diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/maths.scm | 23 | ||||
| -rw-r--r-- | gnu/packages/patches/mumps-shared-libseq.patch | 42 | ||||
| -rw-r--r-- | gnu/packages/patches/mumps-shared-mumps.patch | 63 | ||||
| -rw-r--r-- | gnu/packages/patches/mumps-shared-pord.patch | 77 |
4 files changed, 197 insertions, 8 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index ee633e32f8..06b34e2b89 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2180,7 +2180,10 @@ bindings to almost all functions of SLEPc.") (sha256 (base32 "0jklh54x4y3ik1zkw6db7766kakjm5910diyaghfxxf8vwsgr26r")) - (patches (search-patches "mumps-build-parallelism.patch")))) + (patches (search-patches "mumps-build-parallelism.patch" + "mumps-shared-libseq.patch" + "mumps-shared-mumps.patch" + "mumps-shared-pord.patch")))) (build-system gnu-build-system) (inputs `(("fortran" ,gfortran) @@ -2210,15 +2213,17 @@ CC = gcc FC = gfortran FL = gfortran INCSEQ = -I$(topdir)/libseq -LIBSEQ = -L$(topdir)/libseq -lmpiseq +LIBSEQ = $(topdir)/libseq/libmpiseq.a LIBSEQNEEDED = libseqneeded~; CC = mpicc FC = mpifort FL = mpifort~] AR = ar vr # rules require trailing space, ugh... RANLIB = ranlib -LIBBLAS = -L~a -lopenblas~@[ -SCALAP = -L~a -lscalapack~] +BLASDIR = ~a +LIBBLAS = -Wl,-rpath=$(BLASDIR) -Wl,-rpath='$$ORIGIN' -L$(BLASDIR) -lopenblas~@[ +SCALAPDIR = ~a +SCALAP = -Wl,-rpath=$(SCALAPDIR) -Wl,-rpath='$$ORIGIN' -L$(SCALAPDIR) -lscalapack~] LIBOTHERS = -pthread CDEFS = -DAdd_ PIC = -fPIC @@ -2229,18 +2234,18 @@ INCS = $(INCSEQ) LIBS = $(SCALAP) $(LIBSEQ) LPORDDIR = $(topdir)/PORD/lib IPORD = -I$(topdir)/PORD/include -LPORD = -L$(LPORDDIR) -lpord +LPORD = $(LPORDDIR)/libpord.a ORDERINGSF = -Dpord~@[ METISDIR = ~a IMETIS = -I$(METISDIR)/include -LMETIS = -L$(METISDIR)/lib -lmetis +LMETIS = -Wl,-rpath $(METISDIR)/lib -L$(METISDIR)/lib -lmetis ORDERINGSF += -Dmetis~]~@[~:{ SCOTCHDIR = ~a ISCOTCH = -I$(SCOTCHDIR)/include -LSCOTCH = -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr +LSCOTCH = -Wl,-rpath $(SCOTCHDIR)/lib -L$(SCOTCHDIR)/lib ~a-lesmumps -lscotch -lscotcherr ORDERINGSF += ~a~}~] ORDERINGSC = $(ORDERINGSF) -LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH) +LORDERINGS = $(LPORD) $(LMETIS) $(LSCOTCH) $(LIBSEQ) IORDERINGSF = $(ISCOTCH) IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)" (assoc-ref inputs "mpi") @@ -2294,6 +2299,8 @@ IORDERINGSC = $(IPORD) $(IMETIS) $(ISCOTCH)" (copy-recursively "include" (string-append out "/include")) (when (file-exists? "libseq/libmpiseq.a") (install-file "libseq/libmpiseq.a" libdir)) + (when (file-exists? "libseq/libmpiseq.so") + (install-file "libseq/libmpiseq.so" libdir)) #t)))))) (home-page "http://mumps.enseeiht.fr") (synopsis "Multifrontal sparse direct solver") diff --git a/gnu/packages/patches/mumps-shared-libseq.patch b/gnu/packages/patches/mumps-shared-libseq.patch new file mode 100644 index 0000000000..feafcf123b --- /dev/null +++ b/gnu/packages/patches/mumps-shared-libseq.patch @@ -0,0 +1,42 @@ +Create a shared version of the sequential library, MUST BE LAST IN SERIES + +Index: mumps/libseq/Makefile +=================================================================== +--- mumps.orig/libseq/Makefile ++++ mumps/libseq/Makefile +@@ -8,15 +8,17 @@ all: libmpiseq + + include ../Makefile.inc + +-libmpiseq: libmpiseq$(PLAT)$(LIBEXT) ++libmpiseq: libmpiseq$(PLAT).a libmpiseq$(PLAT).so + +-libmpiseq$(PLAT)$(LIBEXT): mpi.o mpic.o elapse.o +- $(AR)$@ mpi.o mpic.o elapse.o ++libmpiseq$(PLAT).a: mpi.o mpic.o elapse.o ++ $(AR) $@ mpi.o mpic.o elapse.o + $(RANLIB) $@ ++libmpiseq$(PLAT).so: mpi.o mpic.o elapse.o ++ $(FC) -shared $^ -Wl,-soname,libmpiseq$(PLAT)-5.1.2.so -o libmpiseq$(PLAT)-5.1.2.so -Wl,-z,defs + .f.o: +- $(FC) $(OPTF) -c $*.f $(OUTF)$*.o ++ $(FC) $(OPTF) -fPIC -c $*.f $(OUTF)$*.o + .c.o: +- $(CC) $(OPTC) $(CDEFS) -I. -c $*.c $(OUTC)$*.o ++ $(CC) $(OPTC) $(CDEFS) -I. -fPIC -c $*.c $(OUTC)$*.o + + clean: +- $(RM) *.o *$(LIBEXT) ++ $(RM) *.o *.a *.so +Index: mumps/Makefile +=================================================================== +--- mumps.orig/Makefile ++++ mumps/Makefile +@@ -60,6 +60,7 @@ requiredobj: Makefile.inc $(LIBSEQNEEDED + + libseqneeded: + (cd libseq; $(MAKE)) ++ cp libseq/lib* $(libdir) + + # Build the libpord.a library and copy it into $(topdir)/lib + $(libdir)/libpord$(PLAT).a: diff --git a/gnu/packages/patches/mumps-shared-mumps.patch b/gnu/packages/patches/mumps-shared-mumps.patch new file mode 100644 index 0000000000..9e2491f300 --- /dev/null +++ b/gnu/packages/patches/mumps-shared-mumps.patch @@ -0,0 +1,63 @@ +Create a shared version of the MUMPS library. + +Index: mumps/src/Makefile +=================================================================== +--- mumps.orig/src/Makefile ++++ mumps/src/Makefile +@@ -23,8 +23,10 @@ z: + + include $(topdir)/Makefile.inc + +-mumps_lib: $(libdir)/libmumps_common$(PLAT)$(LIBEXT) \ +- $(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT) ++mumps_lib: $(libdir)/libmumps_common$(PLAT).a \ ++ $(libdir)/libmumps_common$(PLAT).so \ ++ $(libdir)/lib$(ARITH)mumps$(PLAT).a \ ++ $(libdir)/lib$(ARITH)mumps$(PLAT).so + + OBJS_COMMON_MOD = \ + lr_common.o \ +@@ -167,14 +169,22 @@ OBJS_OTHER = \ + $(ARITH)tools.o\ + $(ARITH)type3_root.o + +-$(libdir)/libmumps_common$(PLAT)$(LIBEXT): $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER) +- $(AR)$@ $? ++$(libdir)/libmumps_common$(PLAT).a: $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER) ++ $(AR) $@ $? + $(RANLIB) $@ + +-$(libdir)/lib$(ARITH)mumps$(PLAT)$(LIBEXT): $(OBJS_MOD) $(OBJS_OTHER) +- $(AR)$@ $? ++$(libdir)/libmumps_common$(PLAT).so: $(OBJS_COMMON_MOD) $(OBJS_COMMON_OTHER) ++ $(FC) -shared $^ -Wl,-soname,libmumps_common$(PLAT)-5.1.2.so -L$(libdir) $(LORDERINGS) -lpthread $(MPIFLIB) $(MPICLIB) $(LEXTRAS) -o $(libdir)/libmumps_common$(PLAT)-5.1.2.so -Wl,-z,defs ++ ln -s libmumps_common$(PLAT)-5.1.2.so $@ ++ ++$(libdir)/lib$(ARITH)mumps$(PLAT).a: $(OBJS_MOD) $(OBJS_OTHER) ++ $(AR) $@ $? + $(RANLIB) $@ + ++$(libdir)/lib$(ARITH)mumps$(PLAT).so: $(OBJS_MOD) $(OBJS_OTHER) ++ $(FC) -shared $^ -Wl,-soname,lib$(ARITH)mumps$(PLAT)-5.1.2.so -L$(libdir) -lmumps_common$(PLAT) $(LORDERINGS) $(MPIFLIB) $(LEXTRAS) $(LIBBLAS) $(SCALAP) $(LAPACK) -o $(libdir)/lib$(ARITH)mumps$(PLAT)-5.1.2.so -Wl,-z,defs ++ ln -s lib$(ARITH)mumps$(PLAT)-5.1.2.so $@ ++ + # Dependencies between modules: + $(ARITH)mumps_load.o: $(ARITH)mumps_comm_buffer.o \ + $(ARITH)mumps_struc_def.o \ +@@ -290,13 +300,13 @@ $(OBJS_OTHER):$(OBJS_COMMON_MOD) $(OBJS_ + + .SUFFIXES: .c .F .o + .F.o: +- $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -c $*.F $(OUTF)$*.o ++ $(FC) $(OPTF) $(INCS) $(IORDERINGSF) $(ORDERINGSF) -I. -I../include -fPIC -c $*.F $(OUTF)$*.o + .c.o: +- $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -c $*.c $(OUTC)$*.o ++ $(CC) $(OPTC) $(INCS) -I../include $(CDEFS) $(IORDERINGSC) $(ORDERINGSC) -fPIC -c $*.c $(OUTC)$*.o + + $(ARITH)mumps_c.o: mumps_c.c + $(CC) $(OPTC) $(INCS) $(CDEFS) -DMUMPS_ARITH=MUMPS_ARITH_$(ARITH) \ +- $(IORDERINGSC) $(ORDERINGSC) -I../include -c mumps_c.c $(OUTC)$@ ++ $(IORDERINGSC) $(ORDERINGSC) -I../include -fPIC -c mumps_c.c $(OUTC)$@ + + + clean: diff --git a/gnu/packages/patches/mumps-shared-pord.patch b/gnu/packages/patches/mumps-shared-pord.patch new file mode 100644 index 0000000000..48062d4f89 --- /dev/null +++ b/gnu/packages/patches/mumps-shared-pord.patch @@ -0,0 +1,77 @@ +Create static and shared versions of the PORD library. + +Index: mumps/PORD/lib/Makefile +=================================================================== +--- mumps.orig/PORD/lib/Makefile ++++ mumps/PORD/lib/Makefile +@@ -9,7 +9,7 @@ + + INCLUDES = -I../include + +-COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS) ++COPTIONS = $(INCLUDES) $(CFLAGS) $(OPTFLAGS) -fPIC + + OBJS = graph.o gbipart.o gbisect.o ddcreate.o ddbisect.o nestdiss.o \ + multisector.o gelim.o bucket.o tree.o \ +@@ -24,12 +24,16 @@ OBJS = graph.o gbipart.o gbisect.o ddcre + .c.o: + $(CC) $(COPTIONS) -c $*.c $(OUTC)$*.o + +-libpord$(LIBEXT):$(OBJS) +- $(AR)$@ $(OBJS) ++libpord$(PLAT).a:$(OBJS) ++ $(AR) $@ $(OBJS) + $(RANLIB) $@ + ++libpord$(PLAT).so: $(OBJS) ++ $(CC) -shared $(OBJS) -Wl,-soname,libpord$(PLAT)-5.1.2.so -o libpord$(PLAT)-5.1.2.so -Wl,-z,defs ++ ln -s libpord$(PLAT)-5.1.2.so $@ ++ + clean: + rm -f *.o + + realclean: +- rm -f *.o libpord.a ++ rm -f *.o libpord*.a *.so +Index: mumps/Makefile +=================================================================== +--- mumps.orig/Makefile ++++ mumps/Makefile +@@ -54,7 +54,7 @@ dexamples: d + multi_example: s d c z + (cd examples ; $(MAKE) multi) + +-requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT)$(LIBEXT) ++requiredobj: Makefile.inc $(LIBSEQNEEDED) $(libdir)/libpord$(PLAT).a $(libdir)/libpord$(PLAT).so + + # dummy MPI library (sequential version) + +@@ -62,19 +62,25 @@ libseqneeded: + (cd libseq; $(MAKE)) + + # Build the libpord.a library and copy it into $(topdir)/lib +-$(libdir)/libpord$(PLAT)$(LIBEXT): ++$(libdir)/libpord$(PLAT).a: + if [ "$(LPORDDIR)" != "" ] ; then \ + cd $(LPORDDIR); \ + $(MAKE) CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" RANLIB="$(RANLIB)" OUTC="$(OUTC)" LIBEXT=$(LIBEXT); \ + fi; + if [ "$(LPORDDIR)" != "" ] ; then \ +- cp $(LPORDDIR)/libpord$(LIBEXT) $@; \ ++ cp $(LPORDDIR)/libpord$(PLAT).a $@; \ + fi; + ++$(libdir)/libpord$(PLAT).so: ++ if [ "$(LPORDDIR)" != "" ] ; then \ ++ cd $(LPORDDIR); make CC="$(CC)" CFLAGS="$(OPTC)" AR="$(AR)" ARFUNCT= RANLIB="$(RANLIB)" libpord$(PLAT).so; fi; ++ if [ "$(LPORDDIR)" != "" ] ; then \ ++ cp -a $(LPORDDIR)/libpord*.so lib/; fi; ++ + clean: + (cd src; $(MAKE) clean) + (cd examples; $(MAKE) clean) +- (cd $(libdir); $(RM) *$(PLAT)$(LIBEXT)) ++ (cd $(libdir); $(RM) *$(PLAT).a *$(PLAT).so) + (cd libseq; $(MAKE) clean) + if [ "$(LPORDDIR)" != "" ] ; then \ + cd $(LPORDDIR); $(MAKE) realclean; \ |