools.scm2
-rw-r--r--gnu/packages/check.scm40
-rw-r--r--gnu/packages/cmake.scm12
-rw-r--r--gnu/packages/compression.scm59
-rw-r--r--gnu/packages/cups.scm24
-rw-r--r--gnu/packages/curl.scm21
-rw-r--r--gnu/packages/databases.scm17
-rw-r--r--gnu/packages/docbook.scm10
-rw-r--r--gnu/packages/documentation.scm15
-rw-r--r--gnu/packages/file.scm5
-rw-r--r--gnu/packages/flex.scm16
-rw-r--r--gnu/packages/fontutils.scm19
-rw-r--r--gnu/packages/fribidi.scm7
-rw-r--r--gnu/packages/gcc.scm22
-rw-r--r--gnu/packages/gdb.scm1
-rw-r--r--gnu/packages/ghostscript.scm16
-rw-r--r--gnu/packages/glib.scm12
-rw-r--r--gnu/packages/gnome.scm28
-rw-r--r--gnu/packages/gnupg.scm41
-rw-r--r--gnu/packages/gtk.scm18
-rw-r--r--gnu/packages/guile.scm33
-rw-r--r--gnu/packages/icu4c.scm14
-rw-r--r--gnu/packages/image.scm20
-rw-r--r--gnu/packages/inkscape.scm21
-rw-r--r--gnu/packages/jemalloc.scm5
-rw-r--r--gnu/packages/kerberos.scm7
-rw-r--r--gnu/packages/libbsd.scm4
-rw-r--r--gnu/packages/libevent.scm13
-rw-r--r--gnu/packages/libffi.scm9
-rw-r--r--gnu/packages/libidn.scm25
-rw-r--r--gnu/packages/libsigsegv.scm33
-rw-r--r--gnu/packages/libunistring.scm29
-rw-r--r--gnu/packages/linux.scm37
-rw-r--r--gnu/packages/m4.scm1
-rw-r--r--gnu/packages/make-bootstrap.scm10
-rw-r--r--gnu/packages/nettle.scm18
-rw-r--r--gnu/packages/openldap.scm4
-rw-r--r--gnu/packages/openstack.scm8
-rw-r--r--gnu/packages/package-management.scm4
-rw-r--r--gnu/packages/patches/binutils-aarch64-symbol-relocation.patch36
-rw-r--r--gnu/packages/patches/doxygen-gcc-ice.patch25
-rw-r--r--gnu/packages/patches/findutils-gnulib-libio.patch114
-rw-r--r--gnu/packages/patches/findutils-makedev.patch22
-rw-r--r--gnu/packages/patches/freetype-CVE-2018-6942.patch31
-rw-r--r--gnu/packages/patches/gcc-libsanitizer-ustat.patch41
-rw-r--r--gnu/packages/patches/gcc-strmov-store-file-names.patch12
-rw-r--r--gnu/packages/patches/gdb-python-3.7.patch52
-rw-r--r--gnu/packages/patches/glibc-2.28-git-fixes.patch248
-rw-r--r--gnu/packages/patches/jemalloc-arm-address-bits.patch39
-rw-r--r--gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch32
-rw-r--r--gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch58
-rw-r--r--gnu/packages/patches/m4-gnulib-libio.patch128
-rw-r--r--gnu/packages/patches/mariadb-gcc-ice.patch24
-rw-r--r--gnu/packages/patches/meson-for-build-rpath.patch6
-rw-r--r--gnu/packages/patches/perf-gcc-ice.patch13
-rw-r--r--gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch36
-rw-r--r--gnu/packages/patches/perl-deterministic-ordering.patch6
-rw-r--r--gnu/packages/patches/perl-file-path-CVE-2017-6512.patch173
-rw-r--r--gnu/packages/patches/texinfo-perl-compat.patch51
-rw-r--r--gnu/packages/pcre.scm21
-rw-r--r--gnu/packages/pdf.scm4
-rw-r--r--gnu/packages/perl.scm42
-rw-r--r--gnu/packages/python-crypto.scm4
-rw-r--r--gnu/packages/python-web.scm4
-rw-r--r--gnu/packages/python.scm448
-rw-r--r--gnu/packages/readline.scm4
-rw-r--r--gnu/packages/ssh.scm21
-rw-r--r--gnu/packages/tcl.scm16
-rw-r--r--gnu/packages/tex.scm126
-rw-r--r--gnu/packages/texinfo.scm1
-rw-r--r--gnu/packages/time.scm8
-rw-r--r--gnu/packages/tls.scm14
-rw-r--r--gnu/packages/web.scm8
-rw-r--r--gnu/packages/xml.scm20
79 files changed, 1425 insertions, 1270 deletions
diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 4065af0abc..3a1186673e 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -102,6 +102,15 @@ command-line arguments, multiple languages, and so on.")
(arguments
`(#:phases
(modify-phases %standard-phases
+ (add-before 'check 'disable-failing-tests
+ (lambda _
+ ;; These tests are expected to fail due to a glibc bug which has
+ ;; been fixed in 2.28, so they are unexpectedly passing. They
+ ;; should be fixed for grep versions > 3.1.
+ (substitute* "tests/Makefile.in"
+ (("^[[:blank:]]+backref-alt[[:blank:]]+\\\\") "\\")
+ (("^[[:blank:]]+triple-backref[[:blank:]]+\\\\") "\\"))
+ #t))
(add-after 'install 'fix-egrep-and-fgrep
;; Patch 'egrep' and 'fgrep' to execute 'grep' via its
;; absolute file name instead of searching for it in $PATH.
@@ -289,7 +298,9 @@ interactive means to merge two files.")
(base32
"178nn4dl7wbcw499czikirnkniwnx36argdnqgz4ik9i6zvwkm6y"))
(patches (search-patches
+ "findutils-gnulib-libio.patch"
"findutils-localstatedir.patch"
+ "findutils-makedev.patch"
"findutils-test-xargs.patch"))
(modules '((guix build utils)))
(snippet
@@ -326,14 +337,14 @@ used to apply commands with arbitrarily long arguments.")
(define-public coreutils
(package
(name "coreutils")
- (version "8.29")
+ (version "8.30")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/coreutils/coreutils-"
version ".tar.xz"))
(sha256
(base32
- "0plm1zs9il6bb5mk881qvbghq4glc8ybbgakk2lfzb0w64fgml4j"))))
+ "0mxhw43d4wpqmvg0l4znk1vm10fy92biyh90lzdnqjcic2lb6cg8"))))
(build-system gnu-build-system)
(inputs `(("acl" ,acl) ; TODO: add SELinux
("gmp" ,gmp) ;bignums in 'expr', yay!
@@ -364,7 +375,17 @@ used to apply commands with arbitrarily long arguments.")
(substitute* (find-files "gnulib-tests" "\\.c$")
(("/bin/sh") (which "sh")))
(substitute* (find-files "tests" "\\.sh$")
- (("#!/bin/sh") (which "sh")))
+ (("#!/bin/sh") (string-append "#!" (which "sh"))))
+ #t))
+ (add-before 'check 'disable-broken-test
+ (lambda _
+ ;; This test hits the 127 character shebang limit in the build
+ ;; environment due to the way "env -S" splits arguments into
+ ;; shebangs. Note that "env-S-script.sh" works around this
+ ;; specific issue, but "env-S.pl" is not adjusted for build
+ ;; environments with long prefixes (/tmp/guix-build-...).
+ (substitute* "Makefile"
+ (("^.*tests/misc/env-S.pl.*$") ""))
#t)))
;; Work around a cross-compilation bug whereby libcoreutils.a would
@@ -435,14 +456,14 @@ change. GNU make offers many powerful extensions over the standard utility.")
(define-public binutils
(package
(name "binutils")
- (version "2.30")
+ (version "2.31.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/binutils/binutils-"
version ".tar.bz2"))
(sha256
(base32
- "028cklfqaab24glva1ks2aqa1zxa6w6xmc8q34zs1sb7h22dxspg"))
+ "1l34hn1zkmhr1wcrgf0d4z7r3najxnw3cx2y2fk7v55zjlk3ik7z"))
(patches (search-patches "binutils-loongson-workaround.patch"))))
(build-system gnu-build-system)
@@ -480,17 +501,6 @@ included.")
(license gpl3+)
(home-page "https://www.gnu.org/software/binutils/")))
-(define-public binutils/fixed
- ;; TODO: Incorporate this in binutils during the next rebuild cycle.
- (hidden-package
- (package
- (inherit binutils)
- (source (origin
- (inherit (package-source binutils))
- (patches (append (origin-patches (package-source binutils))
- (search-patches
- "binutils-aarch64-symbol-relocation.patch"))))))))
-
(define* (make-ld-wrapper name #:key
(target (const #f))
binutils
@@ -572,13 +582,13 @@ store.")
(name "glibc")
;; Note: Always use a dot after the minor version since various places rely
;; on "version-major+minor" to determine where locales are found.
- (version "2.27")
+ (version "2.28")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/glibc/glibc-" version ".tar.xz"))
(sha256
(base32
- "0wpwq7gsm7sd6ysidv0z575ckqdg13cr2njyfgrbgh4f65adwwji"))
+ "10iha5ynvdj5m62vgpgqbq4cwvc2yhyl2w9yyyjgfxmdmx8h145i"))
(snippet
;; Disable 'ldconfig' and /etc/ld.so.cache. The latter is
;; required on LFS distros to avoid loading the distro's libc.so
@@ -590,7 +600,7 @@ store.")
#t))
(modules '((guix build utils)))
(patches (search-patches "glibc-ldd-x86_64.patch"
- "glibc-2.27-git-fixes.patch"
+ "glibc-2.28-git-fixes.patch"
"glibc-hidden-visibility-ldconfig.patch"
"glibc-versioned-locpath.patch"
"glibc-allow-kernel-2.6.32.patch"
@@ -873,25 +883,25 @@ GLIBC/HURD for a Hurd host"
(define-syntax glibc
(identifier-syntax (glibc-for-target)))
-;; The "next" libc. Useful for populating locale data before reconfiguring the
-;; entire system on it. Will be the default in the next rebuild cycle.
-(define-public glibc-2.28
+;; Below are old libc versions, which we use mostly to build locale data in
+;; the old format (which the new libc cannot cope with.)
+
+(define-public glibc-2.27
(package
(inherit glibc)
- (version "2.28")
+ (version "2.27")
(source (origin
(inherit (package-source glibc))
(uri (string-append "mirror://gnu/glibc/glibc-" version ".tar.xz"))
(sha256
(base32
- "10iha5ynvdj5m62vgpgqbq4cwvc2yhyl2w9yyyjgfxmdmx8h145i"))
- (patches (search-patches "glibc-allow-kernel-2.6.32.patch"
- "glibc-ldd-x86_64.patch"
+ "0wpwq7gsm7sd6ysidv0z575ckqdg13cr2njyfgrbgh4f65adwwji"))
+ (patches (search-patches "glibc-ldd-x86_64.patch"
+ "glibc-2.27-git-fixes.patch"
"glibc-hidden-visibility-ldconfig.patch"
- "glibc-versioned-locpath.patch"))))))
-
-;; Below are old libc versions, which we use mostly to build locale data in
-;; the old format (which the new libc cannot cope with.)
+ "glibc-versioned-locpath.patch"
+ "glibc-allow-kernel-2.6.32.patch"
+ "glibc-reinstate-prlimit64-fallback.patch"))))))
(define-public glibc-2.26
(package
diff --git a/gnu/packages/bash.scm b/gnu/packages/bash.scm
index 64f7782f58..46cb13048d 100644
--- a/gnu/packages/bash.scm
+++ b/gnu/packages/bash.scm
@@ -2,7 +2,7 @@
;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014, 2015, 2018 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2015, 2017 Leo Famulari <leo@famulari.name>
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
@@ -79,7 +79,11 @@
(16 "1cgi1y6mifm8hsgv4avj5ih76535js3qba1sqwbfvp7si76927sh")
(17 "0w6jpj2giakji1ir83rpkx1y7n7xqppah3j748m6dm38hywr0gvp")
(18 "1k58h4wxbsg7r4rwhrvzx5hfbapba2nxjysbhh6qp6ki5ys99i2v")
- (19 "07n1i5610lbs672x1s8g82qn3qfj06s0ip3z80sri0g8vxp0s5r7")))
+ (19 "07n1i5610lbs672x1s8g82qn3qfj06s0ip3z80sri0g8vxp0s5r7")
+ (20 "0b2jk5n1af1vh590qfc52hv65mafb4vl1xv26s8j5a3byb5y4h0q")
+ (21 "1hblcd2xmqqlp0idnavw66570n7m0yv5rbbr873c2gkn982mk3xx")
+ (22 "0yfbjzr79vzjs2hyi5m8iy2b38fq7vikdfa4zqdvjsp36q4iycs5")
+ (23 "1dlism6qdx60nvzj0v7ndr7lfahl4a8zmzckp13hqgdx7xpj7v2g")))
(define (download-patches store count)
"Download COUNT Bash patches into store. Return a list of
diff --git a/gnu/packages/bdw-gc.scm b/gnu/packages/bdw-gc.scm
index eba30217da..c7491f845f 100644
--- a/gnu/packages/bdw-gc.scm
+++ b/gnu/packages/bdw-gc.scm
@@ -30,14 +30,14 @@
(define-public libgc
(package
(name "libgc")
- (version "7.6.4")
+ (version "7.6.6")
(source (origin
(method url-fetch)
- (uri (string-append "http://www.hboehm.info/gc/gc_source/gc-"
- version ".tar.gz"))
+ (uri (string-append "https://github.com/ivmai/bdwgc/releases"
+ "/download/v" version "/gc-" version ".tar.gz"))
(sha256
(base32
- "076dzsqqyxd3nlzs0z277vvhqjp8nv5dqi763s0m90zr6ljiyk5r"))))
+ "1p1r015a7jbpvkkbgzv1y8nxrbbp6dg0mq3ksi6ji0qdz3wfss79"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@@ -91,7 +91,7 @@ C or C++ programs, though that is not its primary goal.")
(define-public libatomic-ops
(package
(name "libatomic-ops")
- (version "7.6.4")
+ (version "7.6.6")
(source (origin
(method url-fetch)
(uri (string-append
@@ -99,7 +99,7 @@ C or C++ programs, though that is not its primary goal.")
version "/libatomic_ops-" version ".tar.gz"))
(sha256
(base32
- "0knxncsjhbknlyy6lx7ycxhpzfk3sykhvicgxyp0rmsxd1d3v0jv"))))
+ "0x7071z707msvyrv9dmgahd1sghbkw8fpbagvcag6xs8yp2spzlr"))))
(build-system gnu-build-system)
(outputs '("out" "debug"))
(synopsis "Accessing hardware atomic memory update operations")
diff --git a/gnu/packages/bison.scm b/gnu/packages/bison.scm
index 09c6481a16..71de47762d 100644
--- a/gnu/packages/bison.scm
+++ b/gnu/packages/bison.scm
@@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2012, 2013, 2015 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -29,7 +30,7 @@
(define-public bison
(package
(name "bison")
- (version "3.0.4")
+ (version "3.0.5")
(source
(origin
(method url-fetch)
@@ -37,10 +38,10 @@
version ".tar.xz"))
(sha256
(base32
- "1qbgf6q1n2z17k8g33444m0q68kf3fbiq65q7jlrzpvvj73jh957"))))
+ "0f7kjygrckkx8vas2nm673592jif0a9mw5g8207f6hj6h4pfyp07"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl)
- ;; m4 is not present in PATH when cross-building
+ ;; m4 is not present in PATH when cross-building.
("m4" ,m4)))
(inputs `(("flex" ,flex)))
(propagated-inputs `(("m4" ,m4)))
@@ -52,15 +53,3 @@ deterministic or generalized LR parser from an annotated, context-free
grammar. It is versatile enough to have many applications, from parsers for
simple tools through complex programming languages.")
(license gpl3+)))
-
-(define-public bison-2.7
- (package (inherit bison)
- (version "2.7")
- (source
- (origin
- (method url-fetch)
- (uri (string-append "mirror://gnu/bison/bison-"
- version ".tar.xz"))
- (sha256
- (base32
- "1zd77ilmpv5mi3kr55jrj6ncqlcnyhpianhrwzak2q28cv2cbn23"))))))
diff --git a/gnu/packages/boost.scm b/gnu/packages/boost.scm
index cf70a29775..d1b359b2cb 100644
--- a/gnu/packages/boost.scm
+++ b/gnu/packages/boost.scm
@@ -43,7 +43,7 @@
(define-public boost
(package
(name "boost")
- (version "1.66.0")
+ (version "1.68.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -52,7 +52,7 @@
".tar.bz2"))
(sha256
(base32
- "1aaw48cmimsskzgiclwn0iifp62a5iw9cbqrhfari876af1828ap"))
+ "1dyqsr9yb01y0nnjdq9b8q5s2kvhxbayk34832k5cpzn7jy30qbz"))
(patches (search-patches "boost-fix-icu-build.patch"))))
(build-system gnu-build-system)
(inputs `(("icu4c" ,icu4c)
@@ -78,7 +78,6 @@
(out (assoc-ref outputs "out")))
(substitute* '("libs/config/configure"
"libs/spirit/classic/phoenix/test/runtest.sh"
- "tools/build/doc/bjam.qbk"
"tools/build/src/engine/execunix.c"
"tools/build/src/engine/Jambase"
"tools/build/src/engine/jambase.c")
@@ -100,7 +99,18 @@
make-flags)))
(replace 'install
(lambda* (#:key make-flags #:allow-other-keys)
- (apply invoke "./b2" "install" make-flags))))))
+ (apply invoke "./b2" "install" make-flags)))
+ (add-after 'install 'provide-libboost_python
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ ;; Boost can build support for both Python 2 and Python 3 since
+ ;; version 1.67.0, and suffixes each library with the Python
+ ;; version. Many consumers only check for libboost_python
+ ;; however, so we provide it here as suggested in
+ ;; <https://github.com/boostorg/python/issues/203>.
+ (with-directory-excursion (string-append out "/lib")
+ (symlink "libboost_python27.so" "libboost_python.so"))
+ #t))))))
(home-page "https://www.boost.org")
(synopsis "Peer-reviewed portable C++ source libraries")
diff --git a/gnu/packages/build-tools.scm b/gnu/packages/build-tools.scm
index 4fc2d5acf7..1c9b41ef5b 100644
--- a/gnu/packages/build-tools.scm
+++ b/gnu/packages/build-tools.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Corentin Bocquillon <corentin@nybble.fr>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 17a69bcd1c..ddd532528f 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -619,14 +619,14 @@ standard library.")
(define-public python-pytest
(package
(name "python-pytest")
- (version "3.5.0")
+ (version "3.7.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pytest" version))
(sha256
(base32
- "1q832zd07zak2lyxbycxjydh0jp7y3hvawjqzlvra6aghz8r3r7s"))))
+ "00jv750alrj62r586hcmvpqlmkqszqfm1x7n6qnqacjmmlis2n9l"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -642,9 +642,11 @@ standard library.")
(string-append "@pytest.mark.skip"
"(reason=\"Assumes that /usr exists.\")\n "
line)))
- #t)))))
+ #t))
+ (replace 'check (lambda _ (invoke "pytest" "-vv"))))))
(propagated-inputs
- `(("python-attrs" ,python-attrs-bootstrap)
+ `(("python-atomicwrites" ,python-atomicwrites)
+ ("python-attrs" ,python-attrs-bootstrap)
("python-more-itertools" ,python-more-itertools)
("python-pluggy" ,python-pluggy)
("python-py" ,python-py)
@@ -655,6 +657,7 @@ standard library.")
("python-hypothesis" ,python-hypothesis)
("python-nose" ,python-nose)
("python-mock" ,python-mock)
+ ("python-pytest" ,python-pytest-bootstrap)
("python-setuptools-scm" ,python-setuptools-scm)))
(home-page "http://pytest.org")
(synopsis "Python testing library")
@@ -672,6 +675,7 @@ and many external plugins.")
(inherit pytest)
(propagated-inputs
`(("python2-funcsigs" ,python2-funcsigs)
+ ("python2-pathlib2" ,python2-pathlib2)
,@(package-propagated-inputs pytest))))))
(define-public python-pytest-bootstrap
@@ -688,19 +692,20 @@ and many external plugins.")
(package (inherit pytest)
(propagated-inputs
`(("python2-funcsigs" ,python2-funcsigs-bootstrap)
+ ("python2-pathlib2" ,python2-pathlib2-bootstrap)
,@(package-propagated-inputs pytest))))))
(define-public python-pytest-cov
(package
(name "python-pytest-cov")
- (version "2.4.0")
+ (version "2.5.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pytest-cov" version))
(sha256
(base32
- "03c2qc42r4bczyw93gd7n0qi1h1jfhw7fnbhi33c3vp1hs81gm2k"))))
+ "0bbfpwdh9k3636bxc88vz9fa7vf4akchgn513ql1vd0xy4n7bah3"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -729,26 +734,15 @@ supports coverage of subprocesses.")
(define-public python-pytest-runner
(package
(name "python-pytest-runner")
- (version "2.11.1")
+ (version "4.2")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pytest-runner" version))
(sha256
(base32
- "1cw978kqqcq916b9gfns1qjqvg33c5ail5jhw9054dsynkm32flq"))))
+ "1gkpyphawxz38ni1gdq1fmwyqcg02m7ypzqvv46z06crwdxi2gyj"))))
(build-system python-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- ;; The fancy way of setting the version with setuptools_scm does not
- ;; seem to work here.
- (add-after 'unpack 'set-version
- (lambda _
- (substitute* "docs/conf.py"
- (("version = setuptools_scm\\.get_version\\(root='\\.\\.')")
- (string-append "version = \"" ,version "\"")))
- #t)))))
(native-inputs
`(("python-pytest" ,python-pytest-bootstrap)
("python-setuptools-scm" ,python-setuptools-scm)))
@@ -765,14 +759,14 @@ supports coverage of subprocesses.")
(define-public python-pytest-mock
(package
(name "python-pytest-mock")
- (version "1.6.3")
+ (version "1.10.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pytest-mock" version))
(sha256
(base32
- "075v7b2wm5f839r1a30n21wfk5rfqp3d05q7zb9jlb2wmxki23cj"))))
+ "1h6lgpmsvs9s8j2s80v06f9f3iaw1n1rc51mbrxk1f12sw4q56nq"))))
(build-system python-build-system)
(native-inputs
`(("python-setuptools-scm" ,python-setuptools-scm)))
@@ -1421,13 +1415,13 @@ normally the case.")
(define-public python-hypothesis
(package
(name "python-hypothesis")
- (version "3.52.0")
+ (version "3.68.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "hypothesis" version))
(sha256
(base32
- "0g54cypfi5qj6cgxfr7l1nb41r1cqhhngx4qxn4ga9h720rcsbr8"))))
+ "15wlbdy148h3z0ckylf7zkszrfnnk254a6ld3qaf37lkf7hyp4r0"))))
(build-system python-build-system)
(native-inputs
`(("python-flake8" ,python-flake8)
diff --git a/gnu/packages/cmake.scm b/gnu/packages/cmake.scm
index 06b1cab82c..03bce8b68d 100644
--- a/gnu/packages/cmake.scm
+++ b/gnu/packages/cmake.scm
@@ -7,6 +7,7 @@
;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017, 2018 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -43,7 +44,7 @@
(define-public cmake
(package
(name "cmake")
- (version "3.11.0")
+ (version "3.12.1")
(source (origin
(method url-fetch)
(uri (string-append "https://www.cmake.org/files/v"
@@ -51,7 +52,7 @@
"/cmake-" version ".tar.gz"))
(sha256
(base32
- "0sv5k9q6braa8hhw0y3w19avqn0xn5czv5jf5fz5blnlf7ivw4y3"))
+ "1ckswlaid3p2is1a80fmr4hgwpfsiif66giyx1z9ayhxx0n5qgf5"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -86,6 +87,13 @@
" --exclude-regex ^\\(" (string-join skipped-tests "\\|") "\\)$")))
#:phases
(modify-phases %standard-phases
+ (add-after 'unpack 'split-package
+ ;; Remove files that have been packaged in other package recipes.
+ (lambda _
+ (delete-file "Auxiliary/cmake-mode.el")
+ (substitute* "Auxiliary/CMakeLists.txt"
+ ((".*cmake-mode.el.*") ""))
+ #t))
(add-before 'configure 'patch-bin-sh
(lambda _
;; Replace "/bin/sh" by the right path in... a lot of
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index 8104b9d55c..ac8c1fdbc0 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -85,6 +85,7 @@
(base32
"18dighcs333gsvajvvgqp8l4cx7h1x7yx9gd5xacnk80spyykrf3"))))
(build-system gnu-build-system)
+ (outputs '("out" "static"))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -99,7 +100,15 @@
`((setenv "CHOST" ,(%current-target-system)))
'())
(invoke "./configure"
- (string-append "--prefix=" out))))))))
+ (string-append "--prefix=" out)))))
+ (add-after 'install 'move-static-library
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (static (assoc-ref outputs "static")))
+ (with-directory-excursion (string-append out "/lib")
+ (install-file "libz.a" (string-append static "/lib"))
+ (delete-file "libz.a")
+ #t)))))))
(home-page "https://zlib.net/")
(synopsis "Compression library")
(description
@@ -216,6 +225,21 @@ adding and extracting files to/from a tar archive.")
'(#:tests? #f
#:phases
(modify-phases %standard-phases
+ (add-after 'unpack 'patch-for-glibc-2.28
+ (lambda _
+ ;; Adjust the bundled gnulib to work with glibc 2.28. See e.g.
+ ;; "m4-gnulib-libio.patch". This is a phase rather than patch
+ ;; or snippet to work around <https://bugs.gnu.org/32347>.
+ (substitute* (find-files "lib" "\\.c$")
+ (("#if defined _IO_ftrylockfile")
+ "#if defined _IO_EOF_SEEN"))
+ (substitute* "lib/stdio-impl.h"
+ (("^/\\* BSD stdio derived implementations")
+ (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n"
+ "# define _IO_IN_BACKUP 0x100\n"
+ "#endif\n\n"
+ "/* BSD stdio derived implementations")))
+ #t))
(add-after 'unpack 'use-absolute-name-of-gzip
(lambda* (#:key outputs #:allow-other-keys)
(substitute* "gunzip.in"
@@ -248,6 +272,7 @@ file; as a result, it is often used in conjunction with \"tar\", resulting in
(arguments
`(#:modules ((guix build gnu-build-system)
(guix build utils)
+ (ice-9 ftw)
(srfi srfi-1))
#:phases
(modify-phases %standard-phases
@@ -276,25 +301,32 @@ file; as a result, it is often used in conjunction with \"tar\", resulting in
;; it create all the (un)versioned symlinks, so we handle it here.
(let* ((out (assoc-ref outputs "out"))
(libdir (string-append out "/lib"))
- ;; Find the actual library (e.g. "libbz2.so.1.0.6").
- (lib (string-drop
- (car (find-files
- "."
- (lambda (file stat)
- (and (string-prefix? "./libbz2.so" file)
- (eq? 'regular (stat:type stat))))))
- 2))
- (soversion (string-drop lib (string-length "libbz2.so."))))
+ (soname "libbz2.so")
+ ;; Locate the built library (e.g. "libbz2.so.1.0.6").
+ (lib (car (scandir "."
+ (lambda (file)
+ (and (string-prefix? soname file)
+ (eq? 'regular
+ (stat:type (lstat file))))))))
+ (soversion (string-drop lib (+ 1 (string-length soname)))))
(install-file lib libdir)
(with-directory-excursion libdir
;; Create symlinks libbz2.so.1 -> libbz2.so.1.0, etc.
- (let loop ((base "libbz2.so")
+ (let loop ((base soname)
(numbers (string-split soversion #\.)))
(unless (null? numbers)
(let ((so-file (string-append base "." (car numbers))))
(symlink so-file base)
(loop so-file (cdr numbers))))))
#t)))
+ (add-after 'install-shared-lib 'move-static-lib
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (static (assoc-ref outputs "static")))
+ (with-directory-excursion (string-append out "/lib")
+ (install-file "libbz2.a" (string-append static "/lib"))
+ (delete-file "libbz2.a")
+ #t))))
(add-after 'install-shared-lib 'patch-scripts
(lambda* (#:key outputs inputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out")))
@@ -309,6 +341,7 @@ file; as a result, it is often used in conjunction with \"tar\", resulting in
,@(if (%current-target-system)
'(#:tests? #f)
'())))
+ (outputs '("out" "static"))
(synopsis "High-quality data compression program")
(description
"bzip2 is a freely available, patent free (see below), high-quality data
@@ -376,7 +409,7 @@ compressed with pbzip2 can be decompressed with bzip2).")
(define-public xz
(package
(name "xz")
- (version "5.2.3")
+ (version "5.2.4")
(source (origin
(method url-fetch)
(uri (list (string-append "http://tukaani.org/xz/xz-" version
@@ -385,7 +418,7 @@ compressed with pbzip2 can be decompressed with bzip2).")
version ".tar.gz")))
(sha256
(base32
- "1jr8pxnz55ifc8cvp3ivgl79ph9iik5aypsc9cma228aglsqp4ki"))))
+ "0ibi2zsfaz6l756spjwc5rayf4ckgc9hwmy8qinppcyk4svz64mm"))))
(build-system gnu-build-system)
(synopsis "General-purpose data compression")
(description
diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm
index 3150c25019..b4034dfad8 100644
--- a/gnu/packages/cups.scm
+++ b/gnu/packages/cups.scm
@@ -53,7 +53,7 @@
(define-public cups-filters
(package
(name "cups-filters")
- (version "1.20.1")
+ (version "1.21.0")
(source(origin
(method url-fetch)
(uri
@@ -61,7 +61,7 @@
"cups-filters-" version ".tar.xz"))
(sha256
(base32
- "0qix1whz5n4ijnl6d44f1v8nzkpv99wqjyrby8vx6xnpskw5hsxk"))
+ "0fs90xx9i4h8gbpligf5kkh21llv4kf5g3bgfbx4z272xkm7bsfi"))
(modules '((guix build utils)))
(snippet
;; install backends, banners and filters to cups-filters output
@@ -176,8 +176,7 @@ filters for the PDF-centric printing workflow introduced by OpenPrinting.")
(define-public cups-minimal
(package
(name "cups-minimal")
- (replacement cups-minimal-2.2.8)
- (version "2.2.6")
+ (version "2.2.8")
(source
(origin
(method url-fetch)
@@ -185,7 +184,7 @@ filters for the PDF-centric printing workflow introduced by OpenPrinting.")
version "/cups-" version "-source.tar.gz"))
(sha256
(base32
- "16qn41b84xz6khrr2pa2wdwlqxr29rrrkjfi618gbgdkq9w5ff20"))))
+ "1r7r7b3nqpzc1a9dczqpj2mr8rkcwf01676v11sp4j7w4qfzqs1r"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
@@ -237,21 +236,8 @@ describe printer capabilities and features, and a wide variety of generic and
device-specific programs to convert and print many types of files.")
(license license:gpl2)))
-(define-public cups-minimal-2.2.8
- (package
- (inherit cups-minimal)
- (version "2.2.8")
- (source
- (origin
- (method url-fetch)
- (uri (string-append "https://github.com/apple/cups/releases/download/v"
- version "/cups-" version "-source.tar.gz"))
- (sha256
- (base32
- "1r7r7b3nqpzc1a9dczqpj2mr8rkcwf01676v11sp4j7w4qfzqs1r"))))))
-
(define-public cups
- (package/inherit cups-minimal
+ (package (inherit cups-minimal)
(name "cups")
(arguments
`(;; Three tests fail:
diff --git a/gnu/packages/curl.scm b/gnu/packages/curl.scm
index 1907d2dc3d..a0fbd7738a 100644
--- a/gnu/packages/curl.scm
+++ b/gnu/packages/curl.scm
@@ -50,15 +50,14 @@
(define-public curl
(package
(name "curl")
- (version "7.59.0")
- (replacement curl-7.61.0)
+ (version "7.61.0")
(source (origin
(method url-fetch)
(uri (string-append "https://curl.haxx.se/download/curl-"
version ".tar.xz"))
(sha256
(base32
- "1z310hrjm2vmbcpkyp81dcmj9rk127zkjyawpy2pah0nz6yslkp4"))))
+ "080p9r2kln8cbfj0rqfn6wqp5kdn9k5wp720nirkcw845lcmavpg"))))
(build-system gnu-build-system)
(outputs '("out"
"doc")) ;1.2 MiB of man3 pages
@@ -85,7 +84,8 @@
(separator #f) ;single entry
(files '("etc/ssl/certs/ca-certificates.crt")))))
(arguments
- `(#:configure-flags '("--with-gnutls" "--with-gssapi")
+ `(#:configure-flags '("--with-gnutls" "--with-gssapi"
+ "--disable-static")
;; Add a phase to patch '/bin/sh' occurances in tests/runtests.pl
#:phases
(modify-phases %standard-phases
@@ -141,19 +141,6 @@ tunneling, and so on.")
"See COPYING in the distribution."))
(home-page "https://curl.haxx.se/")))
-(define-public curl-7.61.0
- (package
- (inherit curl)
- (version "7.61.0")
- (source
- (origin
- (method url-fetch)
- (uri (string-append "https://curl.haxx.se/download/curl-"
- version ".tar.xz"))
- (sha256
- (base32
- "080p9r2kln8cbfj0rqfn6wqp5kdn9k5wp720nirkcw845lcmavpg"))))))
-
(define-public kurly
(package
(name "kurly")
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index dc8e52036c..c652f39b12 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -164,14 +164,14 @@ either single machines or networked clusters.")
(define-public gdbm
(package
(name "gdbm")
- (version "1.14.1")
+ (version "1.18")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/gdbm/gdbm-"
version ".tar.gz"))
(sha256
(base32
- "0pxwz3jlwvglq2mrbxvrjgr8pa0aj73p3v9sxmdlj570zw0gzknd"))))
+ "1kimnv12bzjjhaqk4c8w2j6chdj9c6bg21lchaf7abcyfss2r0mq"))))
(arguments `(#:configure-flags '("--enable-libgdbm-compat")))
(build-system gnu-build-system)
(home-page "http://www.gnu.org.ua/software/gdbm")
@@ -630,8 +630,7 @@ Language.")
(sha256
(base32
"0k9walaglwmwdwmkq48ir17g98n83vliyyg5wck22rjgxn2xk4cy"))
- (patches (search-patches "mariadb-gcc-ice.patch"
- "mariadb-client-test-32bit.patch"))
+ (patches (search-patches "mariadb-client-test-32bit.patch"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1169,7 +1168,7 @@ changes.")
(define-public sqlite
(package
(name "sqlite")
- (version "3.23.0")
+ (version "3.24.0")
(source (origin
(method url-fetch)
(uri (let ((numeric-version
@@ -1185,7 +1184,7 @@ changes.")
numeric-version ".tar.gz")))
(sha256
(base32
- "0jbf78g3cm5wq77k7sfg8fb6rz44hnp9hs7p5d66fwd000c1lwdp"))))
+ "0jmprv2vpggzhy7ma4ynmv1jzn3pfiwzkld0kkg6hvgvqs44xlfr"))))
(build-system gnu-build-system)
(inputs `(("readline" ,readline)))
(arguments
@@ -2289,7 +2288,7 @@ Database API 2.0T.")
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
- (version "1.0.12")
+ (version "1.2.11")
(source
(origin
(method url-fetch)
@@ -2297,7 +2296,7 @@ Database API 2.0T.")
"SQLAlchemy/SQLAlchemy-" version ".tar.gz"))
(sha256
(base32
- "1l8qclhd0s90w3pvwhi5mjxdwr5j7gw7cjka2fx6f2vqmq7f4yb6"))))
+ "094mmbs4igrxplfyqd59j90jb83ixpbbzqc0w49yw81m82nnjrgg"))))
(build-system python-build-system)
(native-inputs
`(("python-cython" ,python-cython) ;for c extensions
@@ -2307,7 +2306,7 @@ Database API 2.0T.")
`(#:phases
(modify-phases %standard-phases
(replace 'check
- (lambda _ (zero? (system* "py.test")))))))
+ (lambda _ (invoke "py.test"))))))
(home-page "http://www.sqlalchemy.org")
(synopsis "Database abstraction library")
(description
diff --git a/gnu/packages/docbook.scm b/gnu/packages/docbook.scm
index 1c00e56d6d..1e5379b020 100644
--- a/gnu/packages/docbook.scm
+++ b/gnu/packages/docbook.scm
@@ -138,11 +138,15 @@ by no means limited to these applications.) This package provides XML DTDs.")
(method url-fetch)
(uri (string-append "mirror://sourceforge/docbook/docbook-xsl/"
version "/docbook-xsl-" version ".tar.bz2"))
- ;; Note: If removing all patches, the XZ dependency is no longer needed.
(patches (search-patches "docbook-xsl-nonrecursive-string-subst.patch"))
(sha256
(base32
- "0s59lihif2fr7rznckxr2kfyrvkirv76r1zvidp9b5mj28p4apvj"))))
+ "0s59lihif2fr7rznckxr2kfyrvkirv76r1zvidp9b5mj28p4apvj"))
+ (modules '((guix build utils)))
+ (snippet
+ '(begin
+ (for-each delete-file (find-files "." "\\.jar$"))
+ #t))))
(build-system trivial-build-system)
(arguments
`(#:builder (let ((name-version (string-append ,name "-" ,version)))
@@ -168,7 +172,7 @@ by no means limited to these applications.) This package provides XML DTDs.")
#t))
#:modules ((guix build utils))))
(native-inputs `(("bzip2" ,bzip2)
- ("xz" ,xz)
+ ("xz" ,xz) ;needed for repacked tarballs
("tar" ,tar)))
(home-page "http://docbook.org")
(synopsis "DocBook XSL style sheets for document authoring")
diff --git a/gnu/packages/documentation.scm b/gnu/packages/documentation.scm
index f533535f03..9425df707c 100644
--- a/gnu/packages/documentation.scm
+++ b/gnu/packages/documentation.scm
@@ -139,23 +139,10 @@ markup) can be customized and extended by the user.")
("libxml2" ,libxml2) ; provides xmllint for the tests
("python" ,python-2))) ; for creating the documentation
(inputs
- `(("bash" ,bash-minimal)
- ,@(if (string-prefix? "armhf-" (%current-system))
- `(("gcc-ice-patch" ,@(search-patches "doxygen-gcc-ice.patch")))
- '())))
+ `(("bash" ,bash-minimal)))
(arguments
`(#:test-target "tests"
#:phases (modify-phases %standard-phases
- ;; Work around an ICE that shows up on native compiles for
- ;; armhf-linux.
- ,@(if (string-prefix? "armhf-" (%current-system))
- `((add-after 'unpack 'apply-gcc-patch
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((patch (assoc-ref inputs "gcc-ice-patch")))
- (invoke "patch" "-p1" "--force"
- "--input" patch)))))
- '())
-
(add-before 'configure 'patch-sh
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "src/portable.cpp"
diff --git a/gnu/packages/file.scm b/gnu/packages/file.scm
index 0473c519d5..78f0360c2e 100644
--- a/gnu/packages/file.scm
+++ b/gnu/packages/file.scm
@@ -2,6 +2,7 @@
;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -28,14 +29,14 @@
(define-public file
(package
(name "file")
- (version "5.32")
+ (version "5.33")
(source (origin
(method url-fetch)
(uri (string-append "ftp://ftp.astron.com/pub/file/file-"
version ".tar.gz"))
(sha256
(base32
- "0l1bfa0icng9vdwya00ff48fhvjazi5610ylbhl35qi13d6xqfc6"))))
+ "1iipnwjkag7q04zjkaqic41r9nlw0ml6mhqian6qkkbisb1whlhw"))))
(build-system gnu-build-system)
;; When cross-compiling, this package depends upon a native install of
diff --git a/gnu/packages/flex.scm b/gnu/packages/flex.scm
index 29c5c92766..e08b0c13db 100644
--- a/gnu/packages/flex.scm
+++ b/gnu/packages/flex.scm
@@ -45,22 +45,10 @@
(build-system gnu-build-system)
(inputs
(let ((bison-for-tests
- ;; Work around an incompatibility with Bison 3.0:
- ;; <http://lists.gnu.org/archive/html/bug-bison/2013-09/msg00014.html>.
(package
(inherit bison)
- (version "2.7.1")
- (source (origin
- (method url-fetch)
- (uri (string-append
- "mirror://gnu/bison/"
- "bison-" version ".tar.xz"))
- (sha256
- (base32
- "1yx7isx67sdmyijvihgyra1f59fwdz7sqriginvavfj5yb5ss2dl"))))
-
- ;; Unlike Bison 3.0, this version did not need Flex for its
- ;; tests, so it allows us to break the cycle.
+ ;; Disable tests, since they require flex.
+ (arguments '(#:tests? #f))
(inputs (alist-delete "flex" (package-inputs bison))))))
`(("bison" ,bison-for-tests)
("indent" ,indent))))
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 30143eba34..69e35cda0e 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -7,6 +7,7 @@
;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -54,15 +55,18 @@
(define-public freetype
(package
(name "freetype")
- (version "2.9")
+ (version "2.9.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://savannah/freetype/freetype-"
version ".tar.bz2"))
(sha256 (base32
- "12jcdz1in20yaa55izxalg3hm1pf7nydfrzps5bzb4zgihybmzz6"))
- (patches (search-patches "freetype-CVE-2018-6942.patch"))))
+ "0kg8w6qyiizlyzh4a8lpzslipcbv96hcg3rqqpnxba8ffbm8g3fv"))))
(build-system gnu-build-system)
+ (arguments
+ ;; The use of "freetype-config" is deprecated, but other packages still
+ ;; depend on it.
+ `(#:configure-flags (list "--enable-freetype-config")))
(native-inputs
`(("pkg-config" ,pkg-config)))
(propagated-inputs
@@ -375,7 +379,7 @@ applications should be.")
(define-public graphite2
(package
(name "graphite2")
- (version "1.3.11")
+ (version "1.3.12")
(source
(origin
(method url-fetch)
@@ -383,7 +387,7 @@ applications should be.")
"download/" version "/" name "-" version ".tgz"))
(sha256
(base32
- "0z5dcgh8r3678awq6fb8igik7xmar5m6z9xxwpkkhradhk8jxfds"))))
+ "1l1940d8fz67jm6a0x8cjb5p2dv48cvz3wcskwa83hamd70k15fd"))))
(build-system cmake-build-system)
(native-inputs
`(("python" ,python-2) ; because of "import imap" in tests
@@ -533,7 +537,10 @@ definitions.")
("libxml2" ,libxml2)
("pango" ,pango)
("potrace" ,potrace)
- ("python" ,python-wrapper)
+ ;; FIXME: We use Python 2 here because there is a bug in Python
+ ;; 3.7 that is triggered when Py_Main is called after Py_Init, as
+ ;; is done by fontforge. This will be fixed in Python 3.7.1.
+ ("python" ,python-2)
("zlib" ,zlib)))
(arguments
'(#:phases
diff --git a/gnu/packages/fribidi.scm b/gnu/packages/fribidi.scm
index 0368779240..dfd2a77c20 100644
--- a/gnu/packages/fribidi.scm
+++ b/gnu/packages/fribidi.scm
@@ -27,7 +27,7 @@
(define-public fribidi
(package
(name "fribidi")
- (version "1.0.2")
+ (version "1.0.5")
(source
(origin
(method url-fetch)
@@ -36,11 +36,8 @@
"/download/v" version "/fribidi-" version
".tar.bz2"))
(sha256
- (base32 "0aw3i1g96axbr96flw4543dvhb8zlgb0w8314ks6cq2g1i9invdx"))))
+ (base32 "1kp4b1hpx2ky20ixgy2xhj5iygfl7ps5k9kglh1z5i7mhykg4r3a"))))
(build-system gnu-build-system)
- (arguments
- `(#:configure-flags
- (list "--disable-docs"))) ; TODO: enable; requires c2man
(synopsis "Implementation of the Unicode bidirectional algorithm")
(description
"GNU FriBidi is an implementation of the Unicode Bidirectional
diff --git a/gnu/packages/gcc.scm b/gnu/packages/gcc.scm
index bdff2ddada..2f4198fdea 100644
--- a/gnu/packages/gcc.scm
+++ b/gnu/packages/gcc.scm
@@ -432,6 +432,7 @@ Go. It also includes runtime support libraries for these languages.")
(base32
"11zd1hgzkli3b2v70qsm2hyqppngd4616qc96lmm9zl2kl9yl32k"))
(patches (search-patches "gcc-arm-bug-71399.patch"
+ "gcc-libsanitizer-ustat.patch"
"gcc-strmov-store-file-names.patch"
"gcc-5.0-libvtv-runpath.patch"
"gcc-5-source-date-epoch-1.patch"
@@ -452,7 +453,8 @@ Go. It also includes runtime support libraries for these languages.")
"$OBJDUMP_FOR_TARGET -T"))
#t))))
(inputs
- `(("isl" ,isl)
+ `(;; GCC5 needs <isl/band.h> which is removed in later versions.
+ ("isl" ,isl-0.18)
,@(package-inputs gcc-4.7)))))
(define-public gcc-6
@@ -832,7 +834,7 @@ as the 'native-search-paths' field."
(define-public isl
(package
(name "isl")
- (version "0.18")
+ (version "0.19")
(source (origin
(method url-fetch)
(uri (list (string-append
@@ -843,7 +845,7 @@ as the 'native-search-paths' field."
name "-" version ".tar.gz")))
(sha256
(base32
- "06ybml6llhi4i56q90jnimbcgk1lpcdwhy9nxdxra2hxz3bhz2vb"))))
+ "1n4yz9rj24mv226hqbpw210ifvqkn8dgvpnkzf0s0lkq9zrjd5ym"))))
(build-system gnu-build-system)
(inputs `(("gmp" ,gmp)))
(home-page "http://isl.gforge.inria.fr/")
@@ -861,6 +863,20 @@ reduction, transitive closures on maps (which may encode infinite graphs),
dependence analysis and bounds on piecewise step-polynomials.")
(license lgpl2.1+)))
+(define-public isl-0.18
+ (package
+ (inherit isl)
+ (version "0.18")
+ (source (origin
+ (method url-fetch)
+ (uri (list (string-append "http://isl.gforge.inria.fr/isl-"
+ version ".tar.bz2")
+ (string-append %gcc-infrastructure
+ "isl-" version ".tar.gz")))
+ (sha256
+ (base32
+ "06ybml6llhi4i56q90jnimbcgk1lpcdwhy9nxdxra2hxz3bhz2vb"))))))
+
(define-public isl-0.11
(package
(inherit isl)
diff --git a/gnu/packages/gdb.scm b/gnu/packages/gdb.scm
index f0c4c8b804..d7b194685c 100644
--- a/gnu/packages/gdb.scm
+++ b/gnu/packages/gdb.scm
@@ -42,6 +42,7 @@
(method url-fetch)
(uri (string-append "mirror://gnu/gdb/gdb-"
version ".tar.xz"))
+ (patches (search-patches "gdb-python-3.7.patch"))
(sha256
(base32
"0g6hv9xk12aa58w77fydaldqr9a6b0a6bnwsq87jfc6lkcbc7p4p"))))
diff --git a/gnu/packages/ghostscript.scm b/gnu/packages/ghostscript.scm
index 1240b1dc16..cd7cd604fd 100644
--- a/gnu/packages/ghostscript.scm
+++ b/gnu/packages/ghostscript.scm
@@ -4,7 +4,7 @@
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2013, 2015, 2016, 2017 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com>
-;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
@@ -52,7 +52,7 @@
(sha256 (base32
"083xisy6z01zhm7p7rgk4bx9d6zlr8l20qkfv1g29ylnhgwzvij8"))))
(build-system gnu-build-system)
- (inputs `(("libjpeg-8" ,libjpeg-8)
+ (inputs `(("libjpeg" ,libjpeg)
("libtiff" ,libtiff)
("zlib" ,zlib)))
(synopsis "Little CMS, a small-footprint colour management engine")
@@ -132,7 +132,6 @@ printing, and psresize, for adjusting page sizes.")
(define-public ghostscript
(package
(name "ghostscript")
- (replacement ghostscript/fixed)
(version "9.23")
(source
(origin
@@ -145,6 +144,7 @@ printing, and psresize, for adjusting page sizes.")
(base32
"1ng8d9fm5lza7k1f7ybc791275c07z5hcmpkrl2i226nshkxrkhz"))
(patches (search-patches "ghostscript-runpath.patch"
+ "ghostscript-CVE-2018-10194.patch"
"ghostscript-no-header-creationdate.patch"
"ghostscript-no-header-id.patch"
"ghostscript-no-header-uuid.patch"))
@@ -251,16 +251,6 @@ output file formats and printers.")
(home-page "https://www.ghostscript.com/")
(license license:agpl3+)))
-(define-public ghostscript/fixed
- (hidden-package
- (package
- (inherit ghostscript)
- (source
- (origin
- (inherit (package-source ghostscript))
- (patches (append (origin-patches (package-source ghostscript))
- (search-patches "ghostscript-CVE-2018-10194.patch"))))))))
-
(define-public ghostscript/x
(package/inherit ghostscript
(name (string-append (package-name ghostscript) "-with-x"))
diff --git a/gnu/packages/glib.scm b/gnu/packages/glib.scm
index 33b77555b5..2687ece081 100644
--- a/gnu/packages/glib.scm
+++ b/gnu/packages/glib.scm
@@ -80,7 +80,7 @@
(define dbus
(package
(name "dbus")
- (version "1.12.6")
+ (version "1.12.10")
(source (origin
(method url-fetch)
(uri (string-append
@@ -88,7 +88,7 @@
version ".tar.gz"))
(sha256
(base32
- "05picaq8j60wlwyi84qvw5liw3nd0cws9va3krnc3pms0wm906v2"))
+ "1xywijmgfad4m3cxp0b4l6kvypwc53ckmhwwzbrc6n32jwj3ssab"))
(patches (search-patches "dbus-helper-search-path.patch"))))
(build-system gnu-build-system)
(arguments
@@ -150,7 +150,7 @@ shared NFS home directories.")
(define glib
(package
(name "glib")
- (version "2.56.0")
+ (version "2.56.2")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/"
@@ -158,7 +158,7 @@ shared NFS home directories.")
name "-" version ".tar.xz"))
(sha256
(base32
- "1iqgi90fmpl3l23jm2iv44qp7hqsxvnv7978s18933bvx4bnxvzc"))
+ "12d738n1wpvrn39zvy9xazg5h6vzyiwsw8z1qibcj09mh4bbsjnn"))
(patches (search-patches "glib-tests-timer.patch"))))
(build-system gnu-build-system)
(outputs '("out" ; everything
@@ -303,14 +303,14 @@ dynamic loading, and an object system.")
(define gobject-introspection
(package
(name "gobject-introspection")
- (version "1.56.0")
+ (version "1.56.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/"
"gobject-introspection/" (version-major+minor version)
"/gobject-introspection-" version ".tar.xz"))
(sha256
- (base32 "1y50pbn5qqbcv2h9rkz96wvv5jls2gma9bkqjq6wapmaszx5jw0d"))
+ (base32 "0jx2kryjd7l0vl5gb3qp1qjfy3cjiizvcd1snsm7pzwrzz67aa2v"))
(modules '((guix build utils)))
(snippet
'(begin
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index c172a6a2be..9e72c7ae39 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -122,6 +122,7 @@
#:use-module (gnu packages ssh)
#:use-module (gnu packages xml)
#:use-module (gnu packages gl)
+ #:use-module (gnu packages graphviz)
#:use-module (gnu packages compression)
#:use-module (gnu packages spice)
#:use-module (gnu packages tex)
@@ -938,14 +939,14 @@ guidelines.")
(define-public shared-mime-info
(package
(name "shared-mime-info")
- (version "1.8")
+ (version "1.9")
(source (origin
(method url-fetch)
(uri (string-append "https://freedesktop.org/~hadess/"
"shared-mime-info-" version ".tar.xz"))
(sha256
(base32
- "1sc96lv9dp1lkvs8dh3ngm3hbjb274d363dl9avhb61il3qmxx9a"))))
+ "10ywzhzg8v1xmb9sz5xbqaci90id38knswigynyl33i29vn360aw"))))
(build-system gnu-build-system)
(arguments
;; The build system appears not to be parallel-safe.
@@ -2034,7 +2035,7 @@ passwords in the GNOME keyring.")
(define-public vala
(package
(name "vala")
- (version "0.36.3")
+ (version "0.40.7")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/" name "/"
@@ -2042,7 +2043,7 @@ passwords in the GNOME keyring.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0706izk9prxqclm7gv4f63diwnlc1llvfl5sc9ghqbgn076lx2mc"))))
+ "1v0ak68lrnbb5lyd48j6sxa35vfrii86zmhxdhkdb85k1bv65rmy"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@@ -2050,20 +2051,25 @@ passwords in the GNOME keyring.")
(add-before 'check 'pre-check
(lambda _
(setenv "CC" "gcc")
+ (substitute* "valadoc/tests/testrunner.sh"
+ (("export PKG_CONFIG_PATH=" m)
+ (string-append m "$PKG_CONFIG_PATH:")))
;; For missing '/etc/machine-id'.
(setenv "DBUS_FATAL_WARNINGS" "0")
- #t)))
- ;; Build the Vala API generator
- #:configure-flags '("--enable-vapigen")))
+ #t)))))
(native-inputs
`(("pkg-config" ,pkg-config)
("flex" ,flex)
("bison" ,bison)
("xsltproc" ,libxslt)
+ ("grep" ,grep)
+ ("sed" ,sed)
("dbus" ,dbus) ; for dbus tests
("gobject-introspection" ,gobject-introspection))) ; for gir tests
+ (inputs
+ `(("graphviz" ,graphviz)))
(propagated-inputs
- `(("glib" ,glib))) ; required by libvala-0.26.pc
+ `(("glib" ,glib))) ; required by libvala-0.40.pc
(home-page "https://live.gnome.org/Vala/")
(synopsis "Compiler for the GObject type system")
(description
@@ -5860,7 +5866,7 @@ is complete it provides a graphical representation of each selected folder.")
(define-public gnome-backgrounds
(package
(name "gnome-backgrounds")
- (version "3.26.2")
+ (version "3.28.0")
(source
(origin
(method url-fetch)
@@ -5869,8 +5875,8 @@ is complete it provides a graphical representation of each selected folder.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0kzrh5h0cfby3rhsy31d1w1c0rr3wcc845kv6zibqw1x8v9si2rs"))))
- (build-system glib-or-gtk-build-system)
+ "1qgim0yhzjgcq172y4vp5hqz4rh1ak38a7pgi6s7dq0wklyrcnxj"))))
+ (build-system meson-build-system)
(native-inputs
`(("intltool" ,intltool)))
(home-page "https://git.gnome.org/browse/gnome-backgrounds")
diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm
index d5fb12650f..1da48bfa66 100644
--- a/gnu/packages/gnupg.scm
+++ b/gnu/packages/gnupg.scm
@@ -72,7 +72,7 @@
(define-public libgpg-error
(package
(name "libgpg-error")
- (version "1.28")
+ (version "1.32")
(source
(origin
(method url-fetch)
@@ -80,8 +80,7 @@
version ".tar.bz2"))
(sha256
(base32
- "0jfsfnh9bxlxiwxws60yah4ybjw2hshmvqp31pri4m4h8ivrbnry"))
- (patches (search-patches "libgpg-error-aarch64-logging-fix.patch"))))
+ "1jj08ns4sh1hmafqp1giskvdicdz18la516va26jycy27kkwaif3"))))
(build-system gnu-build-system)
(home-page "https://gnupg.org")
(synopsis "Library of error values for GnuPG components")
@@ -94,32 +93,19 @@ Daemon and possibly more in the future.")
(properties '((ftp-server . "ftp.gnupg.org")
(ftp-directory . "/gcrypt/libgpg-error")))))
-;; Some packages (e.g. GPGME) require a newer libgpg-error to deal with
-;; error codes from recent GnuPG. Remove this in the next rebuild cycle.
-(define-public libgpg-error-1.31
- (package
- (inherit libgpg-error)
- (version "1.31")
- (source (origin
- (method url-fetch)
- (uri (string-append "mirror://gnupg/libgpg-error/libgpg-error-"
- version ".tar.bz2"))
- (sha256
- (base32
- "1vx4nw6rxh2biy3h8n96fyr86q29h8gjl6837437i51jr4isil20"))))))
-
(define-public libgcrypt
(package
- (replacement libgcrypt/fixed)
(name "libgcrypt")
- (version "1.8.2")
+ (version "1.8.3")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnupg/libgcrypt/libgcrypt-"
version ".tar.bz2"))
(sha256
(base32
- "01sca9m8hm6b5v8hmqsfdjhyz013869p1f0fxw9ln52qfnp4q1n8"))))
+ "0z5gs1khzyknyfjr19k8gk4q148s6q987ya85cpn0iv70fz91v36"))
+ (patches
+ (search-patches "libgcrypt-make-yat2m-reproducible.patch"))))
(build-system gnu-build-system)
(propagated-inputs
`(("libgpg-error-host" ,libgpg-error)))
@@ -145,19 +131,6 @@ generation.")
(properties '((ftp-server . "ftp.gnupg.org")
(ftp-directory . "/gcrypt/libgcrypt")))))
-(define libgcrypt/fixed
- (package
- (inherit libgcrypt)
- (name "libgcrypt")
- (version "1.8.3")
- (source (origin
- (method url-fetch)
- (uri (string-append "mirror://gnupg/libgcrypt/libgcrypt-"
- version ".tar.bz2"))
- (sha256
- (base32
- "0z5gs1khzyknyfjr19k8gk4q148s6q987ya85cpn0iv70fz91v36"))))))
-
(define-public libassuan
(package
(name "libassuan")
@@ -406,7 +379,7 @@ libskba (working with X.509 certificates and CMS data).")
`(("gnupg" ,gnupg)))
(propagated-inputs
;; Needs to be propagated because gpgme.h includes gpg-error.h.
- `(("libgpg-error" ,libgpg-error-1.31)))
+ `(("libgpg-error" ,libgpg-error)))
(inputs
`(("libassuan" ,libassuan)))
(home-page "https://www.gnupg.org/related_software/gpgme/")
diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm
index 3dbc84a643..38b65946b8 100644
--- a/gnu/packages/gtk.scm
+++ b/gnu/packages/gtk.scm
@@ -8,7 +8,7 @@
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Andy Wingo <wingo@igalia.com>
;;; Copyright © 2015 David Hashe <david.hashe@dhashe.com>
-;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
+;;; Coypright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Fabian Harfert <fhmgufs@web.de>
;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
@@ -112,14 +112,14 @@ tools have full access to view and control running applications.")
(define-public cairo
(package
(name "cairo")
- (version "1.14.10")
+ (version "1.14.12")
(source (origin
(method url-fetch)
(uri (string-append "https://cairographics.org/releases/cairo-"
version ".tar.xz"))
(sha256
(base32
- "02banr0wxckq62nbhc3mqidfdh2q956i2r7w2hd9bjgjb238g1vy"))
+ "05mzyxkvsfc1annjw2dja8vka01ampp9pp93lg09j8hba06g144c"))
(patches (search-patches "cairo-CVE-2016-9082.patch"))))
(build-system gnu-build-system)
(propagated-inputs
@@ -178,7 +178,7 @@ affine transformation (scale, rotation, shear, etc.).")
(define-public harfbuzz
(package
(name "harfbuzz")
- (version "1.7.6")
+ (version "1.8.8")
(source (origin
(method url-fetch)
(uri (string-append "https://www.freedesktop.org/software/"
@@ -186,7 +186,7 @@ affine transformation (scale, rotation, shear, etc.).")
version ".tar.bz2"))
(sha256
(base32
- "16rf7qwgy1gza74v2ws79zdwwb1lpvgz2abwwm8ws9j82cwysyys"))))
+ "1ag3scnm1fcviqgx2p4858y433mr0ndqw6zccnccrqcr9mpcird8"))))
(build-system gnu-build-system)
(outputs '("out"
"bin")) ; 160K, only hb-view depend on cairo
@@ -217,7 +217,7 @@ affine transformation (scale, rotation, shear, etc.).")
(define-public pango
(package
(name "pango")
- (version "1.42.0")
+ (version "1.42.4")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/pango/"
@@ -225,18 +225,18 @@ affine transformation (scale, rotation, shear, etc.).")
name "-" version ".tar.xz"))
(sha256
(base32
- "0illn78nfwpa8y5knh9ir74wa1skc2hi8f3ny19zgpyf7n5dh94r"))))
+ "17bwb7dgbncrfsmchlib03k9n3xaalirb39g3yb43gg8cg6p8aqx"))))
(build-system gnu-build-system)
(propagated-inputs
;; These are all in Requires or Requires.private of the '.pc' files.
`(("cairo" ,cairo)
+ ("fribidi" ,fribidi)
("fontconfig" ,fontconfig)
("freetype" ,freetype)
("glib" ,glib)
("harfbuzz" ,harfbuzz)))
(inputs
- `(("fribidi" ,fribidi)
- ("zlib" ,zlib)
+ `(("zlib" ,zlib)
;; Some packages, such as Openbox, expect Pango to be built with the
;; optional libxft support.
diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index f2a252b8d3..b44db6a6bf 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -228,7 +228,7 @@ without requiring the source code to be rewritten.")
(define-public guile-2.2
(package (inherit guile-2.0)
(name "guile")
- (version "2.2.3")
+ (version "2.2.4")
(source (origin
(method url-fetch)
@@ -238,7 +238,7 @@ without requiring the source code to be rewritten.")
".tar.xz"))
(sha256
(base32
- "11j01agvnci2cx32wwpqs9078856yxmvs15gcsz7ganpkj2ahlw3"))
+ "07p3g0v2ba2vlfbfidqzlgbhnzdx46wh2rgc5gszq1mjyx5bks6r"))
(modules '((guix build utils)))
;; Remove the pre-built object files. Instead, build everything
@@ -287,35 +287,6 @@ without requiring the source code to be rewritten.")
(max-silent-time . 36000))))) ;10 hours (needed on ARM
; when heavily loaded)
-(define-public guile-2.2.2
- ;; Keep it so that, when 'guix' runs on 2.2.2, 'guix pull' compiles objects
- ;; with 2.2.2, thereby avoiding the ABI incompatibility issues described in
- ;; <https://bugs.gnu.org/29570>.
- (package
- (inherit guile-2.2)
- (version "2.2.2")
- (source (origin
- (inherit (package-source guile-2.2))
- (uri (string-append "mirror://gnu/guile/guile-" version
- ".tar.xz"))
- (sha256
- (base32
- "1azm25zcmxif0skxfrp11d2wc89nrzpjaann9yxdw6pvjxhs948w"))))))
-
-(define-public guile-2.2.4
- ;; This version contains important bug fixes, in particular wrt. to crashes
- ;; of multi-threaded code as used by 'guix pull' and grafting.
- (package
- (inherit guile-2.2)
- (version "2.2.4")
- (source (origin
- (inherit (package-source guile-2.2))
- (uri (string-append "mirror://gnu/guile/guile-" version
- ".tar.xz"))
- (sha256
- (base32
- "07p3g0v2ba2vlfbfidqzlgbhnzdx46wh2rgc5gszq1mjyx5bks6r"))))))
-
(define-public guile-next
(deprecated-package "guile-next" guile-2.2))
diff --git a/gnu/packages/icu4c.scm b/gnu/packages/icu4c.scm
index c4d3703794..cbba9aa42a 100644
--- a/gnu/packages/icu4c.scm
+++ b/gnu/packages/icu4c.scm
@@ -32,7 +32,7 @@
(define-public icu4c
(package
(name "icu4c")
- (version "61.1")
+ (version "62.1")
(source (origin
(method url-fetch)
(uri (string-append
@@ -42,7 +42,7 @@
(string-map (lambda (x) (if (char=? x #\.) #\_ x)) version)
"-src.tgz"))
(sha256
- (base32 "1vxgkx0cyvdy00a9yd5khkx14r5kcndkax2wa99klm52x2dgh1yh"))))
+ (base32 "18ssgnwzzpm1g1fvbm9h1fvryiwxvvn5wc3fdakdsl33cs6qdn9x"))))
(build-system gnu-build-system)
(inputs
`(("perl" ,perl)))
@@ -58,7 +58,15 @@
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'chdir-to-source
- (lambda _ (chdir "source") #t)))))
+ (lambda _ (chdir "source") #t))
+ (add-after 'install 'avoid-coreutils-reference
+ ;; Don't keep a reference to the build tools.
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (substitute* (find-files (string-append out "/lib/icu")
+ "\\.inc$")
+ (("INSTALL_CMD=.*/bin/install") "INSTALL_CMD=install"))
+ #t))))))
(synopsis "International Components for Unicode")
(description
"ICU is a set of C/C++ and Java libraries providing Unicode and
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index e50802d24f..d70811bccf 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -253,13 +253,13 @@ files. It can compress them as much as 40% losslessly.")
(define-public libjpeg
(package
(name "libjpeg")
- (version "9b")
+ (version "9c")
(source (origin
(method url-fetch)
(uri (string-append "http://www.ijg.org/files/jpegsrc.v"
version ".tar.gz"))
(sha256 (base32
- "0lnhpahgdwlrkd41lx6cr90r199f8mc6ydlh7jznj5klvacd63r4"))))
+ "08kixcf3a7s9x91174abjnk1xbvj4v8crdc73zi4k9h3jfbm00k5"))))
(build-system gnu-build-system)
(synopsis "Library for handling JPEG files")
(description
@@ -393,7 +393,6 @@ extracting icontainer icon files.")
(define-public libtiff
(package
(name "libtiff")
- (replacement libtiff/fixed)
(version "4.0.9")
(source
(origin
@@ -404,7 +403,9 @@ extracting icontainer icon files.")
(base32
"1kfg4q01r4mqn7dj63ifhi6pmqzbf4xax6ni6kkk81ri5kndwyvf"))
(patches (search-patches "libtiff-CVE-2017-9935.patch"
- "libtiff-CVE-2017-18013.patch"))))
+ "libtiff-CVE-2017-18013.patch"
+ "libtiff-CVE-2018-8905.patch"
+ "libtiff-CVE-2018-10963.patch"))))
(build-system gnu-build-system)
(outputs '("out"
"doc")) ;1.3 MiB of HTML documentation
@@ -426,17 +427,6 @@ collection of tools for doing simple manipulations of TIFF images.")
"See COPYRIGHT in the distribution."))
(home-page "http://www.simplesystems.org/libtiff/")))
-(define libtiff/fixed
- (package
- (inherit libtiff)
- (source
- (origin
- (inherit (package-source libtiff))
- (patches
- (append (origin-patches (package-source libtiff))
- (search-patches "libtiff-CVE-2018-8905.patch"
- "libtiff-CVE-2018-10963.patch")))))))
-
(define-public leptonica
(package
(name "leptonica")
diff --git a/gnu/packages/inkscape.scm b/gnu/packages/inkscape.scm
index de9940df1c..1673cc602e 100644
--- a/gnu/packages/inkscape.scm
+++ b/gnu/packages/inkscape.scm
@@ -1,7 +1,7 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014 John Darrington <jmd@gnu.org>
;;; Copyright © 2014, 2016 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
@@ -54,7 +54,24 @@
"inkscape-" version ".tar.bz2"))
(sha256
(base32
- "1chng2yw8dsjxc9gf92aqv7plj11cav8ax321wmakmv5bb09cch6"))))
+ "1chng2yw8dsjxc9gf92aqv7plj11cav8ax321wmakmv5bb09cch6"))
+ (patches
+ (list (origin
+ (method url-fetch)
+ (uri (string-append "https://gitlab.com/inkscape/inkscape/commit/"
+ "a600c6438fef2f4c06f9a4a7d933d99fb054a973.diff"))
+ (file-name "inkscape-poppler-compat.patch")
+ (sha256
+ (base32
+ "19dam5vsy571xszgjddl5g0958dmcsv0wvgxidp4bhj2lban222i")))
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://gitlab.com/inkscape/inkscape/commit/"
+ "fa1c469aa8c005e07bb8676d72af9f7c16fae3e0.diff"))
+ (file-name "inkscape-poppler-compat2.patch")
+ (sha256
+ (base32
+ "14k9yrfjz4nx3bz9dk91q74mc0i7rvl2qzkwhcy1br71yqjvngn5")))))))
(build-system cmake-build-system)
(inputs
`(("aspell" ,aspell)
diff --git a/gnu/packages/jemalloc.scm b/gnu/packages/jemalloc.scm
index 5086df7a1b..cb870208e4 100644
--- a/gnu/packages/jemalloc.scm
+++ b/gnu/packages/jemalloc.scm
@@ -32,7 +32,7 @@
(define-public jemalloc
(package
(name "jemalloc")
- (version "5.0.1")
+ (version "5.1.0")
(source (origin
(method url-fetch)
(uri (string-append
@@ -40,8 +40,7 @@
version "/jemalloc-" version ".tar.bz2"))
(sha256
(base32
- "1sf3lzgb0y8nnyzmp4zrca3sngdxw3kfh20sna9z03jv74fph528"))
- (patches (search-patches "jemalloc-arm-address-bits.patch"))))
+ "0s3jpcyhzia8d4k0xyc67is78kg416p9yc3c2f9w6fhhqqffd5jk"))))
(build-system gnu-build-system)
(arguments
`(#:phases
diff --git a/gnu/packages/kerberos.scm b/gnu/packages/kerberos.scm
index 22d74d32df..508f9c4bd2 100644
--- a/gnu/packages/kerberos.scm
+++ b/gnu/packages/kerberos.scm
@@ -6,6 +6,7 @@
;;; Copyright © 2012, 2013 Nikita Karetnikov <nikita@karetnikov.org>
;;; Copyright © 2012, 2017 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com>
;;;
;;; This file is part of GNU Guix.
@@ -47,7 +48,7 @@
(define-public mit-krb5
(package
(name "mit-krb5")
- (version "1.16")
+ (version "1.16.1")
(source (origin
(method url-fetch)
(uri (list
@@ -59,7 +60,7 @@
"/krb5-" version ".tar.gz")))
(sha256
(base32
- "024yjr15ij0qdnay0bcqfpclgfri0qa8iw4r5zdlryxhhdgi5szs"))))
+ "05qis9l93hhxaknbp0a2v5cr24fsy52fqx20aqqcgl1s9qwzwkr1"))))
(build-system gnu-build-system)
(native-inputs
`(("bison" ,bison)
@@ -116,7 +117,7 @@ cryptography.")
'(;; This is required since we patch some of the build scripts.
;; Remove for the next Shishi release after 1.0.2 or when
;; removing 'shishi-fix-libgcrypt-detection.patch'.
- #:configure-flags '("ac_cv_libgcrypt=yes")))
+ #:configure-flags '("ac_cv_libgcrypt=yes" "--disable-static")))
(native-inputs `(("pkg-config" ,pkg-config)))
(inputs
`(("gnutls" ,gnutls)
diff --git a/gnu/packages/libbsd.scm b/gnu/packages/libbsd.scm
index 58b0be872c..a616de70bd 100644
--- a/gnu/packages/libbsd.scm
+++ b/gnu/packages/libbsd.scm
@@ -25,14 +25,14 @@
(define-public libbsd
(package
(name "libbsd")
- (version "0.8.7")
+ (version "0.9.1")
(source (origin
(method url-fetch)
(uri (string-append "https://libbsd.freedesktop.org/releases/"
"libbsd-" version ".tar.xz"))
(sha256
(base32
- "0c9bl49zs0xdddcwj5dh0lay9sxi2m1yi74848g8p87mb87g2j7m"))))
+ "1957w2wi7iqar978qlfsm220dwywnrh5m58nrnn9zmi74ds3bn2n"))))
(build-system gnu-build-system)
(synopsis "Utility functions from BSD systems")
(description "This library provides useful functions commonly found on BSD
diff --git a/gnu/packages/libevent.scm b/gnu/packages/libevent.scm
index a7752dc5f0..bc7f6c670d 100644
--- a/gnu/packages/libevent.scm
+++ b/gnu/packages/libevent.scm
@@ -122,24 +122,17 @@ limited support for fork events.")
(define-public libuv
(package
(name "libuv")
- (version "1.19.2")
+ (version "1.23.0")
(source (origin
(method url-fetch)
(uri (string-append "https://dist.libuv.org/dist/v" version
"/libuv-v" version ".tar.gz"))
(sha256
(base32
- "1msk9ac1z69whww88ibrwjqkd1apdla6l77cm2fwy5kigq0z5g3w"))))
+ "09yf7c71n8b80nbsv4lsmq5nqmb0rylhpx3z9jgkv5za9lr6sx6i"))))
(build-system gnu-build-system)
(arguments
- '(#:phases (modify-phases %standard-phases
- (add-after 'unpack 'autogen
- (lambda _
- ;; Fashionable people don't run 'make dist' these days, so
- ;; we need to do that ourselves.
- (invoke "sh" "autogen.sh"))))
-
- ;; XXX: Some tests want /dev/tty, attempt to make connections, etc.
+ '(;; XXX: Some tests want /dev/tty, attempt to make connections, etc.
#:tests? #f))
(native-inputs `(("autoconf" ,autoconf-wrapper)
("automake" ,automake)
diff --git a/gnu/packages/libffi.scm b/gnu/packages/libffi.scm
index 0d54c305b2..d1b910bd07 100644
--- a/gnu/packages/libffi.scm
+++ b/gnu/packages/libffi.scm
@@ -50,7 +50,10 @@
(patches (search-patches "libffi-3.2.1-complex-alpha.patch"))))
(build-system gnu-build-system)
(arguments
- `(#:phases
+ `(;; Prevent the build system from passing -march and -mtune to the
+ ;; compiler. See "ax_cc_maxopt.m4" and "ax_gcc_archflag.m4".
+ #:configure-flags '("--enable-portable-binary" "--without-gcc-arch")
+ #:phases
(modify-phases %standard-phases
(add-after 'install 'post-install
(lambda* (#:key outputs #:allow-other-keys)
@@ -79,13 +82,13 @@ conversions for values passed between the two languages.")
(define-public python-cffi
(package
(name "python-cffi")
- (version "1.11.4")
+ (version "1.11.5")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cffi" version))
(sha256
- (base32 "07fiy4wqg8g08x38r04ydjr8n6g0g74gb8si8b6jhymijalq746z"))))
+ (base32 "1x3lrj928dcxx1k8k9gf3s4s3jwvzv8mc3kkyg1g7c3a1sc1f3z9"))))
(build-system python-build-system)
(outputs '("out" "doc"))
(inputs
diff --git a/gnu/packages/libidn.scm b/gnu/packages/libidn.scm
index 249c3f8458..719a0f0b4b 100644
--- a/gnu/packages/libidn.scm
+++ b/gnu/packages/libidn.scm
@@ -4,6 +4,7 @@
;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -32,26 +33,18 @@
(define-public libidn
(package
(name "libidn")
- (version "1.34")
+ (version "1.35")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/libidn/libidn-" version
".tar.gz"))
(sha256
(base32
- "0g3fzypp0xjcgr90c5cyj57apx1cmy0c6y9lvw2qdcigbyby469p"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; The gnulib test-lock test is prone to writer starvation
- ;; with our glibc@2.25, which prefers readers, so disable it.
- ;; The gnulib commit b20e8afb0b2 should fix this once
- ;; incorporated here.
- (substitute* "lib/gltests/Makefile.in"
- (("test-lock\\$\\(EXEEXT\\) ") ""))
- #t))))
+ "07pyy0afqikfq51z5kbzbj9ldbd12mri0zvx0mfv3ds6bc0g26pi"))))
(build-system gnu-build-system)
-;; FIXME: No Java and C# libraries are currently built.
+ ;; FIXME: No Java and C# libraries are currently built.
+ (arguments
+ `(#:configure-flags '("--disable-static")))
(synopsis "Internationalized string processing library")
(description
"libidn is a library implementing of the Stringprep, Punycode and IDNA
@@ -66,19 +59,21 @@ Java libraries.")
(define-public libidn2
(package
(name "libidn2")
- (version "2.0.4")
+ (version "2.0.5")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnu/libidn/" name "-" version
".tar.lz"))
(sha256
(base32
- "00f2fyw5kwr9is3cdn5h9arzxp0lnvg0z9bb9zyfs0dq81gaqim4"))))
+ "0s4nkazy1xbs6bbq4farby1xhmhzk5bdclbil5gqdwyzxsgabxqg"))))
(native-inputs
`(("lzip" ,lzip)))
(inputs
`(("libunistring" ,libunistring)))
(build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags '("--disable-static")))
(synopsis "Internationalized domain name library for IDNA2008")
(description "Libidn2 is an internationalized domain library implementing
the IDNA2008 specifications. Libidn2 is believed to be a complete IDNA2008
diff --git a/gnu/packages/libsigsegv.scm b/gnu/packages/libsigsegv.scm
index 7f63bb26c4..927a12f4cf 100644
--- a/gnu/packages/libsigsegv.scm
+++ b/gnu/packages/libsigsegv.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012, 2013 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2012, 2013, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
;;;
;;; This file is part of GNU Guix.
@@ -38,20 +38,23 @@
(home-page "https://www.gnu.org/software/libsigsegv/")
(synopsis "Library for handling page faults")
(arguments
- ;; On MIPS, work around this error:
- ;;
- ;; In file included from fault-linux-mips-old.h:18:0,
- ;; [...]
- ;; linux-libre-headers-cross-mips64el-linux-gnu-3.3.8/include/asm/sigcontext.h:57:8: error: redefinition of 'struct sigcontext'
- (if (string-contains (or (%current-target-system) (%current-system))
- "mips64el")
- `(#:phases (modify-phases %standard-phases
- (add-before 'configure 'patch-mips-old-h
- (lambda _
- (substitute* "src/fault-linux-mips-old.h"
- (("#include <asm/sigcontext\\.h>") ""))
- #t))))
- '()))
+ `(;; The shared library isn't built by default but some packages need it.
+ #:configure-flags '("--enable-shared")
+
+ ;; On MIPS, work around this error:
+ ;;
+ ;; In file included from fault-linux-mips-old.h:18:0,
+ ;; [...]
+ ;; linux-libre-headers-cross-mips64el-linux-gnu-3.3.8/include/asm/sigcontext.h:57:8: error: redefinition of 'struct sigcontext'
+ ,@(if (string-contains (or (%current-target-system) (%current-system))
+ "mips64el")
+ `(#:phases (modify-phases %standard-phases
+ (add-before 'configure 'patch-mips-old-h
+ (lambda _
+ (substitute* "src/fault-linux-mips-old.h"
+ (("#include <asm/sigcontext\\.h>") ""))
+ #t))))
+ '())))
(description
"GNU libsigsegv is a library to handle page faults, which occur when a
program tries to access an unavailable region of memory, in user mode. By
diff --git a/gnu/packages/libunistring.scm b/gnu/packages/libunistring.scm
index 6a3afd4f05..fda839be54 100644
--- a/gnu/packages/libunistring.scm
+++ b/gnu/packages/libunistring.scm
@@ -5,6 +5,8 @@
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -32,7 +34,7 @@
(define-public libunistring
(package
(name "libunistring")
- (version "0.9.9")
+ (version "0.9.10")
(source (origin
(method url-fetch)
(uri (string-append
@@ -40,24 +42,25 @@
version ".tar.xz"))
(sha256
(base32
- "0cx8v6862w7vvacbkcvg49kfx731ckdgaybmzw1zav71zkn97nd4"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; The gnulib test-lock test is prone to writer starvation
- ;; with our glibc@2.25, which prefers readers, so disable it.
- ;; The gnulib commit b20e8afb0b2 should fix this once
- ;; incorporated here.
- (substitute* "tests/Makefile.in"
- (("test-lock\\$\\(EXEEXT\\) ") ""))
- #t))))
+ "1mq57h06622m6qc5cv347fc3qk5mj840axw3c0vd7qmnwk1v53zb"))))
(propagated-inputs (libiconv-if-needed))
+ (outputs '("out" "static"))
(build-system gnu-build-system)
(arguments
;; Work around parallel build issue whereby C files may be compiled before
;; config.h is built: see <http://hydra.gnu.org/build/59381/nixlog/2/raw> and
;; <http://lists.openembedded.org/pipermail/openembedded-core/2012-April/059850.html>.
- '(#:parallel-build? #f))
+ '(#:parallel-build? #f
+ #:phases (modify-phases %standard-phases
+ (add-after 'install 'move-static-library
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (static (assoc-ref outputs "static")))
+ (with-directory-excursion (string-append out "/lib")
+ (install-file "libunistring.a"
+ (string-append static "/lib"))
+ (delete-file "libunistring.a")
+ #t)))))))
(synopsis "C library for manipulating Unicode strings")
(description
"GNU libunistring is a library providing functions to manipulate
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 9b9cf01560..8bb0162a47 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -163,13 +163,13 @@ defconfig. Return the appropriate make target if applicable, otherwise return
(define-public linux-libre-headers
(package
(name "linux-libre-headers")
- (version "4.14.26")
+ (version "4.14.67")
(source (origin
(method url-fetch)
(uri (linux-libre-urls version))
(sha256
(base32
- "1m2zr17wpasg5riysbaa4g5i492jzr93py2jm088ki818s4a9cm3"))))
+ "050zvdxjy6sc64q75pr1gxsmh49chwav2pwxz8xlif39bvahnrpg"))))
(build-system gnu-build-system)
(native-inputs `(("perl" ,perl)))
(arguments
@@ -298,12 +298,6 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration."
(or (%current-target-system) (%current-system)))
((or "x86_64" "i386")
`(("gcc" ,gcc-7)))
- ("arm64"
- ;; Work around a binutils 2.30 bug where some kernel symbols would
- ;; be incorrectly marked as relocatable:
- ;; <https://sourceware.org/bugzilla/show_bug.cgi?id=22764>.
- `(("ld-wrapper" ,(make-ld-wrapper "ld-wrapper"
- #:binutils binutils/fixed))))
(_
'()))
,@(match (and configuration-file
@@ -494,17 +488,17 @@ It has been modified to remove all non-free binary blobs.")
(define-public linux-pam
(package
(name "linux-pam")
- (version "1.3.0")
+ (version "1.3.1")
(source
(origin
- (method url-fetch)
- (uri (string-append
- "http://www.linux-pam.org/library/"
- "Linux-PAM-" version ".tar.bz2"))
- (sha256
- (base32
- "1fyi04d5nsh8ivd0rn2y0z83ylgc0licz7kifbb6xxi2ylgfs6i4"))
- (patches (search-patches "linux-pam-no-setfsuid.patch"))))
+ (method url-fetch)
+ (uri (string-append
+ "https://github.com/linux-pam/linux-pam/releases/download/v"
+ version "/Linux-PAM-" version ".tar.xz"))
+ (sha256
+ (base32
+ "1nyh9kdi3knhxcbv5v4snya0g3gff0m671lnvqcbygw3rm77mx7g"))
+ (patches (search-patches "linux-pam-no-setfsuid.patch"))))
(build-system gnu-build-system)
(native-inputs
@@ -586,7 +580,7 @@ providing the system administrator with some help in common tasks.")
(define-public util-linux
(package
(name "util-linux")
- (version "2.32")
+ (version "2.32.1")
(source (origin
(method url-fetch)
(uri (string-append "mirror://kernel.org/linux/utils/"
@@ -594,7 +588,7 @@ providing the system administrator with some help in common tasks.")
name "-" version ".tar.xz"))
(sha256
(base32
- "0d2758kjll5xqm5fpp3sww1h66aahx161sf2b60jxqv4qymrfwvc"))
+ "1ck7d8srw5szpjq7v0gpmjahnjs6wgqzm311ki4gazww6xx71rl6"))
(patches (search-patches "util-linux-tests.patch"))
(modules '((guix build utils)))
(snippet
@@ -2542,9 +2536,7 @@ in a digital read-out.")
(package
(name "perf")
(version (package-version linux-libre))
- (source (origin
- (inherit (package-source linux-libre))
- (patches (search-patches "perf-gcc-ice.patch"))))
+ (source (package-source linux-libre))
(build-system gnu-build-system)
(arguments
'(#:phases
@@ -3307,6 +3299,7 @@ and copy/paste text in the console and in xterm.")
("libuuid:static" ,util-linux "static")
("lzo" ,lzo)
("zlib" ,zlib)
+ ("zlib:static" ,zlib "static")
("zstd" ,zstd)))
(native-inputs `(("pkg-config" ,pkg-config)
("asciidoc" ,asciidoc)
diff --git a/gnu/packages/m4.scm b/gnu/packages/m4.scm
index b223ce91d1..090f5578e3 100644
--- a/gnu/packages/m4.scm
+++ b/gnu/packages/m4.scm
@@ -32,6 +32,7 @@
(method url-fetch)
(uri (string-append "mirror://gnu/m4/m4-"
version ".tar.xz"))
+ (patches (search-patches "m4-gnulib-libio.patch"))
(sha256
(base32
"01sfjd5a4waqw83bibvmn522g69qfqvwig9i2qlgy154l1nfihgj"))))
diff --git a/gnu/packages/make-bootstrap.scm b/gnu/packages/make-bootstrap.scm
index 475749bbf6..65d632f64e 100644
--- a/gnu/packages/make-bootstrap.scm
+++ b/gnu/packages/make-bootstrap.scm
@@ -22,7 +22,7 @@
(define-module (gnu packages make-bootstrap)
#:use-module (guix utils)
#:use-module (guix packages)
- #:use-module (guix licenses)
+ #:use-module ((guix licenses) #:select (gpl3+))
#:use-module (guix build-system trivial)
#:use-module (guix build-system gnu)
#:use-module ((gnu packages) #:select (search-patch))
@@ -34,6 +34,7 @@
#:use-module (gnu packages gcc)
#:use-module (gnu packages guile)
#:use-module (gnu packages bdw-gc)
+ #:use-module (gnu packages libunistring)
#:use-module (gnu packages linux)
#:use-module (gnu packages hurd)
#:use-module (gnu packages multiprecision)
@@ -440,6 +441,9 @@ for `sh' in $PATH, and without nscd, and with static NSS modules."
"^gnu-user.*\\.h$"))
((" -lgcc_s}}") "}}"))
#t)))))))
+ (inputs
+ `(("zlib:static" ,zlib "static")
+ ,@(package-inputs gcc)))
(native-inputs
(if (%current-target-system)
`(;; When doing a Canadian cross, we need GMP/MPFR/MPC both
@@ -525,6 +529,10 @@ for `sh' in $PATH, and without nscd, and with static NSS modules."
;; Remove the 'debug' output (see above for the reason.)
(outputs (delete "debug" (package-outputs guile-2.2)))
+ (inputs
+ `(("libunistring:static" ,libunistring "static")
+ ,@(package-inputs guile-2.2)))
+
(propagated-inputs
`(("bdw-gc" ,libgc)
,@(alist-delete "bdw-gc"
diff --git a/gnu/packages/nettle.scm b/gnu/packages/nettle.scm
index 67a3062a5a..1212f32812 100644
--- a/gnu/packages/nettle.scm
+++ b/gnu/packages/nettle.scm
@@ -44,8 +44,22 @@
;; $libdir, which is not the case by default. Work around it.
'(#:configure-flags (list (string-append "LDFLAGS=-Wl,-rpath="
(assoc-ref %outputs "out")
- "/lib"))))
- (outputs '("out" "debug"))
+ "/lib"))
+ #:phases (modify-phases %standard-phases
+ (add-after 'install 'move-static-libraries
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out"))
+ (slib (string-append (assoc-ref outputs "static")
+ "/lib")))
+ (mkdir-p slib)
+ (with-directory-excursion (string-append out "/lib")
+ (for-each (lambda (ar)
+ (rename-file ar (string-append
+ slib "/"
+ (basename ar))))
+ (find-files "." "\\.a$")))
+ #t))))))
+ (outputs '("out" "debug" "static"))
(native-inputs `(("m4" ,m4)))
(propagated-inputs `(("gmp" ,gmp)))
(home-page "https://www.lysator.liu.se/~nisse/nettle/")
diff --git a/gnu/packages/openldap.scm b/gnu/packages/openldap.scm
index 12964e302a..1cdce999b3 100644
--- a/gnu/packages/openldap.scm
+++ b/gnu/packages/openldap.scm
@@ -84,11 +84,9 @@
(native-inputs `(("libtool" ,libtool)))
(arguments
`(#:tests? #f
+ #:configure-flags '("--disable-static")
#:phases
(modify-phases %standard-phases
- (add-after 'configure 'provide-libtool
- (lambda _ (copy-file (which "libtool") "libtool")
- #t))
(add-after 'install 'patch-sasl-path
;; Give -L arguments for cyrus-sasl to avoid propagation.
(lambda* (#:key inputs outputs #:allow-other-keys)
diff --git a/gnu/packages/openstack.scm b/gnu/packages/openstack.scm
index 64e05c4b0e..c07f011c9d 100644
--- a/gnu/packages/openstack.scm
+++ b/gnu/packages/openstack.scm
@@ -182,7 +182,7 @@ guidelines}.")
("python-pbr" ,python-pbr)))
(native-inputs
`(("python-openstackdocstheme" ,python-openstackdocstheme)
- ("python-sphinx" ,python-sphinx-1.6)
+ ("python-sphinx" ,python-sphinx)
("python-subunit" ,python-subunit)
("python-testrepository" ,python-testrepository)
("python-testtools" ,python-testtools)))
@@ -216,7 +216,7 @@ with mox as possible, but small enhancements have been made.")
`(("python-dulwich" ,python-dulwich)
("python-pbr" ,python-pbr)))
(native-inputs
- `(("python-sphinx" ,python-sphinx-1.6)))
+ `(("python-sphinx" ,python-sphinx)))
(home-page "https://docs.openstack.org/openstackdocstheme/latest/")
(synopsis "OpenStack Docs Theme")
(description
@@ -313,7 +313,7 @@ to docs.openstack.org and developer.openstack.org.")
("python-six" ,python-six)))
(native-inputs
`(("python-mock" ,python-mock)
- ("python-sphinx" ,python-sphinx-1.6)
+ ("python-sphinx" ,python-sphinx)
("python-testrepository" ,python-testrepository)))
(home-page "https://github.com/dreamhost/stevedore")
(synopsis "Manage dynamic plugins for Python applications")
@@ -405,7 +405,7 @@ common features used in Tempest.")
("python-openstackdocstheme" ,python-openstackdocstheme)
("python-oslotest" ,python-oslotest)
("python-reno" ,python-reno)
- ("python-sphinx" ,python-sphinx-1.6)
+ ("python-sphinx" ,python-sphinx)
("python-testrepository" ,python-testrepository)
("python-testscenarios" ,python-testscenarios)
("python-testtools" ,python-testtools)))
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 78db0abfa8..6c3d245058 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -264,9 +264,7 @@
("sqlite" ,sqlite)
("libgcrypt" ,libgcrypt)
- ;; Use 2.2.4 to avoid various thread-safety issues while building
- ;; code in parallel.
- ("guile" ,guile-2.2.4)
+ ("guile" ,guile-2.2)
;; Many tests rely on the 'guile-bootstrap' package, which is why we
;; have it here.
diff --git a/gnu/packages/patches/binutils-aarch64-symbol-relocation.patch b/gnu/packages/patches/binutils-aarch64-symbol-relocation.patch
deleted file mode 100644
index fbd596862b..0000000000
--- a/gnu/packages/patches/binutils-aarch64-symbol-relocation.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-Fix a regression in Binutils 2.30 where some symbols are incorrectly assumed
-to be addresses:
-
-https://sourceware.org/bugzilla/show_bug.cgi?id=22764
-
-Patch taken from upstream (with ChangeLog entries and tests omitted):
-
-https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;a=commitdiff;h=279b2f94168ee91e02ccd070d27c983fc001fe12
-
-diff --git a/bfd/elfnn-aarch64.c b/bfd/elfnn-aarch64.c
-index af448f9..2737773 100644
---- a/bfd/elfnn-aarch64.c
-+++ b/bfd/elfnn-aarch64.c
-@@ -7189,10 +7189,19 @@ elfNN_aarch64_check_relocs (bfd *abfd, struct bfd_link_info *info,
- #if ARCH_SIZE == 64
- case BFD_RELOC_AARCH64_32:
- #endif
-- if (bfd_link_pic (info)
-- && (sec->flags & SEC_ALLOC) != 0
-- && (sec->flags & SEC_READONLY) != 0)
-+ if (bfd_link_pic (info) && (sec->flags & SEC_ALLOC) != 0)
- {
-+ if (h != NULL
-+ /* This is an absolute symbol. It represents a value instead
-+ of an address. */
-+ && ((h->root.type == bfd_link_hash_defined
-+ && bfd_is_abs_section (h->root.u.def.section))
-+ /* This is an undefined symbol. */
-+ || h->root.type == bfd_link_hash_undefined))
-+ break;
-+
-+ /* For local symbols, defined global symbols in a non-ABS section,
-+ it is assumed that the value is an address. */
- int howto_index = bfd_r_type - BFD_RELOC_AARCH64_RELOC_START;
- _bfd_error_handler
- /* xgettext:c-format */
diff --git a/gnu/packages/patches/doxygen-gcc-ice.patch b/gnu/packages/patches/doxygen-gcc-ice.patch
deleted file mode 100644
index fbfedcb7ab..0000000000
--- a/gnu/packages/patches/doxygen-gcc-ice.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-Work around this GCC ICE: <https://bugs.gnu.org/31708>. It shows up
-only when doing native compiles on armhf-linux.
-
-Yes it's a terrible patch, but it does the job.
-
---- doxygen-1.8.13/qtools/qutfcodec.cpp 1970-01-01 01:00:00.000000000 +0100
-+++ doxygen-1.8.13/qtools/qutfcodec.cpp 2018-06-08 14:14:29.614009929 +0200
-@@ -189,7 +189,7 @@ int QUtf16Codec::heuristicContentMatch(c
- }
-
-
--
-+volatile const void *bomPointer = &QChar::byteOrderMark;
-
- class QUtf16Encoder : public QTextEncoder {
- bool headerdone;
-@@ -209,7 +209,7 @@ public:
- headerdone = TRUE;
- len_in_out = (1+uc.length())*(int)sizeof(QChar);
- QCString d(len_in_out);
-- memcpy(d.rawData(),&QChar::byteOrderMark,sizeof(QChar));
-+ memcpy(d.rawData(),(void *)bomPointer,sizeof(QChar));
- memcpy(d.rawData()+sizeof(QChar),uc.unicode(),uc.length()*sizeof(QChar));
- return d;
- }
diff --git a/gnu/packages/patches/findutils-gnulib-libio.patch b/gnu/packages/patches/findutils-gnulib-libio.patch
new file mode 100644
index 0000000000..79f9fd914d
--- /dev/null
+++ b/gnu/packages/patches/findutils-gnulib-libio.patch
@@ -0,0 +1,114 @@
+Adjust to removal of libio interface in glibc 2.28.
+
+Based on this gnulib commit:
+https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4af4a4a71827c0bc5e0ec67af23edef4f15cee8e
+
+diff --git a/gl/lib/fflush.c b/gl/lib/fflush.c
+index 5ae3e41..7a82470 100644
+--- a/gl/lib/fflush.c
++++ b/gl/lib/fflush.c
+@@ -33,7 +33,7 @@
+ #undef fflush
+
+
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+
+ /* Clear the stream's ungetc buffer, preserving the value of ftello (fp). */
+ static void
+@@ -72,7 +72,7 @@ clear_ungetc_buffer (FILE *fp)
+
+ #endif
+
+-#if ! (defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */)
++#if ! (defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */)
+
+ # if (defined __sferror || defined __DragonFly__ || defined __ANDROID__) && defined __SNPT
+ /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Android */
+@@ -148,7 +148,7 @@ rpl_fflush (FILE *stream)
+ if (stream == NULL || ! freading (stream))
+ return fflush (stream);
+
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+
+ clear_ungetc_buffer_preserving_position (stream);
+
+diff --git a/gl/lib/fpurge.c b/gl/lib/fpurge.c
+index f313b22..ecdf82d 100644
+--- a/gl/lib/fpurge.c
++++ b/gl/lib/fpurge.c
+@@ -62,7 +62,7 @@ fpurge (FILE *fp)
+ /* Most systems provide FILE as a struct and the necessary bitmask in
+ <stdio.h>, because they need it for implementing getc() and putc() as
+ fast macros. */
+-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ fp->_IO_read_end = fp->_IO_read_ptr;
+ fp->_IO_write_ptr = fp->_IO_write_base;
+ /* Avoid memory leak when there is an active ungetc buffer. */
+diff --git a/gl/lib/freadahead.c b/gl/lib/freadahead.c
+index 094daab..3f8101e 100644
+--- a/gl/lib/freadahead.c
++++ b/gl/lib/freadahead.c
+@@ -25,7 +25,7 @@
+ size_t
+ freadahead (FILE *fp)
+ {
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ if (fp->_IO_write_ptr > fp->_IO_write_base)
+ return 0;
+ return (fp->_IO_read_end - fp->_IO_read_ptr)
+diff --git a/gl/lib/freading.c b/gl/lib/freading.c
+index 0512b19..8c48fe4 100644
+--- a/gl/lib/freading.c
++++ b/gl/lib/freading.c
+@@ -31,7 +31,7 @@ freading (FILE *fp)
+ /* Most systems provide FILE as a struct and the necessary bitmask in
+ <stdio.h>, because they need it for implementing getc() and putc() as
+ fast macros. */
+-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ return ((fp->_flags & _IO_NO_WRITES) != 0
+ || ((fp->_flags & (_IO_NO_READS | _IO_CURRENTLY_PUTTING)) == 0
+ && fp->_IO_read_base != NULL));
+diff --git a/gl/lib/fseeko.c b/gl/lib/fseeko.c
+index 1c65d2a..9026408 100644
+--- a/gl/lib/fseeko.c
++++ b/gl/lib/fseeko.c
+@@ -47,7 +47,7 @@ fseeko (FILE *fp, off_t offset, int whence)
+ #endif
+
+ /* These tests are based on fpurge.c. */
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ if (fp->_IO_read_end == fp->_IO_read_ptr
+ && fp->_IO_write_ptr == fp->_IO_write_base
+ && fp->_IO_save_base == NULL)
+@@ -123,7 +123,7 @@ fseeko (FILE *fp, off_t offset, int whence)
+ return -1;
+ }
+
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ fp->_flags &= ~_IO_EOF_SEEN;
+ fp->_offset = pos;
+ #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__
+diff --git a/gl/lib/stdio-impl.h b/gl/lib/stdio-impl.h
+index 502d891..ea38ee2 100644
+--- a/gl/lib/stdio-impl.h
++++ b/gl/lib/stdio-impl.h
+@@ -18,6 +18,12 @@
+ the same implementation of stdio extension API, except that some fields
+ have different naming conventions, or their access requires some casts. */
+
++/* Glibc 2.28 made _IO_IN_BACKUP private. For now, work around this
++ problem by defining it ourselves. FIXME: Do not rely on glibc
++ internals. */
++#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN
++# define _IO_IN_BACKUP 0x100
++#endif
+
+ /* BSD stdio derived implementations. */
+
diff --git a/gnu/packages/patches/findutils-makedev.patch b/gnu/packages/patches/findutils-makedev.patch
new file mode 100644
index 0000000000..2f16c625d8
--- /dev/null
+++ b/gnu/packages/patches/findutils-makedev.patch
@@ -0,0 +1,22 @@
+Include <sys/sysmacros.h> for "makedev".
+
+Taken from this gnulib commit:
+https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4da63c5881f60f71999a943612da9112232b9161
+
+diff --git a/gl/lib/mountlist.c b/gl/lib/mountlist.c
+index bb4e4ee21..cf4020e2a 100644
+--- a/gl/lib/mountlist.c
++++ b/gl/lib/mountlist.c
+@@ -37,6 +37,12 @@
+ # include <sys/param.h>
+ #endif
+
++#if MAJOR_IN_MKDEV
++# include <sys/mkdev.h>
++#elif MAJOR_IN_SYSMACROS
++# include <sys/sysmacros.h>
++#endif
++
+ #if defined MOUNTED_GETFSSTAT /* OSF_1 and Darwin1.3.x */
+ # if HAVE_SYS_UCRED_H
+ # include <grp.h> /* needed on OSF V4.0 for definition of NGROUPS,
diff --git a/gnu/packages/patches/freetype-CVE-2018-6942.patch b/gnu/packages/patches/freetype-CVE-2018-6942.patch
deleted file mode 100644
index 680f357765..0000000000
--- a/gnu/packages/patches/freetype-CVE-2018-6942.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-Fix CVE-2018-6942:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-6942
-https://people.canonical.com/~ubuntu-security/cve/2018/CVE-2018-6942.html
-
-Copied from upstream (ChangeLog section removed):
-https://git.savannah.gnu.org/cgit/freetype/freetype2.git/commit/?id=29c759284e305ec428703c9a5831d0b1fc3497ef
-
-diff --git a/src/truetype/ttinterp.c b/src/truetype/ttinterp.c
-index d855aaa..551f14a 100644
---- a/src/truetype/ttinterp.c
-+++ b/src/truetype/ttinterp.c
-@@ -7532,8 +7532,16 @@
- return;
- }
-
-- for ( i = 0; i < num_axes; i++ )
-- args[i] = coords[i] >> 2; /* convert 16.16 to 2.14 format */
-+ if ( coords )
-+ {
-+ for ( i = 0; i < num_axes; i++ )
-+ args[i] = coords[i] >> 2; /* convert 16.16 to 2.14 format */
-+ }
-+ else
-+ {
-+ for ( i = 0; i < num_axes; i++ )
-+ args[i] = 0;
-+ }
- }
-
-
diff --git a/gnu/packages/patches/gcc-libsanitizer-ustat.patch b/gnu/packages/patches/gcc-libsanitizer-ustat.patch
new file mode 100644
index 0000000000..a4e0c6affa
--- /dev/null
+++ b/gnu/packages/patches/gcc-libsanitizer-ustat.patch
@@ -0,0 +1,41 @@
+Remove use of deprecated ustat interface in glibc 2.28:
+
+https://gcc.gnu.org/bugzilla/show_bug.cgi?id=85835
+
+Taken from upstream:
+
+https://gcc.gnu.org/viewcvs/gcc?view=revision&revision=260684
+
+diff --git a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
+index 858bb2184505..de18e56d11cf 100644
+--- a/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
++++ b/libsanitizer/sanitizer_common/sanitizer_platform_limits_posix.cc
+@@ -157,7 +157,6 @@ typedef struct user_fpregs elf_fpregset_t;
+ # include <sys/procfs.h>
+ #endif
+ #include <sys/user.h>
+-#include <sys/ustat.h>
+ #include <linux/cyclades.h>
+ #include <linux/if_eql.h>
+ #include <linux/if_plip.h>
+@@ -250,7 +249,19 @@ namespace __sanitizer {
+ #endif // SANITIZER_LINUX || SANITIZER_FREEBSD
+
+ #if SANITIZER_LINUX && !SANITIZER_ANDROID
+- unsigned struct_ustat_sz = sizeof(struct ustat);
++ // Use pre-computed size of struct ustat to avoid <sys/ustat.h> which
++ // has been removed from glibc 2.28.
++#if defined(__aarch64__) || defined(__s390x__) || defined (__mips64) \
++ || defined(__powerpc64__) || defined(__arch64__) || defined(__sparcv9) \
++ || defined(__x86_64__)
++#define SIZEOF_STRUCT_USTAT 32
++#elif defined(__arm__) || defined(__i386__) || defined(__mips__) \
++ || defined(__powerpc__) || defined(__s390__)
++#define SIZEOF_STRUCT_USTAT 20
++#else
++#error Unknown size of struct ustat
++#endif
++ unsigned struct_ustat_sz = SIZEOF_STRUCT_USTAT;
+ unsigned struct_rlimit64_sz = sizeof(struct rlimit64);
+ unsigned struct_statvfs64_sz = sizeof(struct statvfs64);
+ #endif // SANITIZER_LINUX && !SANITIZER_ANDROID
diff --git a/gnu/packages/patches/gcc-strmov-store-file-names.patch b/gnu/packages/patches/gcc-strmov-store-file-names.patch
index 9f9162855d..7358de3326 100644
--- a/gnu/packages/patches/gcc-strmov-store-file-names.patch
+++ b/gnu/packages/patches/gcc-strmov-store-file-names.patch
@@ -15,7 +15,7 @@ and <https://bugs.gnu.org/30395>.
--- gcc-5.3.0/gcc/builtins.c 2016-10-18 10:50:46.080616285 +0200
+++ gcc-5.3.0/gcc/builtins.c 2016-11-09 15:26:43.693042737 +0100
-@@ -3192,6 +3192,54 @@ determine_block_size (tree len, rtx len_
+@@ -3192,6 +3192,58 @@ determine_block_size (tree len, rtx len_
GET_MODE_MASK (GET_MODE (len_rtx)));
}
@@ -35,9 +35,13 @@ and <https://bugs.gnu.org/30395>.
+ if (TREE_CODE (str) == VAR_DECL
+ && TREE_STATIC (str)
+ && TREE_READONLY (str))
-+ /* STR may be a 'static const' variable whose initial value
-+ is a string constant. See <https://bugs.gnu.org/30395>. */
-+ str = DECL_INITIAL (str);
++ {
++ /* STR may be a 'static const' variable whose initial value
++ is a string constant. See <https://bugs.gnu.org/30395>. */
++ str = DECL_INITIAL (str);
++ if (str == NULL_TREE)
++ return false;
++ }
+
+ if (TREE_CODE (str) != STRING_CST)
+ return false;
diff --git a/gnu/packages/patches/gdb-python-3.7.patch b/gnu/packages/patches/gdb-python-3.7.patch
new file mode 100644
index 0000000000..c51442c8b2
--- /dev/null
+++ b/gnu/packages/patches/gdb-python-3.7.patch
@@ -0,0 +1,52 @@
+Fix build failure with Python 3.7 and newer.
+
+Taken from this upstream commit, sans ChangeLog update:
+
+https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;a=commitdiff;h=aeab512851bf6ed623d1c6c4305b6ce05e51a10c
+
+diff --git a/gdb/python/python.c b/gdb/python/python.c
+index 1805c90..20fc674 100644
+--- a/gdb/python/python.c
++++ b/gdb/python/python.c
+@@ -1667,6 +1667,17 @@ finalize_python (void *ignore)
+ restore_active_ext_lang (previous_active);
+ }
+
++#ifdef IS_PY3K
++/* This is called via the PyImport_AppendInittab mechanism called
++ during initialization, to make the built-in _gdb module known to
++ Python. */
++PyMODINIT_FUNC
++init__gdb_module (void)
++{
++ return PyModule_Create (&python_GdbModuleDef);
++}
++#endif
++
+ static bool
+ do_start_initialization ()
+ {
+@@ -1707,6 +1718,9 @@ do_start_initialization ()
+ remain alive for the duration of the program's execution, so
+ it is not freed after this call. */
+ Py_SetProgramName (progname_copy);
++
++ /* Define _gdb as a built-in module. */
++ PyImport_AppendInittab ("_gdb", init__gdb_module);
+ #else
+ Py_SetProgramName (progname.release ());
+ #endif
+@@ -1716,9 +1730,7 @@ do_start_initialization ()
+ PyEval_InitThreads ();
+
+ #ifdef IS_PY3K
+- gdb_module = PyModule_Create (&python_GdbModuleDef);
+- /* Add _gdb module to the list of known built-in modules. */
+- _PyImport_FixupBuiltin (gdb_module, "_gdb");
++ gdb_module = PyImport_ImportModule ("_gdb");
+ #else
+ gdb_module = Py_InitModule ("_gdb", python_GdbMethods);
+ #endif
+--
+2.9.3
+
diff --git a/gnu/packages/patches/glibc-2.28-git-fixes.patch b/gnu/packages/patches/glibc-2.28-git-fixes.patch
new file mode 100644
index 0000000000..7e370ef0b1
--- /dev/null
+++ b/gnu/packages/patches/glibc-2.28-git-fixes.patch
@@ -0,0 +1,248 @@
+This file contains fixes from the "release/2.28/master" branch:
+https://sourceware.org/git/?p=glibc.git;a=shortlog;h=refs/heads/release/2.28/master
+
+Currently we have these commits (sans tests and ChangeLog updates):
+7f11842e7483da7aa9fa3031be122021978ef600
+726e1554ce4db5e35af41cb0110c54c5e1232054
+4b25485f03158959cff45379eecc1d73c7dcdd11
+d05b05d1570ba3ae354a2f5a3cfeefb373b09979
+bfcfa22589f2b4277a65e60c6b736b6bbfbd87d0
+2f498f3d140ab5152bd784df2be7af7d9c5e63ed
+
+diff --git a/htl/Versions b/htl/Versions
+index 6a63a1b8a1..c5a616da10 100644
+--- a/htl/Versions
++++ b/htl/Versions
+@@ -150,6 +150,8 @@ libpthread {
+ __cthread_keycreate;
+ __cthread_getspecific;
+ __cthread_setspecific;
++ __pthread_getspecific;
++ __pthread_setspecific;
+ __pthread_getattr_np;
+ __pthread_attr_getstack;
+ }
+
+diff --git a/sysdeps/htl/pt-getspecific.c b/sysdeps/htl/pt-getspecific.c
+index a0227a67f6..64ddf9551a 100644
+--- a/sysdeps/htl/pt-getspecific.c
++++ b/sysdeps/htl/pt-getspecific.c
+@@ -36,3 +36,4 @@ __pthread_getspecific (pthread_key_t key)
+ return self->thread_specifics[key];
+ }
+ strong_alias (__pthread_getspecific, pthread_getspecific);
++hidden_def (__pthread_getspecific)
+diff --git a/sysdeps/htl/pt-setspecific.c b/sysdeps/htl/pt-setspecific.c
+index a46a12f157..02aff417ef 100644
+--- a/sysdeps/htl/pt-setspecific.c
++++ b/sysdeps/htl/pt-setspecific.c
+@@ -48,3 +48,4 @@ __pthread_setspecific (pthread_key_t key, const void *value)
+ return 0;
+ }
+ strong_alias (__pthread_setspecific, pthread_setspecific);
++hidden_def (__pthread_setspecific)
+diff --git a/sysdeps/htl/pthreadP.h b/sysdeps/htl/pthreadP.h
+index 132ac1718e..71c2fcd9c6 100644
+--- a/sysdeps/htl/pthreadP.h
++++ b/sysdeps/htl/pthreadP.h
+@@ -68,6 +68,8 @@ struct __pthread_cancelation_handler **___pthread_get_cleanup_stack (void) attri
+
+ #if IS_IN (libpthread)
+ hidden_proto (__pthread_key_create)
++hidden_proto (__pthread_getspecific)
++hidden_proto (__pthread_setspecific)
+ hidden_proto (_pthread_mutex_init)
+ #endif
+
+diff --git a/sysdeps/unix/sysv/linux/getdents64.c b/sysdeps/unix/sysv/linux/getdents64.c
+index 3bde0cf4f0..bc140b5a7f 100644
+--- a/sysdeps/unix/sysv/linux/getdents64.c
++++ b/sysdeps/unix/sysv/linux/getdents64.c
+@@ -33,41 +33,80 @@ strong_alias (__getdents64, __getdents)
+ # include <shlib-compat.h>
+
+ # if SHLIB_COMPAT(libc, GLIBC_2_1, GLIBC_2_2)
+-# include <olddirent.h>
++# include <olddirent.h>
++# include <unistd.h>
+
+-/* kernel definition of as of 3.2. */
+-struct compat_linux_dirent
++static ssize_t
++handle_overflow (int fd, __off64_t offset, ssize_t count)
+ {
+- /* Both d_ino and d_off are compat_ulong_t which are defined in all
+- architectures as 'u32'. */
+- uint32_t d_ino;
+- uint32_t d_off;
+- unsigned short d_reclen;
+- char d_name[1];
+-};
++ /* If this is the first entry in the buffer, we can report the
++ error. */
++ if (count == 0)
++ {
++ __set_errno (EOVERFLOW);
++ return -1;
++ }
++
++ /* Otherwise, seek to the overflowing entry, so that the next call
++ will report the error, and return the data read so far.. */
++ if (__lseek64 (fd, offset, SEEK_SET) != 0)
++ return -1;
++ return count;
++}
+
+ ssize_t
+ __old_getdents64 (int fd, char *buf, size_t nbytes)
+ {
+- ssize_t retval = INLINE_SYSCALL_CALL (getdents, fd, buf, nbytes);
++ /* We do not move the individual directory entries. This is only
++ possible if the target type (struct __old_dirent64) is smaller
++ than the source type. */
++ _Static_assert (offsetof (struct __old_dirent64, d_name)
++ <= offsetof (struct dirent64, d_name),
++ "__old_dirent64 is larger than dirent64");
++ _Static_assert (__alignof__ (struct __old_dirent64)
++ <= __alignof__ (struct dirent64),
++ "alignment of __old_dirent64 is larger than dirent64");
+
+- /* The kernel added the d_type value after the name. Change this now. */
+- if (retval != -1)
++ ssize_t retval = INLINE_SYSCALL_CALL (getdents64, fd, buf, nbytes);
++ if (retval > 0)
+ {
+- union
+- {
+- struct compat_linux_dirent k;
+- struct dirent u;
+- } *kbuf = (void *) buf;
+-
+- while ((char *) kbuf < buf + retval)
++ char *p = buf;
++ char *end = buf + retval;
++ while (p < end)
+ {
+- char d_type = *((char *) kbuf + kbuf->k.d_reclen - 1);
+- memmove (kbuf->u.d_name, kbuf->k.d_name,
+- strlen (kbuf->k.d_name) + 1);
+- kbuf->u.d_type = d_type;
++ struct dirent64 *source = (struct dirent64 *) p;
++
++ /* Copy out the fixed-size data. */
++ __ino_t ino = source->d_ino;
++ __off64_t offset = source->d_off;
++ unsigned int reclen = source->d_reclen;
++ unsigned char type = source->d_type;
++
++ /* Check for ino_t overflow. */
++ if (__glibc_unlikely (ino != source->d_ino))
++ return handle_overflow (fd, offset, p - buf);
++
++ /* Convert to the target layout. Use a separate struct and
++ memcpy to side-step aliasing issues. */
++ struct __old_dirent64 result;
++ result.d_ino = ino;
++ result.d_off = offset;
++ result.d_reclen = reclen;
++ result.d_type = type;
++
++ /* Write the fixed-sized part of the result to the
++ buffer. */
++ size_t result_name_offset = offsetof (struct __old_dirent64, d_name);
++ memcpy (p, &result, result_name_offset);
++
++ /* Adjust the position of the name if necessary. Copy
++ everything until the end of the record, including the
++ terminating NUL byte. */
++ if (result_name_offset != offsetof (struct dirent64, d_name))
++ memmove (p + result_name_offset, source->d_name,
++ reclen - offsetof (struct dirent64, d_name));
+
+- kbuf = (void *) ((char *) kbuf + kbuf->k.d_reclen);
++ p += reclen;
+ }
+ }
+ return retval;
+
+diff --git a/misc/error.c b/misc/error.c
+index b4e8b6c938..03378e2f2a 100644
+--- a/misc/error.c
++++ b/misc/error.c
+@@ -319,6 +319,7 @@ error (int status, int errnum, const char *message, ...)
+
+ va_start (args, message);
+ error_tail (status, errnum, message, args);
++ va_end (args);
+
+ #ifdef _LIBC
+ _IO_funlockfile (stderr);
+@@ -390,6 +391,7 @@ error_at_line (int status, int errnum, const char *file_name,
+
+ va_start (args, message);
+ error_tail (status, errnum, message, args);
++ va_end (args);
+
+ #ifdef _LIBC
+ _IO_funlockfile (stderr);
+
+diff --git a/nscd/nscd_conf.c b/nscd/nscd_conf.c
+index 265a02434d..7293b795b6 100644
+--- a/nscd/nscd_conf.c
++++ b/nscd/nscd_conf.c
+@@ -190,7 +190,10 @@ nscd_parse_file (const char *fname, struct database_dyn dbs[lastdb])
+ if (!arg1)
+ error (0, 0, _("Must specify user name for server-user option"));
+ else
+- server_user = xstrdup (arg1);
++ {
++ free ((char *) server_user);
++ server_user = xstrdup (arg1);
++ }
+ }
+ else if (strcmp (entry, "stat-user") == 0)
+ {
+@@ -198,6 +201,7 @@ nscd_parse_file (const char *fname, struct database_dyn dbs[lastdb])
+ error (0, 0, _("Must specify user name for stat-user option"));
+ else
+ {
++ free ((char *) stat_user);
+ stat_user = xstrdup (arg1);
+
+ struct passwd *pw = getpwnam (stat_user);
+
+diff --git a/nss/nss_files/files-alias.c b/nss/nss_files/files-alias.c
+index cfd34b66b9..35b0bfc5d2 100644
+--- a/nss/nss_files/files-alias.c
++++ b/nss/nss_files/files-alias.c
+@@ -221,6 +221,13 @@ get_next_alias (FILE *stream, const char *match, struct aliasent *result,
+ {
+ while (! feof_unlocked (listfile))
+ {
++ if (room_left < 2)
++ {
++ free (old_line);
++ fclose (listfile);
++ goto no_more_room;
++ }
++
+ first_unused[room_left - 1] = '\xff';
+ line = fgets_unlocked (first_unused, room_left,
+ listfile);
+@@ -229,6 +236,7 @@ get_next_alias (FILE *stream, const char *match, struct aliasent *result,
+ if (first_unused[room_left - 1] != '\xff')
+ {
+ free (old_line);
++ fclose (listfile);
+ goto no_more_room;
+ }
+
+@@ -256,6 +264,7 @@ get_next_alias (FILE *stream, const char *match, struct aliasent *result,
+ + __alignof__ (char *)))
+ {
+ free (old_line);
++ fclose (listfile);
+ goto no_more_room;
+ }
+ room_left -= ((first_unused - cp)
+
diff --git a/gnu/packages/patches/jemalloc-arm-address-bits.patch b/gnu/packages/patches/jemalloc-arm-address-bits.patch
deleted file mode 100644
index f2ef24c25a..0000000000
--- a/gnu/packages/patches/jemalloc-arm-address-bits.patch
+++ /dev/null
@@ -1,39 +0,0 @@
-From 8cfc9dec37b312a2686f602bbcdd102ca07cca99 Mon Sep 17 00:00:00 2001
-From: David Goldblatt <davidgoldblatt@fb.com>
-Date: Fri, 29 Sep 2017 13:54:08 -0700
-Subject: [PATCH] ARM: Don't extend bit LG_VADDR to compute high address bits.
-
-In userspace ARM on Linux, zero-ing the high bits is the correct way to do this.
-This doesn't fix the fact that we currently set LG_VADDR to 48 on ARM, when in
-fact larger virtual address sizes are coming soon. We'll cross that bridge when
-we come to it.
----
- include/jemalloc/internal/rtree.h | 12 ++++++++++++
- 1 file changed, 12 insertions(+)
-
-diff --git a/include/jemalloc/internal/rtree.h b/include/jemalloc/internal/rtree.h
-index b5d4db39..4563db23 100644
---- a/include/jemalloc/internal/rtree.h
-+++ b/include/jemalloc/internal/rtree.h
-@@ -178,9 +178,21 @@ rtree_leaf_elm_bits_read(tsdn_t *tsdn, rtree_t *rtree, rtree_leaf_elm_t *elm,
-
- JEMALLOC_ALWAYS_INLINE extent_t *
- rtree_leaf_elm_bits_extent_get(uintptr_t bits) {
-+# ifdef __aarch64__
-+ /*
-+ * aarch64 doesn't sign extend the highest virtual address bit to set
-+ * the higher ones. Instead, the high bits gets zeroed.
-+ */
-+ uintptr_t high_bit_mask = ((uintptr_t)1 << LG_VADDR) - 1;
-+ /* Mask off the slab bit. */
-+ uintptr_t low_bit_mask = ~(uintptr_t)1;
-+ uintptr_t mask = high_bit_mask & low_bit_mask;
-+ return (extent_t *)(bits & mask);
-+# else
- /* Restore sign-extended high bits, mask slab bit. */
- return (extent_t *)((uintptr_t)((intptr_t)(bits << RTREE_NHIB) >>
- RTREE_NHIB) & ~((uintptr_t)0x1));
-+# endif
- }
-
- JEMALLOC_ALWAYS_INLINE szind_t
diff --git a/gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch b/gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch
new file mode 100644
index 0000000000..3056f0baad
--- /dev/null
+++ b/gnu/packages/patches/libgcrypt-make-yat2m-reproducible.patch
@@ -0,0 +1,32 @@
+Make yat2m in libgcrypt respect SOURCE_DATE_EPOCH, making
+the build reproducible.
+
+This was already fixed upstream in GnuPG:
+https://dev.gnupg.org/rG139de02b93773615bdd95e04a7f0c1ad73b4f6fb
+
+and in libgpg-error:
+https://dev.gnupg.org/rE5494a5728418938d2e42158bb646b07124184e64
+
+
+--- a/doc/yat2m.c 2017-11-23 19:16:58.000000000 +0100
++++ b/doc/yat2m.c 2017-08-28 12:22:54.000000000 +0200
+@@ -1475,6 +1484,7 @@
+ main (int argc, char **argv)
+ {
+ int last_argc = -1;
++ const char *s;
+
+ opt_source = "GNU";
+ opt_release = "";
+@@ -1608,6 +1618,11 @@
+ if (argc > 1)
+ die ("usage: " PGM " [OPTION] [FILE] (try --help for more information)\n");
+
++ /* Take care of supplied timestamp for reproducible builds. See
++ * https://reproducible-builds.org/specs/source-date-epoch/ */
++ if (!opt_date && (s = getenv ("SOURCE_DATE_EPOCH")) && *s)
++ opt_date = s;
++
+ /* Start processing. */
+ if (argc && strcmp (*argv, "-"))
+ {
diff --git a/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch b/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch
deleted file mode 100644
index d848d639b2..0000000000
--- a/gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch
+++ /dev/null
@@ -1,58 +0,0 @@
-https://git.gnupg.org/cgi-bin/gitweb.cgi?p=libgpg-error.git;a=patch;h=791177de023574223eddf7288eb7c5a0721ac623
-
-From 791177de023574223eddf7288eb7c5a0721ac623 Mon Sep 17 00:00:00 2001
-From: Werner Koch <wk@gnupg.org>
-Date: Sun, 18 Mar 2018 17:39:43 +0100
-Subject: [PATCH] core: Fix regression on arm64 due to invalid use of va_list.
-
-* src/logging.c (_gpgrt_log_printhex): Provide a dummy arg instead of
-NULL.
---
-
-Fix
-Suggested-by: Jakub Wilk <jwilk@jwilk.net>
-
-Signed-off-by: Werner Koch <wk@gnupg.org>
----
- src/logging.c | 18 ++++++++++++++----
- 1 file changed, 14 insertions(+), 4 deletions(-)
-
-diff --git a/src/logging.c b/src/logging.c
-index 1a4f620..d01f974 100644
---- a/src/logging.c
-+++ b/src/logging.c
-@@ -1090,9 +1090,10 @@ _gpgrt_log_flush (void)
-
-
- /* Print a hexdump of (BUFFER,LENGTH). With FMT passed as NULL print
-- * just the raw dump, with FMT being an empty string, print a trailing
-- * linefeed, otherwise print an entire debug line with the expanded
-- * FMT followed by a possible wrapped hexdump and a final LF. */
-+ * just the raw dump (in this case ARG_PTR is not used), with FMT
-+ * being an empty string, print a trailing linefeed, otherwise print
-+ * an entire debug line with the expanded FMT followed by a possible
-+ * wrapped hexdump and a final LF. */
- void
- _gpgrt_logv_printhex (const void *buffer, size_t length,
- const char *fmt, va_list arg_ptr)
-@@ -1150,7 +1151,16 @@ _gpgrt_log_printhex (const void *buffer, size_t length,
- va_end (arg_ptr);
- }
- else
-- _gpgrt_logv_printhex (buffer, length, NULL, NULL);
-+ {
-+ /* va_list is not necessary a pointer and thus we can't use NULL
-+ * because that would conflict with platforms using a straight
-+ * struct for it (e.g. arm64). We use a dummy variable instead;
-+ * the static is a simple way zero it out so to not get
-+ * complains about uninitialized use. */
-+ static va_list dummy_argptr;
-+
-+ _gpgrt_logv_printhex (buffer, length, NULL, dummy_argptr);
-+ }
- }
-
-
---
-2.8.0.rc3
-
diff --git a/gnu/packages/patches/m4-gnulib-libio.patch b/gnu/packages/patches/m4-gnulib-libio.patch
new file mode 100644
index 0000000000..a26622ccf3
--- /dev/null
+++ b/gnu/packages/patches/m4-gnulib-libio.patch
@@ -0,0 +1,128 @@
+Adjust the bundled gnulib to cope with removal of libio interface in
+glibc 2.28.
+
+Based on this upstream patch, without hunks that do not apply to m4:
+https://git.savannah.gnu.org/cgit/gnulib.git/commit/?id=4af4a4a71827c0bc5e0ec67af23edef4f15cee8e
+
+diff --git a/lib/fflush.c b/lib/fflush.c
+index 983ade0..a6edfa1 100644
+--- a/lib/fflush.c
++++ b/lib/fflush.c
+@@ -33,7 +33,7 @@
+ #undef fflush
+
+
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+
+ /* Clear the stream's ungetc buffer, preserving the value of ftello (fp). */
+ static void
+@@ -72,7 +72,7 @@ clear_ungetc_buffer (FILE *fp)
+
+ #endif
+
+-#if ! (defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */)
++#if ! (defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */)
+
+ # if (defined __sferror || defined __DragonFly__ || defined __ANDROID__) && defined __SNPT
+ /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Minix 3, Android */
+@@ -148,7 +148,7 @@ rpl_fflush (FILE *stream)
+ if (stream == NULL || ! freading (stream))
+ return fflush (stream);
+
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+
+ clear_ungetc_buffer_preserving_position (stream);
+
+diff --git a/lib/fpending.c b/lib/fpending.c
+index c84e3a5..789f50e 100644
+--- a/lib/fpending.c
++++ b/lib/fpending.c
+@@ -32,7 +32,7 @@ __fpending (FILE *fp)
+ /* Most systems provide FILE as a struct and the necessary bitmask in
+ <stdio.h>, because they need it for implementing getc() and putc() as
+ fast macros. */
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ return fp->_IO_write_ptr - fp->_IO_write_base;
+ #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__
+ /* FreeBSD, NetBSD, OpenBSD, DragonFly, Mac OS X, Cygwin, Minix 3, Android */
+diff --git a/lib/fpurge.c b/lib/fpurge.c
+index b1d417c..3aedcc3 100644
+--- a/lib/fpurge.c
++++ b/lib/fpurge.c
+@@ -62,7 +62,7 @@ fpurge (FILE *fp)
+ /* Most systems provide FILE as a struct and the necessary bitmask in
+ <stdio.h>, because they need it for implementing getc() and putc() as
+ fast macros. */
+-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ fp->_IO_read_end = fp->_IO_read_ptr;
+ fp->_IO_write_ptr = fp->_IO_write_base;
+ /* Avoid memory leak when there is an active ungetc buffer. */
+diff --git a/lib/freadahead.c b/lib/freadahead.c
+index c2ecb5b..23ec76e 100644
+--- a/lib/freadahead.c
++++ b/lib/freadahead.c
+@@ -30,7 +30,7 @@ extern size_t __sreadahead (FILE *);
+ size_t
+ freadahead (FILE *fp)
+ {
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ if (fp->_IO_write_ptr > fp->_IO_write_base)
+ return 0;
+ return (fp->_IO_read_end - fp->_IO_read_ptr)
+diff --git a/lib/freading.c b/lib/freading.c
+index 73c28ac..c24d0c8 100644
+--- a/lib/freading.c
++++ b/lib/freading.c
+@@ -31,7 +31,7 @@ freading (FILE *fp)
+ /* Most systems provide FILE as a struct and the necessary bitmask in
+ <stdio.h>, because they need it for implementing getc() and putc() as
+ fast macros. */
+-# if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++# if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ return ((fp->_flags & _IO_NO_WRITES) != 0
+ || ((fp->_flags & (_IO_NO_READS | _IO_CURRENTLY_PUTTING)) == 0
+ && fp->_IO_read_base != NULL));
+diff --git a/lib/fseeko.c b/lib/fseeko.c
+index 0101ab5..193f4e8 100644
+--- a/lib/fseeko.c
++++ b/lib/fseeko.c
+@@ -47,7 +47,7 @@ fseeko (FILE *fp, off_t offset, int whence)
+ #endif
+
+ /* These tests are based on fpurge.c. */
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ if (fp->_IO_read_end == fp->_IO_read_ptr
+ && fp->_IO_write_ptr == fp->_IO_write_base
+ && fp->_IO_save_base == NULL)
+@@ -123,7 +123,7 @@ fseeko (FILE *fp, off_t offset, int whence)
+ return -1;
+ }
+
+-#if defined _IO_ftrylockfile || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
++#if defined _IO_EOF_SEEN || __GNU_LIBRARY__ == 1 /* GNU libc, BeOS, Haiku, Linux libc5 */
+ fp->_flags &= ~_IO_EOF_SEEN;
+ fp->_offset = pos;
+ #elif defined __sferror || defined __DragonFly__ || defined __ANDROID__
+diff --git a/lib/stdio-impl.h b/lib/stdio-impl.h
+index 78d896e..05c5752 100644
+--- a/lib/stdio-impl.h
++++ b/lib/stdio-impl.h
+@@ -18,6 +18,12 @@
+ the same implementation of stdio extension API, except that some fields
+ have different naming conventions, or their access requires some casts. */
+
++/* Glibc 2.28 made _IO_IN_BACKUP private. For now, work around this
++ problem by defining it ourselves. FIXME: Do not rely on glibc
++ internals. */
++#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN
++# define _IO_IN_BACKUP 0x100
++#endif
+
+ /* BSD stdio derived implementations. */
+
diff --git a/gnu/packages/patches/mariadb-gcc-ice.patch b/gnu/packages/patches/mariadb-gcc-ice.patch
deleted file mode 100644
index 59b188f45a..0000000000
--- a/gnu/packages/patches/mariadb-gcc-ice.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-Work around this GCC ICE: <https://bugs.gnu.org/31708>. It shows up
-only when doing native compiles on armhf-linux.
-
---- mariadb-10.1.33/plugin/semisync/semisync_master.cc 2018-07-28 02:13:12.604020250 +0200
-+++ mariadb-10.1.33/plugin/semisync/semisync_master.cc 2018-07-28 02:14:11.907753417 +0200
-@@ -847,6 +847,8 @@
- return function_exit(kWho, 0);
- }
-
-+volatile const void *kSyncHeaderPtr = &ReplSemiSyncMaster::kSyncHeader;
-+
- int ReplSemiSyncMaster::reserveSyncHeader(unsigned char *header,
- unsigned long size)
- {
-@@ -873,7 +875,7 @@
- /* Set the magic number and the sync status. By default, no sync
- * is required.
- */
-- memcpy(header, kSyncHeader, sizeof(kSyncHeader));
-+ memcpy(header, (void *)kSyncHeaderPtr, sizeof(kSyncHeader));
- hlen= sizeof(kSyncHeader);
- }
- return function_exit(kWho, hlen);
-
diff --git a/gnu/packages/patches/meson-for-build-rpath.patch b/gnu/packages/patches/meson-for-build-rpath.patch
index 59249e294d..ef9a73f07c 100644
--- a/gnu/packages/patches/meson-for-build-rpath.patch
+++ b/gnu/packages/patches/meson-for-build-rpath.patch
@@ -2,10 +2,10 @@ This patch removes a part of meson that clears the rpath upon installation.
This will only be applied to a special version of meson, used for the
meson-build-system.
-Patch by Peter Mikkelsen <petermikkelsen10@gmail.com>
+Original patch for Meson 0.42.0 by Peter Mikkelsen <petermikkelsen10@gmail.com>
---- meson-0.42.0/mesonbuild/minstall.py.orig 2017-09-09 01:49:39.147374148 +0200
-+++ meson-0.42.0/mesonbuild/minstall.py 2017-09-09 01:51:01.209134717 +0200
+--- meson-0.47.1/mesonbuild/minstall.py.old 2018-08-10 11:01:27.812327013 +0200
++++ meson-0.47.1/mesonbuild/minstall.py 2018-08-10 11:01:51.940368505 +0200
@@ -436,15 +436,6 @@
print("Symlink creation does not work on this platform. "
"Skipping all symlinking.")
diff --git a/gnu/packages/patches/perf-gcc-ice.patch b/gnu/packages/patches/perf-gcc-ice.patch
deleted file mode 100644
index 58ab5359c2..0000000000
--- a/gnu/packages/patches/perf-gcc-ice.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-Work around this GCC ICE: <https://bugs.gnu.org/31708>.
-
---- linux-4.16.13/tools/perf/util/header.c 2018-06-04 11:30:39.368146035 +0200
-+++ linux-4.16.13/tools/perf/util/header.c 2018-06-04 11:34:04.667212378 +0200
-@@ -135,7 +135,7 @@ int do_write(struct feat_fd *ff, const v
- int write_padded(struct feat_fd *ff, const void *bf,
- size_t count, size_t count_aligned)
- {
-- static const char zero_buf[NAME_ALIGN];
-+ static const char zero_buf[NAME_ALIGN] = { 0 };
- int err = do_write(ff, bf, count);
-
- if (!err)
diff --git a/gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch b/gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch
deleted file mode 100644
index 6460cf5855..0000000000
--- a/gnu/packages/patches/perl-archive-tar-CVE-2018-12015.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-Fix CVE-2018-12015:
-
-https://security-tracker.debian.org/tracker/CVE-2018-12015
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-12015
-https://rt.cpan.org/Ticket/Display.html?id=125523
-
-Patch taken from this upstream commit and adapted to apply to
-the bundled copy in the Perl distribution:
-
-https://github.com/jib/archive-tar-new/commit/ae65651eab053fc6dc4590dbb863a268215c1fc5
-
-diff --git a/cpan/Archive-Tar/lib/Archive/Tar.pm b/cpan/Archive-Tar/lib/Archive/Tar.pm
-index 6244369..a83975f 100644
---- a/cpan/Archive-Tar/lib/Archive/Tar.pm
-+++ b/cpan/Archive-Tar/lib/Archive/Tar.pm
-@@ -845,6 +845,20 @@ sub _extract_file {
- return;
- }
-
-+ ### If a file system already contains a block device with the same name as
-+ ### the being extracted regular file, we would write the file's content
-+ ### to the block device. So remove the existing file (block device) now.
-+ ### If an archive contains multiple same-named entries, the last one
-+ ### should replace the previous ones. So remove the old file now.
-+ ### If the old entry is a symlink to a file outside of the CWD, the new
-+ ### entry would create a file there. This is CVE-2018-12015
-+ ### <https://rt.cpan.org/Ticket/Display.html?id=125523>.
-+ if (-l $full || -e _) {
-+ if (!unlink $full) {
-+ $self->_error( qq[Could not remove old file '$full': $!] );
-+ return;
-+ }
-+ }
- if( length $entry->type && $entry->is_file ) {
- my $fh = IO::File->new;
- $fh->open( $full, '>' ) or (
diff --git a/gnu/packages/patches/perl-deterministic-ordering.patch b/gnu/packages/patches/perl-deterministic-ordering.patch
index 92e33ef135..be63d5cde3 100644
--- a/gnu/packages/patches/perl-deterministic-ordering.patch
+++ b/gnu/packages/patches/perl-deterministic-ordering.patch
@@ -12,10 +12,10 @@ reproducibility.
cpan/Devel-PPPort/PPPort_xs.PL | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
-diff --git a/cpan/Devel-PPPort/PPPort_xs.PL b/cpan/Devel-PPPort/PPPort_xs.PL
+diff --git a/dist/Devel-PPPort/PPPort_xs.PL b/dist/Devel-PPPort/PPPort_xs.PL
index 5f18940..149f2fe 100644
---- a/cpan/Devel-PPPort/PPPort_xs.PL
-+++ b/cpan/Devel-PPPort/PPPort_xs.PL
+--- a/dist/Devel-PPPort/PPPort_xs.PL
++++ b/dist/Devel-PPPort/PPPort_xs.PL
@@ -38,7 +38,7 @@ END
my $file;
my $sec;
diff --git a/gnu/packages/patches/perl-file-path-CVE-2017-6512.patch b/gnu/packages/patches/perl-file-path-CVE-2017-6512.patch
deleted file mode 100644
index 28ab067599..0000000000
--- a/gnu/packages/patches/perl-file-path-CVE-2017-6512.patch
+++ /dev/null
@@ -1,173 +0,0 @@
-Fix CVE-2017-6512:
-
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-6512
-https://rt.cpan.org/Public/Bug/Display.html?id=121951
-
-Patch copied from Debian, adapted to apply to the copy of File::Path in Perl
-5.24.0.
-
-https://github.com/jkeenan/File-Path/commit/e5ef95276ee8ad471c66ee574a5d42552b3a6af2
-https://anonscm.debian.org/cgit/perl/perl.git/diff/debian/patches/fixes/file_path_chmod_race.diff?id=e7b50f8fb6413f8ddfbbfda2d531615fb029e2d3
-
-From d760748be0efca7c05454440e24f3df77bf7cf5d Mon Sep 17 00:00:00 2001
-From: John Lightsey <john@nixnuts.net>
-Date: Tue, 2 May 2017 12:03:52 -0500
-Subject: Prevent directory chmod race attack.
-
-CVE-2017-6512 is a race condition attack where the chmod() of directories
-that cannot be entered is misused to change the permissions on other
-files or directories on the system. This has been corrected by limiting
-the directory-permission loosening logic to systems where fchmod() is
-supported.
-
-[Backported (whitespace adjustments) to File-Path 2.12 / perl 5.24 by
-Dominic Hargreaves for Debian.]
-
-Bug: https://rt.cpan.org/Public/Bug/Display.html?id=121951
-Bug-Debian: https://bugs.debian.org/863870
-Patch-Name: fixes/file_path_chmod_race.diff
----
- cpan/File-Path/lib/File/Path.pm | 39 +++++++++++++++++++++++++--------------
- cpan/File-Path/t/Path.t | 40 ++++++++++++++++++++++++++--------------
- 2 files changed, 51 insertions(+), 28 deletions(-)
-
-diff --git a/cpan/File-Path/lib/File/Path.pm b/cpan/File-Path/lib/File/Path.pm
-index 034da1e..a824cc8 100644
---- a/cpan/File-Path/lib/File/Path.pm
-+++ b/cpan/File-Path/lib/File/Path.pm
-@@ -354,21 +354,32 @@ sub _rmtree {
-
- # see if we can escalate privileges to get in
- # (e.g. funny protection mask such as -w- instead of rwx)
-- $perm &= oct '7777';
-- my $nperm = $perm | oct '700';
-- if (
-- !(
-- $arg->{safe}
-- or $nperm == $perm
-- or chmod( $nperm, $root )
-- )
-- )
-- {
-- _error( $arg,
-- "cannot make child directory read-write-exec", $canon );
-- next ROOT_DIR;
-+ # This uses fchmod to avoid traversing outside of the proper
-+ # location (CVE-2017-6512)
-+ my $root_fh;
-+ if (open($root_fh, '<', $root)) {
-+ my ($fh_dev, $fh_inode) = (stat $root_fh )[0,1];
-+ $perm &= oct '7777';
-+ my $nperm = $perm | oct '700';
-+ local $@;
-+ if (
-+ !(
-+ $arg->{safe}
-+ or $nperm == $perm
-+ or !-d _
-+ or $fh_dev ne $ldev
-+ or $fh_inode ne $lino
-+ or eval { chmod( $nperm, $root_fh ) }
-+ )
-+ )
-+ {
-+ _error( $arg,
-+ "cannot make child directory read-write-exec", $canon );
-+ next ROOT_DIR;
-+ }
-+ close $root_fh;
- }
-- elsif ( !chdir($root) ) {
-+ if ( !chdir($root) ) {
- _error( $arg, "cannot chdir to child", $canon );
- next ROOT_DIR;
- }
-diff --git a/cpan/File-Path/t/Path.t b/cpan/File-Path/t/Path.t
-index ff52fd6..956ca09 100644
---- a/cpan/File-Path/t/Path.t
-+++ b/cpan/File-Path/t/Path.t
-@@ -3,7 +3,7 @@
-
- use strict;
-
--use Test::More tests => 127;
-+use Test::More tests => 126;
- use Config;
- use Fcntl ':mode';
- use lib 't/';
-@@ -18,6 +18,13 @@ BEGIN {
-
- my $Is_VMS = $^O eq 'VMS';
-
-+my $fchmod_supported = 0;
-+if (open my $fh, curdir()) {
-+ my ($perm) = (stat($fh))[2];
-+ $perm &= 07777;
-+ eval { $fchmod_supported = chmod( $perm, $fh); };
-+}
-+
- # first check for stupid permissions second for full, so we clean up
- # behind ourselves
- for my $perm (0111,0777) {
-@@ -299,16 +306,19 @@ is($created[0], $dir, "created directory (old style 3 mode undef) cross-check");
-
- is(rmtree($dir, 0, undef), 1, "removed directory 3 verbose undef");
-
--$dir = catdir($tmp_base,'G');
--$dir = VMS::Filespec::unixify($dir) if $Is_VMS;
-+SKIP: {
-+ skip "fchmod of directories not supported on this platform", 3 unless $fchmod_supported;
-+ $dir = catdir($tmp_base,'G');
-+ $dir = VMS::Filespec::unixify($dir) if $Is_VMS;
-
--@created = mkpath($dir, undef, 0200);
-+ @created = mkpath($dir, undef, 0400);
-
--is(scalar(@created), 1, "created write-only dir");
-+ is(scalar(@created), 1, "created read-only dir");
-
--is($created[0], $dir, "created write-only directory cross-check");
-+ is($created[0], $dir, "created read-only directory cross-check");
-
--is(rmtree($dir), 1, "removed write-only dir");
-+ is(rmtree($dir), 1, "removed read-only dir");
-+}
-
- # borderline new-style heuristics
- if (chdir $tmp_base) {
-@@ -450,26 +460,28 @@ SKIP: {
- }
-
- SKIP : {
-- my $skip_count = 19;
-+ my $skip_count = 18;
- # this test will fail on Windows, as per:
- # http://perldoc.perl.org/perlport.html#chmod
-
- skip "Windows chmod test skipped", $skip_count
- if $^O eq 'MSWin32';
-+ skip "fchmod() on directories is not supported on this platform", $skip_count
-+ unless $fchmod_supported;
- my $mode;
- my $octal_mode;
- my @inputs = (
-- 0777, 0700, 0070, 0007,
-- 0333, 0300, 0030, 0003,
-- 0111, 0100, 0010, 0001,
-- 0731, 0713, 0317, 0371, 0173, 0137,
-- 00 );
-+ 0777, 0700, 0470, 0407,
-+ 0433, 0400, 0430, 0403,
-+ 0111, 0100, 0110, 0101,
-+ 0731, 0713, 0317, 0371,
-+ 0173, 0137);
- my $input;
- my $octal_input;
-- $dir = catdir($tmp_base, 'chmod_test');
-
- foreach (@inputs) {
- $input = $_;
-+ $dir = catdir($tmp_base, sprintf("chmod_test%04o", $input));
- # We can skip from here because 0 is last in the list.
- skip "Mode of 0 means assume user defaults on VMS", 1
- if ($input == 0 && $Is_VMS);
diff --git a/gnu/packages/patches/texinfo-perl-compat.patch b/gnu/packages/patches/texinfo-perl-compat.patch
new file mode 100644
index 0000000000..a7348fde0d
--- /dev/null
+++ b/gnu/packages/patches/texinfo-perl-compat.patch
@@ -0,0 +1,51 @@
+Fix compatibility with newer Perls.
+
+The first patch is taken from upstream:
+https://svn.savannah.gnu.org/viewvc/texinfo?view=revision&revision=8008
+
+The second gets rid of a deprecation warning that breaks some tests.
+Taken from Fedora: <https://bugzilla.redhat.com/show_bug.cgi?id=1590308>.
+
+--- trunk/tp/Texinfo/Convert/XSParagraph/xspara.c 2017/04/30 14:57:26 7765
++++ trunk/tp/Texinfo/Convert/XSParagraph/xspara.c 2018/07/13 15:39:29 8008
+@@ -248,6 +248,11 @@
+
+ dTHX;
+
++#if PERL_VERSION > 27 || (PERL_VERSION == 27 && PERL_SUBVERSION > 8)
++ /* needed due to thread-safe locale handling in newer perls */
++ switch_to_global_locale();
++#endif
++
+ if (setlocale (LC_CTYPE, "en_US.UTF-8")
+ || setlocale (LC_CTYPE, "en_US.utf8"))
+ goto success;
+@@ -320,6 +325,10 @@
+ {
+ success: ;
+ free (utf8_locale);
++#if PERL_VERSION > 27 || (PERL_VERSION == 27 && PERL_SUBVERSION > 8)
++ /* needed due to thread-safe locale handling in newer perls */
++ sync_locale();
++#endif
+ /*
+ fprintf (stderr, "tried to set LC_CTYPE to UTF-8.\n");
+ fprintf (stderr, "character encoding is: %s\n",
+
+diff -up texinfo-6.5/tp/Texinfo/Parser.pm.orig texinfo-6.5/tp/Texinfo/Parser.pm
+--- texinfo-6.5/tp/Texinfo/Parser.pm.orig 2018-06-12 13:40:29.356030136 +0200
++++ texinfo-6.5/tp/Texinfo/Parser.pm 2018-06-12 13:41:28.357725639 +0200
+@@ -5478,11 +5478,11 @@ sub _parse_special_misc_command($$$$)
+ }
+ } elsif ($command eq 'clickstyle') {
+ # REMACRO
+- if ($line =~ /^\s+@([[:alnum:]][[:alnum:]\-]*)({})?\s*/) {
++ if ($line =~ /^\s+@([[:alnum:]][[:alnum:]\-]*)(\{})?\s*/) {
+ $args = ['@'.$1];
+ $self->{'clickstyle'} = $1;
+ $remaining = $line;
+- $remaining =~ s/^\s+@([[:alnum:]][[:alnum:]\-]*)({})?\s*(\@(c|comment)((\@|\s+).*)?)?//;
++ $remaining =~ s/^\s+@([[:alnum:]][[:alnum:]\-]*)(\{})?\s*(\@(c|comment)((\@|\s+).*)?)?//;
+ $has_comment = 1 if (defined($4));
+ } else {
+ $self->line_error (sprintf($self->__(
diff --git a/gnu/packages/pcre.scm b/gnu/packages/pcre.scm
index 5719b7bb45..564a23d012 100644
--- a/gnu/packages/pcre.scm
+++ b/gnu/packages/pcre.scm
@@ -35,7 +35,7 @@
(define-public pcre
(package
(name "pcre")
- (version "8.41")
+ (version "8.42")
(source (origin
(method url-fetch)
(uri (list
@@ -46,11 +46,12 @@
version "/pcre-" version ".tar.bz2")))
(sha256
(base32
- "0c5m469p5pd7jip621ipq6hbgh7128lzh7xndllfgh77ban7wb76"))))
+ "00ckpzlgyr16bnqx8fawa3afjgqxw5yxgs2l081vw23qi1y4pl1c"))))
(build-system gnu-build-system)
(outputs '("out" ;library & headers
"bin" ;depends on Readline (adds 20MiB to the closure)
- "doc")) ;1.8 MiB of HTML
+ "doc" ;1.8 MiB of HTML
+ "static")) ;1.8 MiB static libraries
(inputs `(("bzip2" ,bzip2)
("readline" ,readline)
("zlib" ,zlib)))
@@ -63,7 +64,19 @@
"--enable-unicode-properties"
"--enable-pcre16"
"--enable-pcre32"
- "--enable-jit")))
+ "--enable-jit")
+ #:phases (modify-phases %standard-phases
+ (add-after 'install 'move-static-libs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((source (string-append (assoc-ref outputs "out") "/lib"))
+ (static (string-append (assoc-ref outputs "static") "/lib")))
+ (mkdir-p static)
+ (for-each (lambda (lib)
+ (link lib (string-append static "/"
+ (basename lib)))
+ (delete-file lib))
+ (find-files source "\\.a$"))
+ #t))))))
(synopsis "Perl Compatible Regular Expressions")
(description
"The PCRE library is a set of functions that implement regular expression
diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm
index 2778f1d6a3..b82222c2fe 100644
--- a/gnu/packages/pdf.scm
+++ b/gnu/packages/pdf.scm
@@ -80,14 +80,14 @@
(define-public poppler
(package
(name "poppler")
- (version "0.63.0")
+ (version "0.67.0")
(source (origin
(method url-fetch)
(uri (string-append "https://poppler.freedesktop.org/poppler-"
version ".tar.xz"))
(sha256
(base32
- "04d1z1ygyb3llzc6s6c99wxafvljj2sc5b76djif34f7mzfqmk17"))))
+ "1yb6agmcxf0ixqm65d4aknl0hgmswf94x0k59ic0qqav1wd4yjm3"))))
(build-system cmake-build-system)
;; FIXME:
;; use libcurl: no
diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index 9f62608860..8bdd221a53 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -45,7 +45,6 @@
#:use-module (guix download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system perl)
- #:use-module (guix utils) ;substitute-keyword-arguments for perl-5.26.2
#:use-module (gnu packages base)
#:use-module (gnu packages compression)
#:use-module (gnu packages freedesktop)
@@ -62,17 +61,15 @@
;; Yeah, Perl... It is required early in the bootstrap process by Linux.
(package
(name "perl")
- (version "5.26.1")
- (replacement perl/fixed)
+ (version "5.28.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cpan/src/5.0/perl-"
version ".tar.gz"))
(sha256
(base32
- "1p81wwvr5jb81m41d07kfywk5gvbk0axdrnvhc2aghcdbr4alqz7"))
+ "1a3f822lcl8dr8v0hk80yyhpzqlljg49z9flb48rs3nbsij9z4ky"))
(patches (search-patches
- "perl-file-path-CVE-2017-6512.patch"
"perl-no-sys-dirs.patch"
"perl-autosplit-default-time.patch"
"perl-deterministic-ordering.patch"
@@ -161,41 +158,6 @@
(home-page "http://www.perl.org/")
(license gpl1+))) ; or "Artistic"
-;; Fixes CVE-2018-6797, CVE-2018-6798, and CVE-2018-6913.
-;; See <https://metacpan.org/changes/release/SHAY/perl-5.26.2>.
-(define perl-5.26.2
- (package
- (inherit perl)
- (version "5.26.2")
- (source (origin
- (inherit (package-source perl))
- (uri (string-append "mirror://cpan/src/5.0/perl-"
- version ".tar.gz"))
- (patches (append (origin-patches (package-source perl))
- (search-patches "perl-archive-tar-CVE-2018-12015.patch")))
- (sha256
- (base32
- "03gpnxx1g6hvlh0v4aqx00580h787sfywp1vlvw64q2xcbm9qbsp"))))))
-
-;; When grafting perl, complications arise when the replacement perl has a
-;; different version number than the original. So, here we create a version
-;; of perl-5.26.2 that thinks it is version 5.26.1. See
-;; <https://bugs.gnu.org/31210> and <https://bugs.gnu.org/31216>.
-(define perl/fixed
- (package
- (inherit perl-5.26.2)
- (version "5.26.1")
- (arguments
- (substitute-keyword-arguments (package-arguments perl-5.26.2)
- ((#:phases phases)
- `(modify-phases ,phases
- (add-after 'unpack 'revert-perl-subversion
- (lambda _
- (substitute* "patchlevel.h"
- (("^#define PERL_SUBVERSION 2")
- "#define PERL_SUBVERSION 1"))
- #t))))))))
-
(define-public perl-algorithm-c3
(package
(name "perl-algorithm-c3")
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index f612b99d01..176f044df1 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -340,13 +340,13 @@ password storage.")
(define-public python-certifi
(package
(name "python-certifi")
- (version "2017.1.23")
+ (version "2018.8.13")
(source (origin
(method url-fetch)
(uri (pypi-uri "certifi" version))
(sha256
(base32
- "1klrzl3hgvcf2mjk00g0k3kk1p2z27vzwnxivwar4vhjmjvpz1w1"))))
+ "1x7jy10rz3100g9iw7c2czcw2z4lqfaalsd8yg991l4d82hnh7ac"))))
(build-system python-build-system)
(home-page "https://certifi.io/")
(synopsis "Python CA certificate bundle")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index fd76c0c60c..1230f70572 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1286,14 +1286,14 @@ authenticated session objects providing things like keep-alive.")
(define-public python-urllib3
(package
(name "python-urllib3")
- (version "1.18.1")
+ (version "1.23")
(source
(origin
(method url-fetch)
(uri (pypi-uri "urllib3" version))
(sha256
(base32
- "1wb8aqnq53vzh2amrv8kc66f3h6fx217y0q62y6n30a64p2yqmam"))))
+ "1bvbd35q3zdcd7gsv38fwpizy7p06dr0154g5gfybrvnbvhwb2m6"))))
(build-system python-build-system)
(arguments `(#:tests? #f))
(native-inputs
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index 3c46102da1..244faa273a 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -145,7 +145,7 @@
(define-public python-2.7
(package
(name "python2")
- (version "2.7.14")
+ (version "2.7.15")
(source
(origin
(method url-fetch)
@@ -153,7 +153,7 @@
version "/Python-" version ".tar.xz"))
(sha256
(base32
- "0rka541ys16jwzcnnvjp2v12m4cwgd2jp6wj4kj511p715pb5zvi"))
+ "0x2mvz9dp11wj7p5ccvmk9s0hzjk2fa1m462p395l4r6bfnb3n92"))
(patches (search-patches "python-2.7-search-paths.patch"
"python-2-deterministic-build-info.patch"
"python-2.7-site-prefixes.patch"
@@ -178,23 +178,7 @@
"tk")) ;tkinter; adds 50 MiB to the closure
(build-system gnu-build-system)
(arguments
- `(;; 356 tests OK.
- ;; 6 tests failed:
- ;; test_compileall test_distutils test_import test_shutil test_socket
- ;; test_subprocess
- ;; 39 tests skipped:
- ;; test_aepack test_al test_applesingle test_bsddb test_bsddb185
- ;; test_bsddb3 test_cd test_cl test_codecmaps_cn test_codecmaps_hk
- ;; test_codecmaps_jp test_codecmaps_kr test_codecmaps_tw test_curses
- ;; test_dl test_gdb test_gl test_imageop test_imgfile test_ioctl
- ;; test_kqueue test_linuxaudiodev test_macos test_macostools
- ;; test_msilib test_ossaudiodev test_scriptpackages test_smtpnet
- ;; test_socketserver test_startfile test_sunaudiodev test_timeout
- ;; test_tk test_ttk_guionly test_urllib2net test_urllibnet
- ;; test_winreg test_winsound test_zipfile64
- ;; 4 skips unexpected on linux2:
- ;; test_bsddb test_bsddb3 test_gdb test_ioctl
- #:test-target "test"
+ `(#:test-target "test"
#:configure-flags
(list "--enable-shared" ;allow embedding
"--with-system-ffi" ;build ctypes
@@ -219,11 +203,6 @@
"Lib/test/support/__init__.py"
"Lib/test/test_subprocess.py"))
(("/bin/sh") (which "sh")))
-
- ;; Use zero as the timestamp in .pyc files so that builds are
- ;; deterministic. TODO: Remove it when this variable is set in
- ;; gnu-build-system.scm.
- (setenv "SOURCE_DATE_EPOCH" "1")
#t))
(add-before 'configure 'do-not-record-configure-flags
(lambda* (#:key configure-flags #:allow-other-keys)
@@ -281,15 +260,6 @@
file))))))
(call-with-output-file "__init__.py" (const #t))
#t)))))))
- (add-before 'strip 'make-libraries-writable
- (lambda* (#:key outputs #:allow-other-keys)
- ;; Make .so files writable so they can be stripped.
- (let ((out (assoc-ref outputs "out")))
- (for-each (lambda (file)
- (chmod file #o755))
- (find-files (string-append out "/lib")
- "\\.so"))
- #t)))
(add-after 'install 'move-tk-inter
(lambda* (#:key outputs #:allow-other-keys)
;; When Tkinter support is built move it to a separate output so
@@ -351,10 +321,10 @@ data types.")
(name "python")
(properties `((superseded . ,python-2)))))
-(define-public python-3.6
+(define-public python-3.7
(package (inherit python-2)
(name "python")
- (version "3.6.5")
+ (version "3.7.0")
(source (origin
(method url-fetch)
(uri (string-append "https://www.python.org/ftp/python/"
@@ -367,66 +337,33 @@ data types.")
(patch-flags '("-p0"))
(sha256
(base32
- "19l7inxm056jjw33zz97z0m02hsi7jnnx5kyb76abj5ml4xhad7l"))
+ "0j9mic5c9lbd2b20wka7hily7szz740wy9ilfrczxap63rnrk0h3"))
(snippet
'(begin
(for-each delete-file
- '("Lib/ctypes/test/test_structures.py" ; fails on aarch64
- "Lib/ctypes/test/test_win32.py" ; fails on aarch64
- "Lib/test/test_fcntl.py")) ; fails on aarch64
+ '("Lib/ctypes/test/test_win32.py" ; fails on aarch64
+ "Lib/test/test_fcntl.py" ; fails on aarch64
+ "Lib/test/test_posix.py")) ; fails on aarch64
#t))))
(arguments
(substitute-keyword-arguments (package-arguments python-2)
- ((#:tests? _) #t)
((#:phases phases)
- `(modify-phases ,phases
- (add-after 'unpack 'patch-timestamp-for-pyc-files
- (lambda _
- ;; We set DETERMINISTIC_BUILD to only override the mtime when
- ;; building with Guix, lest we break auto-compilation in
- ;; environments.
- (setenv "DETERMINISTIC_BUILD" "1")
- (substitute* "Lib/py_compile.py"
- (("source_stats\\['mtime'\\]")
- "(1 if 'DETERMINISTIC_BUILD' in os.environ else source_stats['mtime'])"))
-
- ;; Use deterministic hashes for strings, bytes, and datetime
- ;; objects.
- (setenv "PYTHONHASHSEED" "0")
-
- ;; Reset mtime when validating bytecode header.
- (substitute* "Lib/importlib/_bootstrap_external.py"
- (("source_mtime = int\\(source_stats\\['mtime'\\]\\)")
- "source_mtime = 1"))
- #t))
- ;; These tests fail because of our change to the bytecode
- ;; validation. They fail because expected exceptions do not get
- ;; thrown. This seems to be no problem.
- (add-after 'unpack 'disable-broken-bytecode-tests
- (lambda _
- (substitute* "Lib/test/test_importlib/source/test_file_loader.py"
- (("test_bad_marshal")
- "disable_test_bad_marshal")
- (("test_no_marshal")
- "disable_test_no_marshal")
- (("test_non_code_marshal")
- "disable_test_non_code_marshal"))
- #t))
- ;; Unset DETERMINISTIC_BUILD to allow for tests that check that
- ;; stale pyc files are rebuilt.
- (add-before 'check 'allow-non-deterministic-compilation
- (lambda _ (unsetenv "DETERMINISTIC_BUILD") #t))
- ;; We need to rebuild all pyc files for three different
- ;; optimization levels to replace all files that were not built
- ;; deterministically.
-
- ;; FIXME: Without this phase we have close to 2000 files that
+ `(modify-phases ,phases
+ ;; Unset SOURCE_DATE_EPOCH while running the test-suite and set it
+ ;; again afterwards. See <https://bugs.python.org/issue34022>.
+ (add-before 'check 'unset-SOURCE_DATE_EPOCH
+ (lambda _ (unsetenv "SOURCE_DATE_EPOCH") #t))
+ (add-after 'check 'reset-SOURCE_DATE_EPOCH
+ (lambda _ (setenv "SOURCE_DATE_EPOCH" "1") #t))
+ ;; FIXME: Without this phase we have close to 400 files that
;; differ across different builds of this package. With this phase
- ;; there are about 500 files left that differ.
- (add-after 'install 'rebuild-bytecode
+ ;; there are 44 files left that differ.
+ (add-after 'remove-tests 'rebuild-bytecode
(lambda* (#:key outputs #:allow-other-keys)
- (setenv "DETERMINISTIC_BUILD" "1")
(let ((out (assoc-ref outputs "out")))
+ ;; Disable hash randomization to ensure the generated .pycs
+ ;; are reproducible.
+ (setenv "PYTHONHASHSEED" "0")
(for-each
(lambda (opt)
(format #t "Compiling with optimization level: ~a\n"
@@ -438,8 +375,7 @@ data types.")
"-m" "compileall"
"-f" ; force rebuild
;; Don't build lib2to3, because it's Python 2 code.
- ;; Also don't build obviously broken test code.
- "-x" "(lib2to3|test/bad.*)"
+ "-x" "lib2to3/.*"
,file)))
(find-files out "\\.py$")))
(list '() '("-O") '("-OO")))
@@ -452,7 +388,7 @@ data types.")
"/site-packages"))))))))
;; Current 3.x version.
-(define-public python-3 python-3.6)
+(define-public python-3 python-3.7)
;; Current major version.
(define-public python python-3)
@@ -681,18 +617,24 @@ by @code{binstar}, @code{binstar-build} and @code{chalmers}.")
(define-public python-babel
(package
(name "python-babel")
- (version "2.3.4")
+ (version "2.6.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Babel" version))
(sha256
(base32
- "0x98qqqw35xllpcama013a9788ly84z8dm1w2wwfpxh2710c8df5"))))
+ "08rxmbx2s4irp0w0gmn498vns5xy0fagm0fg33xa772jiks51flc"))))
(build-system python-build-system)
+ (native-inputs
+ `(("python-freezegun" ,python-freezegun)
+ ("python-pytest" ,python-pytest)))
(propagated-inputs
`(("python-pytz" ,python-pytz)))
- (arguments `(#:tests? #f)) ; no test target
+ (arguments
+ `(#:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda _ (invoke "pytest" "-vv"))))))
(home-page "http://babel.pocoo.org/")
(synopsis
"Tools for internationalizing Python applications")
@@ -908,14 +850,14 @@ API for locking files.")
(define-public python-setuptools
(package
(name "python-setuptools")
- (version "31.0.0")
+ (version "40.0.0")
(source
(origin
(method url-fetch)
- (uri (pypi-uri "setuptools" version))
+ (uri (pypi-uri "setuptools" version ".zip"))
(sha256
(base32
- "0ypybh4hx3bv4vhg2dc74xpj1g56ggnaffm87k4abhwjwq6wq608"))
+ "0pq116lr14gnc62v76nk0npkm6krb2mpp7p9ab369zgv4n7dnah1"))
(modules '((guix build utils)))
(snippet
'(begin
@@ -1750,14 +1692,14 @@ matching them against a list of media-ranges.")
(define-public python-py
(package
(name "python-py")
- (version "1.5.3")
+ (version "1.5.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "py" version))
(sha256
(base32
- "10gq2lckvgwlk9w6yzijhzkarx44hsaknd0ypa08wlnpjnsgmj99"))))
+ "1xxvwfn82457djf55f5n2c94699rfqnk43br8fif2r2q8gvrmm9z"))))
(build-system python-build-system)
(arguments
;; FIXME: "ImportError: 'test' module incorrectly imported from
@@ -1765,7 +1707,9 @@ matching them against a list of media-ranges.")
;; Expected '/tmp/guix-build-python-py-1.4.31.drv-0/py-1.4.31/py'.
;; Is this module globally installed?"
'(#:tests? #f))
- (home-page "https://pylib.readthedocs.io/")
+ (native-inputs
+ `(("python-setuptools-scm" ,python-setuptools-scm)))
+ (home-page "https://github.com/pytest-dev/py")
(synopsis "Python library for parsing, I/O, instrospection, and logging")
(description
"Py is a Python library for file name parsing, .ini file parsing, I/O,
@@ -2255,7 +2199,7 @@ object.")
(define-public python-markupsafe
(package
(name "python-markupsafe")
- (version "0.23")
+ (version "1.0")
(source
(origin
(method url-fetch)
@@ -2264,7 +2208,7 @@ object.")
version ".tar.gz"))
(sha256
(base32
- "1hvip33wva3fnmvfp9x5klqri7hpl1hkgqmjbss18nmrb7zimv54"))))
+ "0rdn1s8x9ni7ss8rfiacj7x1085lx8mh2zdwqslnw8xc3l4nkgm6"))))
(build-system python-build-system)
(home-page "https://github.com/mitsuhiko/markupsafe")
(synopsis "XML/HTML/XHTML markup safe string implementation for Python")
@@ -2279,14 +2223,14 @@ for Python.")
(define-public python-jinja2
(package
(name "python-jinja2")
- (version "2.9.6")
+ (version "2.10")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Jinja2" version))
(sha256
(base32
- "1zzrkywhziqffrzks14kzixz7nd4yh2vc0fb04a68vfd2ai03anx"))))
+ "190l36hfw3wb2n3n68yacjabxyb1pnxwn7vjx96cmjj002xy2jzq"))))
(build-system python-build-system)
(propagated-inputs
`(("python-markupsafe" ,python-markupsafe)))
@@ -2442,26 +2386,17 @@ reStructuredText.")
(define-public python-sphinxcontrib-websupport
(package
(name "python-sphinxcontrib-websupport")
- (version "1.0.1")
+ (version "1.1.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "sphinxcontrib-websupport" version))
(sha256
(base32
- "1f9f0wjpi9nhikbyaz6d19s7qvzdf1nq2g5dsh640fma4q9rd1bs"))))
+ "1ff3ix76xi1y6m99qxhaq5161ix9swwzydilvdya07mgbcvpzr4x"))))
(build-system python-build-system)
- (propagated-inputs
- `(("python-mock" ,python-mock)
- ("python-pytest" ,python-pytest)
- ("python-xapian-bindings" ,python-xapian-bindings)))
- ;; Needed for running the test suite
- (native-inputs
- `(("python-six" ,python-six)
- ("python-jinja2" ,python-jinja2)
- ("python-docutils" ,python-docutils)
- ("python-sphinx" ,python-sphinx)
- ("python-sqlalchemy" ,python-sqlalchemy)
- ("python-whoosh" ,python-whoosh)))
+ (arguments
+ ;; FIXME: Tests depend on Sphinx, which depends on this.
+ `(#:tests? #f))
(home-page "http://sphinx-doc.org/")
(synopsis "Sphinx API for web applications")
(description "This package provides a Python API to easily integrate
@@ -2469,17 +2404,20 @@ Sphinx documentation into your web application. It provides tools to
integrate Sphinx documents in web templates and to handle searches.")
(license license:bsd-3)))
+(define-public python2-sphinxcontrib-websupport
+ (package-with-python2 python-sphinxcontrib-websupport))
+
(define-public python-sphinx
(package
(name "python-sphinx")
- (version "1.5.1")
+ (version "1.7.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "Sphinx" version))
(sha256
(base32
- "1i8p9idnli4gr0y4x67yakbdk5w6a0xjzhrg6bg51y9d1fi7fslf"))))
+ "0pkkbfj7cl157q550gcs45am5y78ps0h7q6455d64s1zmw01jlvi"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -2488,7 +2426,15 @@ integrate Sphinx documents in web templates and to handle searches.")
(lambda _
;; Requires Internet access.
(delete-file "tests/test_build_linkcheck.py")
- (zero? (system* "make" "test")))))))
+ (substitute* "tests/test_build_latex.py"
+ (("@pytest.mark.sphinx\\('latex', testroot='images'\\)")
+ "@pytest.mark.skip()"))
+ (when (which "python")
+ ;; XXX: These tests are broken when using Python2:
+ ;; <https://github.com/sphinx-doc/sphinx/issues/4710>.
+ (delete-file "tests/test_api_translator.py")
+ (delete-file "tests/test_setup_command.py"))
+ (invoke "make" "test"))))))
(propagated-inputs
`(("python-imagesize" ,python-imagesize)
("python-sphinx-alabaster-theme"
@@ -2497,14 +2443,18 @@ integrate Sphinx documents in web templates and to handle searches.")
("python-snowballstemmer" ,python-snowballstemmer)
("python-docutils" ,python-docutils)
("python-jinja2" ,python-jinja2)
+ ("python-packaging" ,python-packaging)
("python-pygments" ,python-pygments)
("python-requests" ,python-requests)
- ("python-six" ,python-six)))
+ ("python-six" ,python-six)
+ ("python-sphinxcontrib-websupport" ,python-sphinxcontrib-websupport)))
(native-inputs
`(("graphviz" ,graphviz)
+ ("imagemagick" ,imagemagick) ;for "convert"
("python-html5lib" ,python-html5lib)
("python-mock" ,python-mock)
- ("python-nose" ,python-nose)))
+ ("python-nose" ,python-nose)
+ ("python-pytest" ,python-pytest)))
(home-page "http://sphinx-doc.org/")
(synopsis "Python documentation generator")
(description "Sphinx is a tool that makes it easy to create documentation
@@ -2513,62 +2463,6 @@ sources.")
(license license:bsd-3)
(properties `((python2-variant . ,(delay python2-sphinx))))))
-(define-public python-sphinx-1.6
- (package (inherit python-sphinx)
- (name "python-sphinx")
- (version "1.6.4")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "Sphinx" version))
- (sha256
- (base32
- "0gjakw9fv5pwqb5yyclxycs36sapxizk1vx6mkcdizmzgzcfy0gi"))))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (replace 'check
- (lambda _
- ;; Requires Internet access.
- (delete-file "tests/test_build_linkcheck.py")
- (substitute* "tests/test_build_latex.py"
- (("@pytest.mark.sphinx\\('latex', testroot='images'\\)")
- "@pytest.mark.skip()"))
- (zero? (system* "make" "test")))))))
- (propagated-inputs
- `(("python-sphinxcontrib-websupport" ,python-sphinxcontrib-websupport)
- ,@(package-propagated-inputs python-sphinx)))
- (native-inputs
- `(("python-pytest" ,python-pytest)
- ("imagemagick" ,imagemagick) ; for "convert"
- ,@(package-native-inputs python-sphinx)))
- (properties `((python2-variant . ,(delay python2-sphinx-1.6))))))
-
-(define-public python2-sphinx-1.6
- (let ((base (package-with-python2 (strip-python2-variant python-sphinx-1.6))))
- (package
- (inherit base)
- (propagated-inputs
- `(("python2-typing" ,python2-typing)
- ,@(package-propagated-inputs base)))
- (native-inputs `(("python2-enum34" ,python2-enum34)
- ,@(package-native-inputs base))))))
-
-(define-public python-sphinx-1.5.3
- (package
- (inherit python-sphinx)
- (name "python-sphinx")
- (version "1.5.3")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "Sphinx" version))
- (sha256
- (base32
- "0kw1axswbvaavr8ggyf4qr6hnisnrzlbkkcdada69vk1x9xjassg"))))
- (native-inputs
- `(("python-pytest" ,python-pytest)
- ,@(package-native-inputs python-sphinx)))))
-
(define-public python2-sphinx
(let ((base (package-with-python2 (strip-python2-variant python-sphinx))))
(package
@@ -2577,6 +2471,7 @@ sources.")
("python2-enum34" ,python2-enum34)
,@(package-native-inputs base)))
(propagated-inputs `(("python2-pytz" ,python2-pytz)
+ ("python2-typing" ,python2-typing)
,@(package-propagated-inputs base))))))
(define-public python-sphinx-gallery
@@ -2864,7 +2759,11 @@ and is very extensible.")
'())
(replace 'check
- (lambda _ (invoke "python" "runtests.py" "-vv"))))))
+ (lambda _
+ ;; The "with_outer_raising" test fails with Python 3.7. See
+ ;; https://github.com/cython/cython/issues/2454
+ (delete-file "tests/run/generators_py.py")
+ (invoke "python" "runtests.py" "-vv"))))))
(home-page "http://cython.org/")
(synopsis "C extensions for Python")
(description "Cython is an optimising static compiler for both the Python
@@ -3341,25 +3240,14 @@ that client code uses to construct the grammar directly in Python code.")
(define-public python-numpydoc
(package
(name "python-numpydoc")
- (version "0.5")
+ (version "0.8.0")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://pypi.python.org/packages/source/n/numpydoc/numpydoc-"
- version ".tar.gz"))
+ (uri (pypi-uri "numpydoc" version))
(sha256
(base32
- "0d4dnifaxkll50jx6czj05y8cb4ny60njd2wz299sj2jxfy51w4k"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Drop a test requiring matplotlib, which we cannot add as an
- ;; input since it would create a circular dependency: Extend the
- ;; test for Python 3, where it is already dropped, to Python 2.
- (substitute* "numpydoc/tests/test_plot_directive.py"
- (("3") "2"))
- #t))))
+ "1zazxg3m8j4fksv3f7v7vpf4bj9qb1vj3r326am0vdip141vzx31"))))
(build-system python-build-system)
(propagated-inputs
`(("python-sphinx" ,python-sphinx)))
@@ -3578,7 +3466,7 @@ toolkits.")
(native-inputs
`(("python-matplotlib" ,python-matplotlib)
("python-colorspacious" ,python-colorspacious)
- ("python-sphinx" ,python-sphinx-1.6)
+ ("python-sphinx" ,python-sphinx)
("python-sphinx-gallery" ,python-sphinx-gallery)
("python-numpydoc" ,python-numpydoc)
("python-ipython" ,python-ipython)
@@ -3853,14 +3741,14 @@ as the original project seems to have been abandoned circa 2007.")
(define-public python-pycodestyle
(package
(name "python-pycodestyle")
- (version "2.3.1")
+ (version "2.4.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pycodestyle" version))
(sha256
(base32
- "0rk78b66p57ala26mdldl9lafr48blv5s659sah9q50qnfjmc8k8"))))
+ "0fhy4vnlgpjq4qd1wdnl6pvdw7rah0ypmn8c9mkhz8clsndskz6b"))))
(build-system python-build-system)
(home-page "https://pycodestyle.readthedocs.io/")
(synopsis "Python style guide checker")
@@ -4013,7 +3901,7 @@ services for your Python modules and applications.")
(define-public python-olefile
(package
(name "python-olefile")
- (version "0.44")
+ (version "0.45.1")
(source
(origin
(method url-fetch)
@@ -4022,7 +3910,7 @@ services for your Python modules and applications.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1wmxbrhyqjry2000zx0zdhqdqxhgi06nz7sbzjlh222q2zjv1gpj"))))
+ "18ai19zwagm6nli14k8bii31ipbab2rp7plrvsm6gmfql551a8ai"))))
(build-system python-build-system)
(home-page
"https://www.decalage.info/python/olefileio")
@@ -4095,14 +3983,14 @@ a general image processing tool.")
(define-public python-pycparser
(package
(name "python-pycparser")
- (version "2.17")
+ (version "2.18")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pycparser" version))
(sha256
(base32
- "1dkkjri0miidqb1zcqhqljfa34fcy9k5akasgwsv6k622zlk3b0a"))))
+ "09mjyw82ibqzl449g7swy8bfxnfpmas0815d2rkdjlcqw81wma4r"))))
(outputs '("out" "doc"))
(build-system python-build-system)
(native-inputs
@@ -4481,13 +4369,13 @@ child application and control it as if a human were typing commands.")
(define-public python-setuptools-scm
(package
(name "python-setuptools-scm")
- (version "1.15.6")
+ (version "3.1.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "setuptools_scm" version))
(sha256
(base32
- "0pzvfmx8s20yrgkgwfbxaspz2x1g38qv61jpm0ns91lrb22ldas9"))))
+ "0h4bglwfz8b9prqljv8z3w9rgydfyxzaj05bm1y6zs5m6shz548i"))))
(build-system python-build-system)
(home-page "https://github.com/pypa/setuptools_scm/")
(synopsis "Manage Python package versions in SCM metadata")
@@ -4940,15 +4828,15 @@ toolkit. Use it to build trees of widgets.")
(define-public python-dbus
(package
(name "python-dbus")
- (version "1.2.0")
+ (version "1.2.8")
(source
(origin
(method url-fetch)
- (uri (string-append
- "https://dbus.freedesktop.org/releases/dbus-python/dbus-python-"
- version ".tar.gz"))
+ (uri (string-append "https://dbus.freedesktop.org/releases/dbus-python/"
+ "dbus-python-" version ".tar.gz"))
(sha256
- (base32 "1py62qir966lvdkngg0v8k1khsqxwk5m4s8nflpk1agk5f5nqb71"))))
+ (base32
+ "0vvvjmiwnc9cjlks3gcdk43ap7llhlpz7cm1wbw0nc2yfsxjpwdb"))))
(build-system gnu-build-system)
(arguments
'(#:phases
@@ -4964,7 +4852,7 @@ toolkit. Use it to build trees of widgets.")
(native-inputs
`(("pkg-config" ,pkg-config)))
(inputs
- `(("python" ,python)
+ `(("python" ,python-wrapper)
("dbus-glib" ,dbus-glib)))
(synopsis "Python bindings for D-bus")
(description "python-dbus provides bindings for libdbus, the reference
@@ -4986,14 +4874,14 @@ implementation of D-Bus.")
(define-public python-lxml
(package
(name "python-lxml")
- (version "3.8.0")
+ (version "4.2.4")
(source
(origin
(method url-fetch)
(uri (pypi-uri "lxml" version))
(sha256
(base32
- "15nvf6n285n282682qyw3wihsncb0x5amdhyi4b83bfa2nz74vvk"))))
+ "1jk336k0kw616gfhqk1wwxsjjwz0flld0n294lz8kxch610bxbz2"))))
(build-system python-build-system)
(inputs
`(("libxml2" ,libxml2)
@@ -5609,14 +5497,14 @@ PEP 8.")
(define-public python-pyflakes
(package
(name "python-pyflakes")
- (version "1.5.0")
+ (version "2.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pyflakes" version))
(sha256
(base32
- "1x1pcca4a24k4pw8x1c77sgi58cg1wl2k38mp8a25k608pzls3da"))))
+ "0jba28czyvimdc72llms3f17swp3i8jdcabf5w0j00adfbn64xls"))))
(build-system python-build-system)
(home-page
"https://github.com/pyflakes/pyflakes")
@@ -5714,33 +5602,44 @@ complexity of Python source code.")
(define-public python-flake8
(package
(name "python-flake8")
- (version "3.4.1")
+ (version "3.5.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "flake8" version))
(sha256
(base32
- "1n0i38592vy3q0x2a9bf8z6rhhn04i30wsn5i5zzcj7qkxvl8062"))))
+ "184b33grvvjmiwlv9kyd7yng9qv5ld24154j70z332xxg9gjclvj"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
+ ;; Two errors don't seem to have assigned codes.
+ (add-after 'unpack 'delete-broken-test
+ (lambda _ (delete-file "tests/unit/test_pyflakes_codes.py") #t))
+ (add-after 'unpack 'fix-problem-with-pycodestyle
+ (lambda _
+ ;; See https://gitlab.com/pycqa/flake8/merge_requests/230
+ ;; This should no longer be needed with the next release.
+ (substitute* "setup.py"
+ (("PEP8_PLUGIN\\('break_around_binary_operator'\\),")
+ "PEP8_PLUGIN('break_after_binary_operator'),\
+PEP8_PLUGIN('break_before_binary_operator'),"))
+ #t))
(delete 'check)
(add-after 'install 'check
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (add-installed-pythonpath inputs outputs)
- (zero? (system* "pytest" "-v")))))))
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (add-installed-pythonpath inputs outputs)
+ (invoke "pytest" "-v")
+ #t)))))
(propagated-inputs
- `(("python-pycodestyle" ,python-pycodestyle)
- ("python-pyflakes" ,python-pyflakes)
- ;; flake8 depends on a newer setuptools than provided by python.
- ("python-setuptools" ,python-setuptools)
- ("python-mccabe" ,python-mccabe)))
+ `(("python-pycodestyle" ,python-pycodestyle)
+ ("python-pyflakes" ,python-pyflakes)
+ ("python-mccabe" ,python-mccabe)))
(native-inputs
- `(("python-mock" ,python-mock) ; TODO: only required for < 3.3
- ("python-pytest" ,python-pytest-bootstrap)
- ("python-pytest-runner" ,python-pytest-runner)))
+ `(("python-mock" ,python-mock)
+ ("python-pytest" ,python-pytest-bootstrap)
+ ("python-pytest-runner" ,python-pytest-runner)))
(home-page "https://gitlab.com/pycqa/flake8")
(synopsis
"The modular source code checker: pep8, pyflakes and co")
@@ -5991,28 +5890,18 @@ add functionality and customization to your projects with their own plugins.")
(define-public python-fonttools
(package
(name "python-fonttools")
- (version "3.15.1")
+ (version "3.28.0")
(source (origin
(method url-fetch)
(uri (pypi-uri "fonttools" version ".zip"))
(sha256
(base32
- "1hhj97izwliy0vybmza72d90l5d4mcn50y8akq7kyccfl82vdx4d"))))
+ "0vsvjhidpb5kywpjgz1j3fywzkddxkb0afqai18qa3h6lqjyxwpb"))))
(build-system python-build-system)
- (arguments
- '(#:test-target "check"
- #:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'patch-setuppy
- ;; Remove the undocumented "extra_path" argument, which adds an
- ;; intervening directories between site-packages and the package
- ;; directory.
- (lambda _
- (substitute* "setup.py"
- (("^[ \t]*extra_path *= *'FontTools',") ""))
- #t)))))
(native-inputs
- `(("unzip" ,unzip)))
+ `(("unzip" ,unzip)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-runner" ,python-pytest-runner)))
(home-page "https://github.com/behdad/fonttools")
(synopsis "Tools to manipulate font files")
(description
@@ -6021,9 +5910,7 @@ supports reading and writing of TrueType/OpenType fonts, reading and writing
of AFM files, reading (and partially writing) of PS Type 1 fonts. The package
also contains a tool called “TTX” which converts TrueType/OpenType fonts to and
from an XML-based format.")
- (license (license:non-copyleft
- "file://LICENSE.txt"
- "See LICENSE.txt in the distribution."))))
+ (license license:expat)))
(define-public python2-fonttools
(package-with-python2 python-fonttools))
@@ -6395,13 +6282,13 @@ implementations of ASN.1-based codecs and protocols.")
(define-public python-ipaddress
(package
(name "python-ipaddress")
- (version "1.0.19")
+ (version "1.0.22")
(source (origin
(method url-fetch)
(uri (pypi-uri "ipaddress" version))
(sha256
(base32
- "10agaa1cys1bk1ycpl2w8lky9vjx8h1xh1z29mg0niqx0638c390"))))
+ "0b570bm6xqpjwqis15pvdy6lyvvzfndjvkynilcddjj5x98wfimi"))))
(build-system python-build-system)
(home-page "https://github.com/phihag/ipaddress")
(synopsis "IP address manipulation library")
@@ -6447,14 +6334,14 @@ versions of Python.")
(define-public python-idna
(package
(name "python-idna")
- (version "2.6")
+ (version "2.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "idna" version))
(sha256
(base32
- "13qaab6d0s15gknz8v3zbcfmbj6v86hn9pjxgkdf62ch13imssic"))))
+ "05jam7d31767dr12x0rbvvs8lxnpb1mhdb2zdlfxgh83z6k3hjk8"))))
(build-system python-build-system)
(home-page "https://github.com/kjd/idna")
(synopsis "Internationalized domain names in applications")
@@ -7761,15 +7648,17 @@ library as well as on the command line.")
(define-public python-pluggy
(package
(name "python-pluggy")
- (version "0.6.0")
+ (version "0.7.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pluggy" version))
(sha256
(base32
- "1zqckndfn85l1cd8pndw212zg1bq9fkg1nnj32kp2mppppsyg2kz"))))
+ "1qbn70mksmr03hac6jgp6fiqc4l7859z8dchx2x950vhlij87swm"))))
(build-system python-build-system)
+ (native-inputs
+ `(("python-setuptools-scm" ,python-setuptools-scm)))
(synopsis "Plugin and hook calling mechanism for Python")
(description "Pluggy is an extraction of the plugin manager as used by
Pytest but stripped of Pytest specific details.")
@@ -8477,6 +8366,15 @@ ambiguities (forward vs. backward slashes, etc.).
@end enumerate")
(license license:expat)))
+(define-public python2-pathlib2-bootstrap
+ (hidden-package
+ (package
+ (inherit python2-pathlib2)
+ (name "python2-pathlib2-bootstrap")
+ (propagated-inputs
+ `(("python2-scandir" ,python2-scandir)
+ ("python2-six" ,python2-six-bootstrap))))))
+
(define-public python-jellyfish
(package
(name "python-jellyfish")
@@ -8958,13 +8856,13 @@ multiple processes (imagine multiprocessing, billiard, futures, celery etc).
(define-public python-greenlet
(package
(name "python-greenlet")
- (version "0.4.11")
+ (version "0.4.14")
(source (origin
(method url-fetch)
(uri (pypi-uri "greenlet" version))
(sha256
(base32
- "1xhik26j4f3kc4qw9xmj0c567rb5h1zryb4ijwqnqwwjvfhbv59h"))))
+ "1bsij3bwdhz2chq4ar2v6jqbh69yc7k9ymh41jd8vrdd2n52dk7i"))))
(build-system python-build-system)
(home-page "https://greenlet.readthedocs.io/")
(synopsis "Lightweight in-process concurrent programming")
@@ -10432,21 +10330,17 @@ useful as a validator for JSON data.")
(define-public python-imagesize
(package
(name "python-imagesize")
- (version "0.7.1")
+ (version "1.0.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "imagesize" version))
(sha256
(base32
- "0qk07k0z4241lkzzjji7z4da04pcvg7bfc4xz1934zlqhwmwdcha"))))
+ "05b3p62r7rbcvvbk5vknr3bhcq9b2airysn6ric534mng136wcjv"))))
(build-system python-build-system)
- (arguments
- '(;; Test files are not distributed on PyPi:
- ;; https://github.com/shibukawa/imagesize_py/issues/7
- #:tests? #f))
(home-page "https://github.com/shibukawa/imagesize_py")
- (synopsis "Gets image size of files in variaous formats in Python")
+ (synopsis "Gets image size of files in various formats in Python")
(description
"This package allows determination of image size from
PNG, JPEG, JPEG2000 and GIF files in pure Python.")
@@ -10882,6 +10776,32 @@ projects.")
(define-public python2-incremental
(package-with-python2 python-incremental))
+(define-public python-invoke
+ (package
+ (name "python-invoke")
+ (home-page "http://www.pyinvoke.org/")
+ (version "1.1.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "invoke" version))
+ (sha256
+ (base32
+ "0aiy1xvk1f91246zxd1zqrm679vdvd10h843a2na41cqr3cflpi6"))))
+ (build-system python-build-system)
+ (arguments
+ ;; XXX: Requires many dependencies that are not yet in Guix.
+ `(#:tests? #f))
+ (synopsis "Pythonic task execution")
+ (description
+ "Invoke is a Python task execution tool and library, drawing inspiration
+from various sources to arrive at a powerful and clean feature set. It is
+evolved from the Fabric project, but focuses on local and abstract concerns
+instead of servers and network commands.")
+ (license license:bsd-3)))
+
+(define-public python2-invoke
+ (package-with-python2 python-invoke))
+
(define-public python-automat
(package
(name "python-automat")
@@ -11498,13 +11418,13 @@ It supports both normal and Unicode strings.")
(define-public python-scandir
(package
(name "python-scandir")
- (version "1.7")
+ (version "1.9.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "scandir" version))
(sha256
- (base32 "0gbnhjzg42rj87ljv9kb648rfxph69ly3c8r9841dxy4d7l5pmdj"))))
+ (base32 "0r3hvf1a9jm1rkqgx40gxkmccknkaiqjavs8lccgq9s8khh5x5s4"))))
(build-system python-build-system)
(arguments
`(#:phases (modify-phases %standard-phases
@@ -11624,15 +11544,19 @@ several utilities, as well as an API for building localization tools.")
(define-public python-packaging
(package
(name "python-packaging")
- (version "16.8")
+ (version "17.1")
(source
(origin
(method url-fetch)
(uri (pypi-uri "packaging" version))
(sha256
(base32
- "17k1xbjshackwvbsnxqixbph8rbqhz4bf4g3al5xyzhavxgq6l2x"))))
+ "0nrpayk8kij1zm9sjnk38ldz3a6705ggvw8ljylqbrb4vmqbf6gh"))))
(build-system python-build-system)
+ (arguments
+ `(#:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda _ (invoke "py.test" "-vv"))))))
(native-inputs
`(("python-pretend" ,python-pretend)
("python-pytest" ,python-pytest)))
@@ -13414,14 +13338,14 @@ file system events on Linux.")
(define-public python-more-itertools
(package
(name "python-more-itertools")
- (version "4.1.0")
+ (version "4.3.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "more-itertools" version))
(sha256
(base32
- "0i3ch700g5fyjp692gprlnzbysl8w0sa2vijbp3s40drvk67xkn9"))))
+ "17h3na0rdh8xq30w4b9pizgkdxmm51896bxw600x84jflg9vaxn4"))))
(build-system python-build-system)
(propagated-inputs
`(("python-six" ,python-six-bootstrap)))
diff --git a/gnu/packages/readline.scm b/gnu/packages/readline.scm
index 4695e9fc71..59fa8af8af 100644
--- a/gnu/packages/readline.scm
+++ b/gnu/packages/readline.scm
@@ -48,7 +48,9 @@
(patch-series
(1 "0xm3sxvwmss7ddyfb11n6pgcqd1aglnpy15g143vzcf75snb7hcs")
(2 "0n1dxmqsbjgrfxb1hgk5c6lsraw4ncbnzxlsx7m35nym6lncjiw7")
- (3 "1027kmymniizcy0zbdlrczxfx3clxcdln5yq05q9yzlc6y9slhwy")))
+ (3 "1027kmymniizcy0zbdlrczxfx3clxcdln5yq05q9yzlc6y9slhwy")
+ (4 "0r3bbaf12iz8m02z6p3fzww2m365fhn71xmzab2p62gj54s6h9gr")
+ (5 "0lxpa4f72y2nsgj6fgrhjk2nmmxvccys6aciwfxwchb5f21rq5fa")))
(define-public readline
(package
diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm
index a58ebff481..66cacff12f 100644
--- a/gnu/packages/ssh.scm
+++ b/gnu/packages/ssh.scm
@@ -117,23 +117,10 @@ remote applications.")
(propagated-inputs `(("libgcrypt" ,libgcrypt)
("zlib" ,zlib)))
(arguments `(#:configure-flags `("--with-libgcrypt")
- #:phases
- ;; FIXME: In the next core-updates cycle, replace the entire
- ;; following ,(...) form with its first 'modify-phases'
- ;; subform. The change made here is only strictly needed on
- ;; MIPS, but should work on any system. For now, we apply it
- ;; only to MIPS to avoid forcing thousands of rebuilds on
- ;; other systems.
- ,(if (string-prefix? "mips" (or (%current-target-system)
- (%current-system)))
- '(modify-phases %standard-phases
- (replace 'bootstrap
- (lambda _
- (invoke "autoreconf" "-v"))))
- '(modify-phases %standard-phases
- (add-before 'configure 'autoreconf
- (lambda _
- (invoke "autoreconf" "-v")))))))
+ #:phases (modify-phases %standard-phases
+ (replace 'bootstrap
+ (lambda _
+ (invoke "autoreconf" "-v"))))))
(native-inputs `(("autoconf" ,autoconf)
("automake" ,automake)))
(synopsis "Client-side C library implementing the SSH2 protocol")
diff --git a/gnu/packages/tcl.scm b/gnu/packages/tcl.scm
index f7d3e0ec7d..b8c85eb844 100644
--- a/gnu/packages/tcl.scm
+++ b/gnu/packages/tcl.scm
@@ -2,7 +2,7 @@
;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014, 2015, 2018 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
-;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
;;; Copyright © 2017 Kei Kebreau <kkebreau@posteo.net>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -25,6 +25,7 @@
(define-module (gnu packages tcl)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix utils)
#:use-module (guix build-system gnu)
#:use-module (guix build-system perl)
#:use-module (gnu packages)
@@ -145,13 +146,22 @@ X11 GUIs.")
(patches (search-patches "tk-find-library.patch"))))
(build-system gnu-build-system)
(arguments
- '(#:phases (modify-phases %standard-phases
+ `(#:phases (modify-phases %standard-phases
(add-before
'configure 'pre-configure
(lambda _
(chdir "unix")
#t))
(add-after
+ 'install 'create-wish-symlink
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (symlink (string-append out "/bin/wish"
+ ,(version-major+minor
+ (package-version tk)))
+ (string-append out "/bin/wish")))
+ #t))
+ (add-after
'install 'add-fontconfig-flag
(lambda* (#:key inputs outputs #:allow-other-keys)
;; Add the missing -L flag for Fontconfig in 'tk.pc' and
@@ -179,7 +189,7 @@ X11 GUIs.")
(propagated-inputs `(("libx11" ,libx11)
("libxext" ,libxext)))
- (home-page "http://www.tcl.tk/")
+ (home-page "https://www.tcl.tk/")
(synopsis "Graphical user interface toolkit for Tcl")
(description
"Tk is a graphical toolkit for building graphical user
diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm
index 6ab999b2d5..ed85950bb6 100644
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@ -6,7 +6,7 @@
;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il>
;;; Copyright © 2016 Federico Beffa <beffa@fbengineering.ch>
;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be>
-;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -76,42 +76,41 @@
(define texlive-extra-src
(origin
(method url-fetch)
- (uri "ftp://tug.org/historic/systems/texlive/2017/texlive-20170524-extra.tar.xz")
+ (uri "ftp://tug.org/historic/systems/texlive/2018/texlive-20180414-extra.tar.xz")
(sha256 (base32
- "0zvd2zskk78ig114mfj24g15qys41hzqv59fmqpirdbgq9c9gr5g"))))
+ "0a83kymxc8zmlxjb0y1gf6mx7qnf0hxffwkivwh5yh138y2rfhsv"))))
(define texlive-texmf-src
(origin
(method url-fetch)
- (uri "ftp://tug.org/historic/systems/texlive/2017/texlive-20170524-texmf.tar.xz")
+ (uri "ftp://tug.org/historic/systems/texlive/2018/texlive-20180414-texmf.tar.xz")
(sha256 (base32
- "1v69y3kgkbk24f7s4dfkknwd317mqmck5jgpyb35wqgqfy5p0qrz"))))
+ "1b8zigzg8raxkhhzphcmynf84rbdbj2ym2qkz24v8n0qx82zmqms"))))
(define-public texlive-bin
(package
(name "texlive-bin")
- (version "20170524")
+ (version "20180414")
(source
(origin
- (method url-fetch)
- (uri (string-append "ftp://tug.org/historic/systems/texlive/2017/"
+ (method url-fetch)
+ (uri (string-append "ftp://tug.org/historic/systems/texlive/2018/"
"texlive-" version "-source.tar.xz"))
+ (sha256
+ (base32
+ "0khyi6h015r2zfqgg0a44a2j7vmr1cy42knw7jbss237yvakc07y"))
(patches
(list
- ;; This is required for compatibility with Poppler >= 0.58.
- ;; See <http://tutex.tug.org/pipermail/tex-k/2017-September/002809.html>
- ;; and <https://bugs.archlinux.org/task/55720> for some discussion.
+ ;; This is required for compatibility with Poppler 0.64.0 and to fix a
+ ;; segmentation fault in dvipdfm-x from XeTeX.
(origin
(method url-fetch)
- (uri (string-append "https://git.archlinux.org/svntogit/packages.git/plain"
- "/trunk/texlive-poppler-0.59.patch?h=packages/texlive-bin"
- "&id=ba2de374e2b21ecc4b85cc9777f2f15c4d356c61"))
+ (uri (string-append "http://www.linuxfromscratch.org/patches/blfs/"
+ "svn/texlive-" version "-source-upstream_fixes-1.patch"))
(file-name "texlive-poppler-compat.patch")
(sha256
(base32
- "1c4ikq4kxw48bi3i33bzpabrjvbk01fwjr2lz20gkc9kv8l0bg3n")))))
- (sha256 (base32
- "1amjrxyasplv4alfwcxwnw4nrx7dz2ydmddkq16k6hg90i9njq81"))))
+ "0f8vhyj167y4xj0jx47vkybrcacfpxw0wdn1b777yq3xmhlahhlg")))))))
(build-system gnu-build-system)
(inputs
`(("texlive-extra-src" ,texlive-extra-src)
@@ -175,47 +174,54 @@
(not (or (string-prefix? "aarch64" s)
(string-prefix? "mips64" s))))
#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'configure-ghostscript-executable
- ;; ps2eps.pl uses the "gswin32c" ghostscript executable on Windows,
- ;; and the "gs" ghostscript executable on Unix. It detects Unix by
- ;; checking for the existence of the /usr/bin directory. Since
- ;; GuixSD does not have /usr/bin, it is also detected as Windows.
- (lambda* (#:key inputs #:allow-other-keys)
- (substitute* "utils/ps2eps/ps2eps-src/bin/ps2eps.pl"
- (("gswin32c") "gs"))
- (substitute* "texk/texlive/linked_scripts/epstopdf/epstopdf.pl"
- (("\"gs\"")
- (string-append "\"" (assoc-ref inputs "ghostscript") "/bin/gs\"")))
- #t))
- (add-after 'install 'postint
- (lambda* (#:key inputs outputs #:allow-other-keys #:rest args)
- (let* ((out (assoc-ref outputs "out"))
- (share (string-append out "/share"))
- (texlive-extra (assoc-ref inputs "texlive-extra-src"))
- (unpack (assoc-ref %standard-phases 'unpack))
- (patch-source-shebangs
- (assoc-ref %standard-phases 'patch-source-shebangs)))
- ;; Create symbolic links for the latex variants and their
- ;; man pages.
- (with-directory-excursion (string-append out "/bin/")
- (for-each symlink
- '("pdftex" "pdftex" "xetex" "luatex")
- '("latex" "pdflatex" "xelatex" "lualatex")))
- (with-directory-excursion (string-append share "/man/man1/")
- (symlink "luatex.1" "lualatex.1"))
- ;; Unpack texlive-extra and install tlpkg.
- (mkdir "texlive-extra")
- (with-directory-excursion "texlive-extra"
- (apply unpack (list #:source texlive-extra))
- (apply patch-source-shebangs (list #:source texlive-extra))
- (invoke "mv" "tlpkg" share))
- ;; texlua shebangs are not patched by the patch-source-shebangs
- ;; phase because the texlua executable does not exist at that
- ;; time.
- (setenv "PATH" (string-append (getenv "PATH") ":" out "/bin"))
- (with-directory-excursion out
- (patch-source-shebangs))))))))
+ (modify-phases %standard-phases
+ (add-after 'unpack 'configure-ghostscript-executable
+ ;; ps2eps.pl uses the "gswin32c" ghostscript executable on Windows,
+ ;; and the "gs" ghostscript executable on Unix. It detects Unix by
+ ;; checking for the existence of the /usr/bin directory. Since
+ ;; GuixSD does not have /usr/bin, it is also detected as Windows.
+ (lambda* (#:key inputs #:allow-other-keys)
+ (substitute* "utils/ps2eps/ps2eps-src/bin/ps2eps.pl"
+ (("gswin32c") "gs"))
+ (substitute* "texk/texlive/linked_scripts/epstopdf/epstopdf.pl"
+ (("\"gs\"")
+ (string-append "\"" (assoc-ref inputs "ghostscript") "/bin/gs\"")))
+ #t))
+ (add-after 'unpack 'use-code-for-new-poppler
+ (lambda _
+ (copy-file "texk/web2c/pdftexdir/pdftoepdf-newpoppler.cc"
+ "texk/web2c/pdftexdir/pdftoepdf.cc")
+ (copy-file "texk/web2c/pdftexdir/pdftosrc-newpoppler.cc"
+ "texk/web2c/pdftexdir/pdftosrc.cc")
+ #t))
+ (add-after 'install 'postint
+ (lambda* (#:key inputs outputs #:allow-other-keys #:rest args)
+ (let* ((out (assoc-ref outputs "out"))
+ (share (string-append out "/share"))
+ (texlive-extra (assoc-ref inputs "texlive-extra-src"))
+ (unpack (assoc-ref %standard-phases 'unpack))
+ (patch-source-shebangs
+ (assoc-ref %standard-phases 'patch-source-shebangs)))
+ ;; Create symbolic links for the latex variants and their
+ ;; man pages.
+ (with-directory-excursion (string-append out "/bin/")
+ (for-each symlink
+ '("pdftex" "pdftex" "xetex" "luatex")
+ '("latex" "pdflatex" "xelatex" "lualatex")))
+ (with-directory-excursion (string-append share "/man/man1/")
+ (symlink "luatex.1" "lualatex.1"))
+ ;; Unpack texlive-extra and install tlpkg.
+ (mkdir "texlive-extra")
+ (with-directory-excursion "texlive-extra"
+ (apply unpack (list #:source texlive-extra))
+ (apply patch-source-shebangs (list #:source texlive-extra))
+ (invoke "mv" "tlpkg" share))
+ ;; texlua shebangs are not patched by the patch-source-shebangs
+ ;; phase because the texlua executable does not exist at that
+ ;; time.
+ (setenv "PATH" (string-append (getenv "PATH") ":" out "/bin"))
+ (with-directory-excursion out
+ (patch-source-shebangs))))))))
(synopsis "TeX Live, a package of the TeX typesetting system")
(description
"TeX Live provides a comprehensive TeX document production system.
@@ -3957,7 +3963,7 @@ directly generate PDF documents instead of DVI.")
(define texlive-texmf
(package
(name "texlive-texmf")
- (version "2017")
+ (version "20180414")
(source texlive-texmf-src)
(build-system gnu-build-system)
(inputs
@@ -4029,7 +4035,7 @@ This package contains the complete tree of texmf-dist data.")
(define-public texlive
(package
(name "texlive")
- (version "2017")
+ (version "20180414")
(source #f)
(build-system trivial-build-system)
(inputs `(("bash" ,bash) ; for wrap-program
diff --git a/gnu/packages/texinfo.scm b/gnu/packages/texinfo.scm
index 109a24bf62..5fe7f1ec9c 100644
--- a/gnu/packages/texinfo.scm
+++ b/gnu/packages/texinfo.scm
@@ -37,6 +37,7 @@
(method url-fetch)
(uri (string-append "mirror://gnu/texinfo/texinfo-"
version ".tar.xz"))
+ (patches (search-patches "texinfo-perl-compat.patch"))
(sha256
(base32
"0qjzvbvnv9003xdrcpi3jp7y68j4hq2ciw9frh2hghh698zlnxvp"))))
diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm
index fc831ab6cc..13eded4179 100644
--- a/gnu/packages/time.scm
+++ b/gnu/packages/time.scm
@@ -88,17 +88,15 @@ to a file.")
(define-public python-pytz
(package
(name "python-pytz")
- (version "2017.3")
+ (version "2018.5")
(source
(origin
(method url-fetch)
- (uri (pypi-uri "pytz" version ".zip"))
+ (uri (pypi-uri "pytz" version ".tar.gz"))
(sha256
(base32
- "1dw5l527vcafvdqq4wadwl7ikhb2sssz0v0cssibh8890kyczr7s"))))
+ "0xzj5gkpdn2da8m6j47chlp6zrzcypv9m0fjv4236q3jw4fyzfgz"))))
(build-system python-build-system)
- (native-inputs
- `(("unzip" ,unzip)))
(home-page "http://pythonhosted.org/pytz")
(synopsis "Python timezone library")
(description "This library brings the Olson tz database into Python. It
diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index 28d2ea5fd5..02c12c9446 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -80,6 +80,8 @@
(base32
"1jlc1iahj8k3haz28j55nzg7sgni5h41vqy461i1bpbx6668wlky"))))
(build-system gnu-build-system)
+ (arguments
+ `(#:configure-flags '("--disable-static")))
(native-inputs `(("perl" ,perl)))
(home-page "https://www.gnu.org/software/libtasn1/")
(synopsis "ASN.1 library")
@@ -260,7 +262,6 @@ required structures.")
(define-public openssl
(package
(name "openssl")
- (replacement openssl/fixed)
(version "1.0.2o")
(source (origin
(method url-fetch)
@@ -275,6 +276,8 @@ required structures.")
(base32
"0kcy13l701054nhpbd901mz32v1kn4g311z0nifd83xs2jbmqgzc"))
(patches (search-patches "openssl-runpath.patch"
+ "openssl-1.0.2-CVE-2018-0495.patch"
+ "openssl-1.0.2-CVE-2018-0732.patch"
"openssl-c-rehash-in.patch"))))
(build-system gnu-build-system)
(outputs '("out"
@@ -397,15 +400,6 @@ required structures.")
(license license:openssl)
(home-page "https://www.openssl.org/")))
-(define openssl/fixed
- (package
- (inherit openssl)
- (source (origin
- (inherit (package-source openssl))
- (patches (append (origin-patches (package-source openssl))
- (search-patches "openssl-1.0.2-CVE-2018-0495.patch"
- "openssl-1.0.2-CVE-2018-0732.patch")))))))
-
(define-public openssl-next
(package
(inherit openssl)
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index aea75654be..f3412c275e 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -508,7 +508,7 @@ libraries for working with JNLP applets.")
(define-public jansson
(package
(name "jansson")
- (version "2.10")
+ (version "2.11")
(source (origin
(method url-fetch)
(uri
@@ -516,7 +516,7 @@ libraries for working with JNLP applets.")
version ".tar.gz"))
(sha256
(base32
- "0iv4rxsnamqm3ldpg7dyhjq0x9cp023nc7ac820jdd3pwb8ml8bq"))))
+ "1x5jllzzqamq6kahx9d9a5mrarm9m3f30vfxvcqpi6p4mcnz91bf"))))
(build-system gnu-build-system)
(home-page "http://www.digip.org/jansson/")
(synopsis "JSON C library")
@@ -6626,7 +6626,7 @@ derivation by David Revoy from the original MonsterID by Andreas Gohr.")
(define-public nghttp2
(package
(name "nghttp2")
- (version "1.31.1")
+ (version "1.32.0")
(source
(origin
(method url-fetch)
@@ -6635,7 +6635,7 @@ derivation by David Revoy from the original MonsterID by Andreas Gohr.")
name "-" version ".tar.xz"))
(sha256
(base32
- "00z1687m4wi2gbgkijbv099l9hs1sjlyzbhh8jhn0xssx4xcifb5"))))
+ "0zbgp8f80h2zlfn8cd2ldrmgl81jzcdh1141n71aqmfckzaqj2kh"))))
(build-system gnu-build-system)
(outputs (list "out"
"lib")) ; only libnghttp2
diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index 9c8e3cef08..0cecb5bf7c 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -64,14 +64,14 @@
(define-public expat
(package
(name "expat")
- (version "2.2.5")
+ (version "2.2.6")
(source (origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/expat/expat/"
version "/expat-" version ".tar.bz2"))
(sha256
(base32
- "1xpd78sp7m34jqrw5x13bz7kgz0n6aj15wn4zj4gfx3ypbpk5p6r"))))
+ "1wl1x93b5w457ddsdgj0lh7yjq4q6l7wfbgwhagkc8fm2qkkrd0p"))))
(build-system gnu-build-system)
(home-page "https://libexpat.github.io/")
(synopsis "Stream-oriented XML parser library written in C")
@@ -129,8 +129,23 @@ hierarchical form with variable field lengths.")
(base32
"0ci7is75bwqqw2p32vxvrk6ds51ik7qgx73m920rakv5jlayax0b"))))
(build-system gnu-build-system)
+ (outputs '("out" "static"))
+ (arguments
+ `(#:phases (modify-phases %standard-phases
+ (add-after 'install 'move-static-libs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((src (string-append (assoc-ref outputs "out") "/lib"))
+ (dst (string-append (assoc-ref outputs "static")
+ "/lib")))
+ (mkdir-p dst)
+ (for-each (lambda (ar)
+ (rename-file ar (string-append dst "/"
+ (basename ar))))
+ (find-files src "\\.a$"))
+ #t))))))
(home-page "http://www.xmlsoft.org/")
(synopsis "C parser for XML")
+ (inputs `(("xz" ,xz)))
(propagated-inputs `(("zlib" ,zlib))) ; libxml2.la says '-lz'.
(native-inputs `(("perl" ,perl)))
;; $XML_CATALOG_FILES lists 'catalog.xml' files found in under the 'xml'
@@ -151,6 +166,7 @@ project (but it is usable outside of the Gnome platform).")
(package/inherit libxml2
(name "python-libxml2")
(build-system python-build-system)
+ (outputs '("out"))
(arguments
`(;; XXX: Tests are specified in 'Makefile.am', but not in 'setup.py'.
#:tests? #f