diff options
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 28 | ||||
| -rw-r--r-- | gnu/packages/emacs-xyz.scm | 8 |
2 files changed, 32 insertions, 4 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index e4b01170e3..ab34958cf7 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1166,6 +1166,34 @@ biscuiteer.") chromstaR package.") (license license:gpl3))) +(define-public r-chromvarmotifs + (let ((commit "38bed559c1f4770b6c91c80bf3f8ea965da26076") + (revision "1")) + (package + (name "r-chromvarmotifs") + (version (git-version "0.2.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/GreenleafLab/chromVARmotifs") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0i9v1m1hrg1lkd2pnkj5nnrpks6vhhhpbdhsfl2lmjak4npxxr5q")))) + (properties `((upstream-name . "chromVARmotifs"))) + (build-system r-build-system) + (propagated-inputs + `(("r-tfbstools" ,r-tfbstools))) + (home-page "https://github.com/GreenleafLab/chromVARmotifs") + (synopsis "Stores motif collections for use with motifmatchr or chromVAR") + (description + "This package stores motif collections as lists of @dfn{position +frequency matrix} (PWMatrixList) objects provided by the @code{TFBSTools} +package for use in R with packages like @code{motifmatchr} or +@code{chromVAR}.") + (license license:expat)))) + (define-public r-copyhelper (package (name "r-copyhelper") diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 0ba7fb8077..6c00de8ce5 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -282,7 +282,7 @@ e.g. emacs-geiser-guile for Guile.") (define-public emacs-geiser-guile (package (name "emacs-geiser-guile") - (version "0.18") + (version "0.19") (source (origin (method git-fetch) @@ -291,7 +291,7 @@ e.g. emacs-geiser-guile for Guile.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0gndf0w8dbv54bzc04svp2ck8wypa7i3b8kpixf6rkg91l79xpci")))) + (base32 "1r21d61b2l65gr90s2h83xfnjgzc4n9ris4g5n3ifvdi3pyga6k9")))) (build-system emacs-build-system) (arguments '(#:include (cons "^src/" %default-include) @@ -8119,7 +8119,7 @@ single theme but a set of guidelines with numerous implementations.") (define-public emacs-solaire-mode (package (name "emacs-solaire-mode") - (version "2.0.3") + (version "2.0.4") (source (origin (method git-fetch) @@ -8128,7 +8128,7 @@ single theme but a set of guidelines with numerous implementations.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0wq5ckwx3wv4c4l8f9hz3ak6v5wy4lg5yh8xlsgn1h1x6yf8afpp")))) + (base32 "1lkm09wznal0grpz61ikc77mjrri1x1bi79qwyf1cah9s0wv3isq")))) (build-system emacs-build-system) (home-page "https://github.com/hlissner/emacs-solaire-mode") (synopsis "Change background of file-visiting buffers in Emacs") |